Ngā hua rapu kaituhi :: APM

1

Extracting a Biologically Relevant Latent Space from Cancer Transcriptomes with Variational Autoencoders mā Gregory P. Way, Casey S. Greene

I whakaputaina 2017

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Pré-impressão

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2

Extracting a biologically relevant latent space from cancer transcriptomes with variational autoencoders mā Gregory P. Way, Casey S. Greene

I whakaputaina 2017

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Artigo

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3

Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations mā Gregory P. Way, Michael Zietz, Vincent Rubinetti, Daniel Himmelstein, Casey S. Greene

I whakaputaina 2020

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Artigo

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4

Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic mā Yuen Ler Chow, Shantanu Singh, Anne E. Carpenter, Gregory P. Way

I whakaputaina 2022

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Artigo

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5

Evolution and impact of high content imaging mā Gregory P. Way, Heba Sailem, Steven Shave, Richard Kasprowicz, Neil O. Carragher

I whakaputaina 2023

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

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6

Challenges and Opportunities in Studying the Epidemiology of Ovarian Cancer Subtypes mā Jennifer A. Doherty, Lauren C. Peres, Chen Wang, Gregory P. Way, Casey S. Greene, Joellen M. Schildkraut

I whakaputaina 2017

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Artigo

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7

Sharing biological data: why, when, and how mā Samantha L. Wilson, Gregory P. Way, Wout Bittremieux, Jean‐Paul Armache, Melissa Haendel, Michael M. Hoffman

I whakaputaina 2021

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Editorial

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8

Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes mā Gregory P. Way, James Rudd, Chen Wang, Habib Hamidi, Brooke L. Fridley, Gottfried E. Konecny, Ellen L. Goode, Casey S. Greene, Jennifer A. Doherty

I whakaputaina 2016

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Artigo

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9

A versatile information retrieval framework for evaluating profile strength and similarity mā Alexandr A. Kalinin, John Arévalo, Loan Vulliard, Erik Serrano, Hillary Tsang, Michael Bornholdt, Bartek Rajwa, Anne E. Carpenter, Gregory P. Way, Shantanu Singh

I whakaputaina 2024

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10

Predicting cell health phenotypes using image-based morphology profiling mā Gregory P. Way, Maria Kost‐Alimova, Tsukasa Shibue, William F. Harrington, Stanley Gill, Federica Piccioni, Tim Becker, Hamdah Shafqat-Abbasi, William C. Hahn, Anne E. Carpenter, Francisca Vázquez, Shantanu Singh

I whakaputaina 2021

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Artigo

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11

Epigenomic profiling of neuroblastoma cell lines mā Kristen Upton, Apexa Modi, Khushbu Patel, Nathan M. Kendsersky, Karina L. Conkrite, Robyn T. Sussman, Gregory P. Way, Rebecca N. Adams, Gregory I. Sacks, Paolo Fortina, Sharon J. Diskin, John M. Maris, Jo Lynne Rokita

I whakaputaina 2020

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Artigo

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12

Immune landscapes associated with different glioblastoma molecular subtypes mā Maria Martinez‐Lage, Timothy M. Lynch, Yingtao Bi, Carolina Cocito, Gregory P. Way, Sharmistha Pal, Josephine Haller, Rachel Yan, Amy Ziober, Aivi T. Nguyen, Manoj Kandpal, Donald M. O’Rourke, Jeffrey P. Greenfield, Casey S. Greene, Ramana V. Davuluri, Nadia Dahmane

I whakaputaina 2019

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Artigo

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13

A field guide to cultivating computational biology mā Gregory P. Way, Casey S. Greene, Piero Carninci, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley, Sara J.C. Gosline, Kim‐Anh Lê Cao, Jerry Lee, Luigi Marchionni, Nicolas Robine, Suzanne Sindi, Fabian J. Theis, Jean Yang, Anne E. Carpenter, Elana J. Fertig

I whakaputaina 2021

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

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14

High-dimensional phenotyping to define the genetic basis of cellular morphology mā Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A. Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P. Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin Eggan, Marzieh Haghighi, Steven A. McCarroll, Luke J. O’Connor, Anne E. Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri

I whakaputaina 2024

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Artigo

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15

A genome-wide atlas of human cell morphology mā Meraj Ramezani, Julia Bauman, Avtar Singh, Erin Weisbart, John Yong, María E. Lozada, Gregory P. Way, Sanam L. Kavari, Celeste Diaz, Marzieh Haghighi, Thiago M. Batista, Joaquín Pérez‐Schindler, Melina Claussnitzer, Shantanu Singh, Beth A. Cimini, Paul C. Blainey, Anne E. Carpenter, Calvin H. Jan, James T. Neal

I whakaputaina 2023

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Pré-impressão

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16

Morphology and gene expression profiling provide complementary information for mapping cell state mā Gregory P. Way, Ted Natoli, Adeniyi Adeboye, Lev Litichevskiy, Andrew X. Yang, Xiaodong Lü, Juan Carlos Caicedo, Beth A. Cimini, Kyle W. Karhohs, David J. Logan, Mohammad Hossein Rohban, Maria Kost‐Alimova, Kate Hartland, Michael Bornholdt, Srinivas Niranj Chandrasekaran, Marzieh Haghighi, Erin Weisbart, Shantanu Singh, Aravind Subramanian, Anne E. Carpenter

I whakaputaina 2022

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Artigo

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17

A genome-wide atlas of human cell morphology mā Meraj Ramezani, Erin Weisbart, Julia Bauman, Avtar Singh, John Yong, María E. Lozada, Gregory P. Way, Sanam L. Kavari, Celeste Diaz, Eddy Leardini, Gunjan Jetley, Jenlu Pagnotta, Marzieh Haghighi, Thiago M. Batista, Joaquín Pérez‐Schindler, Melina Claussnitzer, Shantanu Singh, Beth A. Cimini, Paul C. Blainey, Anne E. Carpenter, Calvin H. Jan, James T. Neal

I whakaputaina 2025

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Artigo

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18

Reproducible image-based profiling with Pycytominer mā Erik Serrano, Srinivas Niranj Chandrasekaran, David Bunten, Kenneth I. Brewer, Jenna Tomkinson, Roshan Kern, Michael Bornholdt, Stephen J. Fleming, Ruifan Pei, John Arévalo, Hillary Tsang, Vincent Rubinetti, Callum Tromans‐Coia, Tim Becker, Erin Weisbart, Charlotte Bunne, Alexandr A. Kalinin, Rebecca A. Senft, Stephen J. Taylor, Nasim Jamali, Adeniyi Adeboye, Hamdah Shafqat Abbasi, Allen Goodman, Juan C. Caicedo, Anne E. Carpenter, Beth A. Cimini, Shantanu Singh, Gregory P. Way

I whakaputaina 2025

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Artigo

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19

Genome-wide association study implicates novel loci and reveals candidate effector genes for longitudinal pediatric bone accrual mā Diana L. Cousminer, Yadav Wagley, James A. Pippin, Ahmed Elhakeem, Gregory P. Way, Matthew C. Pahl, Shana E. McCormack, Alessandra Chesi, Jonathan A. Mitchell, Joseph M. Kindler, Denis Baird, April Hartley, Laura D Howe, Heidi J. Kalkwarf, Joan M. Lappe, Sumei Lu, Michelle E. Leonard, Matthew E. Johnson, Hákon Hákonarson, Vicente Gilsanz, John Shepherd, Sharon E. Oberfield, Casey S. Greene, Andrea Kelly, Debbie A. Lawlor, Benjamin F. Voight, Andrew D. Wells, Babette S. Zemel, Kurt D. Hankenson, Struan F.A. Grant

I whakaputaina 2021

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Artigo

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20

Opportunities and obstacles for deep learning in biology and medicine mā Travers Ching, Daniel Himmelstein, Brett K. Beaulieu‐Jones, Alexandr A. Kalinin, T. Brian, Gregory P. Way, Enrico Ferrero, Paul‐Michael Agapow, Michael Zietz, Michael M. Hoffman, Wei Xie, Gail Rosen, Benjamin J. Lengerich, Johnny Israeli, Jack Lanchantin, Stephen Woloszynek, Anne E. Carpenter, Avanti Shrikumar, Jinbo Xu, Evan M. Cofer, Christopher A. Lavender, Srinivas C. Turaga, Amr M. Alexandari, Zhiyong Lu, David J. Harris, David DeCaprio, Yanjun Qi, Anshul Kundaje, Yifan Peng, Laura K. Wiley, Marwin Segler, Simina M. Boca, S. Joshua Swamidass, Austin Huang, Anthony Gitter, Casey S. Greene

I whakaputaina 2018

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Revisão

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