Sökresultat - Gurevich, Alexey

NPS: scoring and evaluating the statistical significance of peptidic natural product–spectrum matches av Tagirdzhanov, Azat M, Shlemov, Alexander, Gurevich, Alexey

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QUAST: quality assessment tool for genome assemblies av Gurevich, Alexey, Saveliev, Vladislav, Vyahhi, Nikolay, Tesler, Glenn

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Versatile genome assembly evaluation with QUAST-LG av Mikheenko, Alla, Prjibelski, Andrey, Saveliev, Vladislav, Antipov, Dmitry, Gurevich, Alexey

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Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra av Gurevich, Alexey, Mikheenko, Alla, Shlemov, Alexander, Korobeynikov, Anton, Mohimani, Hosein, Pevzner, Pavel A.

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TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats av Mikheenko, Alla, Bzikadze, Andrey V, Gurevich, Alexey, Miga, Karen H, Pevzner, Pavel A

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MolDiscovery: learning mass spectrometry fragmentation of small molecules av Cao, Liu, Guler, Mustafa, Tagirdzhanov, Azat, Lee, Yi-Yuan, Gurevich, Alexey, Mohimani, Hosein

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Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules av Edlund, Anna, Garg, Neha, Mohimani, Hosein, Gurevich, Alexey, He, Xuesong, Shi, Wenyuan, Dorrestein, Pieter C., McLean, Jeffrey S.

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Dereplication of peptidic natural products through database search of mass spectra av Mohimani, Hosein, Gurevich, Alexey, Mikheenko, Alla, Garg, Neha, Nothias, Louis-Felix, Ninomiya, Akihiro, Takada, Kentaro, Dorrestein, Pieter C., Pevzner, Pavel A.

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Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides av Kunyavskaya, Olga, Tagirdzhanov, Azat M., Caraballo-Rodríguez, Andrés Mauricio, Nothias, Louis-Félix, Dorrestein, Pieter C., Korobeynikov, Anton, Mohimani, Hosein, Gurevich, Alexey

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ExSPAnder: a universal repeat resolver for DNA fragment assembly av Prjibelski, Andrey D., Vasilinetc, Irina, Bankevich, Anton, Gurevich, Alexey, Krivosheeva, Tatiana, Nurk, Sergey, Pham, Son, Korobeynikov, Anton, Lapidus, Alla, Pevzner, Pavel A.

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Dereplication of microbial metabolites through database search of mass spectra av Mohimani, Hosein, Gurevich, Alexey, Shlemov, Alexander, Mikheenko, Alla, Korobeynikov, Anton, Cao, Liu, Shcherbin, Egor, Nothias, Louis-Felix, Dorrestein, Pieter C., Pevzner, Pavel A.

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Transarterial Embolization Modulates the Immune Response within Target and Nontarget Hepatocellular Carcinomas in a Rat Model av Tischfield, David J., Gurevich, Alexey, Johnson, Omar, Gatmaytan, Isabela, Nadolski, Gregory J., Soulen, Michael C., Kaplan, David E., Furth, Emma, Hunt, Stephen J., Gade, Terence P. F.

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Assembly of Slx4 signaling complexes behind DNA replication forks av Balint, Attila, Kim, TaeHyung, Gallo, David, Cussiol, Jose Renato, Bastos de Oliveira, Francisco M, Yimit, Askar, Ou, Jiongwen, Nakato, Ryuichiro, Gurevich, Alexey, Shirahige, Katsuhiko, Smolka, Marcus B, Zhang, Zhaolei, Brown, Grant W

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Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery av Behsaz, Bahar, Bode, Edna, Gurevich, Alexey, Shi, Yan-Ni, Grundmann, Florian, Acharya, Deepa, Caraballo-Rodríguez, Andrés Mauricio, Bouslimani, Amina, Panitchpakdi, Morgan, Linck, Annabell, Guan, Changhui, Oh, Julia, Dorrestein, Pieter C., Bode, Helge B., Pevzner, Pavel A., Mohimani, Hosein

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Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery av Behsaz, Bahar, Bode, Edna, Gurevich, Alexey, Shi, Yan-Ni, Grundmann, Florian, Acharya, Deepa, Caraballo-Rodríguez, Andrés Mauricio, Bouslimani, Amina, Panitchpakdi, Morgan, Linck, Annabell, Guan, Changhui, Oh, Julia, Dorrestein, Pieter C., Bode, Helge B., Pevzner, Pavel A., Mohimani, Hosein

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing av Bankevich, Anton, Nurk, Sergey, Antipov, Dmitry, Gurevich, Alexey A., Dvorkin, Mikhail, Kulikov, Alexander S., Lesin, Valery M., Nikolenko, Sergey I., Pham, Son, Prjibelski, Andrey D., Pyshkin, Alexey V., Sirotkin, Alexander V., Vyahhi, Nikolay, Tesler, Glenn, Alekseyev, Max A., Pevzner, Pavel A.

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Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products av Nurk, Sergey, Bankevich, Anton, Antipov, Dmitry, Gurevich, Alexey A., Korobeynikov, Anton, Lapidus, Alla, Prjibelski, Andrey D., Pyshkin, Alexey, Sirotkin, Alexander, Sirotkin, Yakov, Stepanauskas, Ramunas, Clingenpeel, Scott R., Woyke, Tanja, Mclean, Jeffrey S., Lasken, Roger, Tesler, Glenn, Alekseyev, Max A., Pevzner, Pavel A.

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Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen av Garg, Neha, Zeng, Yi, Edlund, Anna, Melnik, Alexey V., Sanchez, Laura M., Mohimani, Hosein, Gurevich, Alexey, Miao, Vivian, Schiffler, Stefan, Lim, Yan Wei, Luzzatto-Knaan, Tal, Cai, Shengxin, Rohwer, Forest, Pevzner, Pavel A., Cichewicz, Robert H., Alexandrov, Theodore, Dorrestein, Pieter C.

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A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria av Leão, Tiago, Wang, Mingxun, Moss, Nathan, da Silva, Ricardo, Sanders, Jon, Nurk, Sergey, Gurevich, Alexey, Humphrey, Gregory, Reher, Raphael, Zhu, Qiyun, Belda-Ferre, Pedro, Glukhov, Evgenia, Whitner, Syrena, Alexander, Kelsey L., Rex, Robert, Pevzner, Pavel, Dorrestein, Pieter C., Knight, Rob, Bandeira, Nuno, Gerwick, William H., Gerwick, Lena

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MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities av Cao, Liu, Gurevich, Alexey, Alexander, Kelsey L., Naman, C. Benjamin, Leão, Tiago, Glukhov, Evgenia, Luzzatto-Knaan, Tal, Vargas, Fernando, Quinn, Robby, Bouslimani, Amina, Nothias, Louis Felix, Singh, Nitin K., Sanders, Jon G., Benitez, Rodolfo A. S., Thompson, Luke R., Hamid, Md-Nafiz, Morton, James T., Mikheenko, Alla, Shlemov, Alexander, Korobeynikov, Anton, Friedberg, Iddo, Knight, Rob, Venkateswaran, Kasthuri, Gerwick, William H., Gerwick, Lena, Dorrestein, Pieter C., Pevzner, Pavel A., Mohimani, Hosein

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