Søgeresultater - Graham Heimberg

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  1. 1
    Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing

    Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing af Graham Heimberg, Rajat Bhatnagar, Hana El‐Samad, Matt Thomson

    Udgivet 2016
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  2. 2
    Transcription Factor Competition Allows Embryonic Stem Cells to Distinguish Authentic Signals from Noise

    Transcription Factor Competition Allows Embryonic Stem Cells to Distinguish Authentic Signals from Noise af Cameron Sokolik, Yanxia Liu, David Bauer, Jade McPherson, Michael Broeker, Graham Heimberg, Lei S. Qi, David A. Sivak, Matt Thomson

    Udgivet 2015
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  3. 3
    Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophages

    Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophages af Graham Heimberg, Tony Kuo, Daryle J. DePianto, Tobias Heigl, Nathaniel Diamant, Omar Salem, Gabriele Scalia, Tommaso Biancalani, Shannon J. Turley, Jason R. Rock, Héctor Corrada Bravo, Josh Kaminker, Jason A. Vander Heiden, Aviv Regev

    Udgivet 2023
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  4. 4
    Identification of markers for the isolation of neuron-specific extracellular vesicles

    Identification of markers for the isolation of neuron-specific extracellular vesicles af Dmitry Ter‐Ovanesyan, Sara Whiteman, Tal Gilboa, Emma J. K. Kowal, Wendy Trieu, Siddharth Iyer, Bogdan Budnik, Clarissa May Babila, Graham Heimberg, Michael Burgess, Hasmik Keshishian, Steven A. Carr, Aviv Regev, George M. Church, David R. Walt

    Udgivet 2024
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  5. 5
    Specific Gene Repression by CRISPRi System Transferred through Bacterial Conjugation

    Specific Gene Repression by CRISPRi System Transferred through Bacterial Conjugation af Weiyue Ji, Derrick Lee, Eric B. Wong, Priyanka Dadlani, David Dinh, Verna Huang, Kendall Kearns, Sherry Teng, Susan Chen, John Haliburton, Graham Heimberg, Benjamin M. Heineike, Anusuya Ramasubramanian, Thomas Stevens, Kara J. Helmke, Veronica Zepeda, Lei S. Qi, Wendell A. Lim

    Udgivet 2014
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  6. 6
    Plasma proteomics reveals tissue-specific cell death and mediators of cell-cell interactions in severe COVID-19 patients

    Plasma proteomics reveals tissue-specific cell death and mediators of cell-cell interactions in severe COVID-19 patients af Michael R. Filbin, Arnav Mehta, Alexis M. Schneider, Kyle R. Kays, Jamey Guess, Matteo Gentili, Bánk G. Fenyves, Nicole C. Charland, Anna L.K. Gonye, Irena Gushterova, Hargun K. Khanna, Thomas J. LaSalle, Kendall M. Lavin-Parsons, Brendan M. Lilly, Carl L. Lodenstein, Kasidet Manakongtreecheep, Justin Margolin, Brenna McKaig, Maricarmen Rojas-López, Brian C. Russo, Nihaarika Sharma, Jessica Tantivit, Molly Thomas, Robert E. Gerszten, Graham Heimberg, Paul Hoover, David Lieb, Brian Lin, Debby Ngo, Karin Pelka, Miguel Reyes, Christopher S. Smillie, Avinash Waghray, Thomas E. Wood, Amanda S. Zajac, Lori L. Jennings, Ida Grundberg, Roby P. Bhattacharyya, Blair A. Parry, Alexandra–Chloé Villani, Moshe Sade-Feldman, Nir Hacohen, Marcia B. Goldberg

    Udgivet 2020
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  7. 7
    Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions

    Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions af Michael R. Filbin, Arnav Mehta, Alexis M. Schneider, Kyle R. Kays, Jamey Guess, Matteo Gentili, Bánk G. Fenyves, Nicole C. Charland, Anna L.K. Gonye, Irena Gushterova, Hargun K. Khanna, Thomas J. LaSalle, Kendall M. Lavin-Parsons, Brendan M. Lilley, Carl L. Lodenstein, Kasidet Manakongtreecheep, Justin Margolin, Brenna McKaig, Maricarmen Rojas-López, Brian C. Russo, Nihaarika Sharma, Jessica Tantivit, Molly Thomas, Robert E. Gerszten, Graham Heimberg, Paul Hoover, David Lieb, Brian Lin, Debby Ngo, Karin Pelka, Miguel Reyes, Christopher S. Smillie, Avinash Waghray, Thomas E. Wood, Amanda S. Zajac, Lori L. Jennings, Ida Grundberg, Roby P. Bhattacharyya, Blair A. Parry, Alexandra‐Chloé Villani, Moshe Sade-Feldman, Nir Hacohen, Marcia B. Goldberg

    Udgivet 2021
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  8. 8
    Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells

    Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlig... af Christoph Muus, Malte D. Luecken, Gökcen Eraslan, Avinash Waghray, Graham Heimberg, Lisa Sikkema, Yoshihiko Kobayashi, Eeshit Dhaval Vaishnav, Ayshwarya Subramanian, Christopher Smilie, Karthik Jagadeesh, Thu Elizabeth Duong, Evgenij Fiškin, Elena Torlai Triglia, Meshal Ansari, Peiwen Cai, Brian Lin, Justin Buchanan, Sijia Chen, Jian Shu, Adam L. Haber, Hattie Chung, Daniel T. Montoro, Taylor Adams, Hananeh Aliee, Jane Samuel, Allon Zaneta Andrusivova, Ilias Angelidis, Orr Ashenberg, Kevin Baßler, Christophe Bécavin, Inbal Benhar, Joseph Bergenstråhle, Ludvig Bergenstråhle, Liam Bolt, Emelie Braun, Linh T. Bui, Mark Chaffin, Evgeny Chichelnitskiy, Joshua Chiou, Thomas M. Conlon, Michael S. Cuoco, Marie Deprez, David S. Fischer, Astrid Gillich, Joshua Gould, Minzhe Guo, Austin J. Gutierrez, Arun C Habermann, Tyler Harvey, Peng He, Xiaomeng Hou, Lijuan Hu, Alok Jaiswal, Peiyong Jiang, Theodoros Kapellos, Christin S Kuo, Ludvig Larsson, Michael Leney-Greene, Kyungtae Lim, Monika Litviňuková, Lu Ji, Leif S. Ludwig, Wendy Luo, Henrike Maatz, Elo Madissoon, Lira Mamanova, Kasidet Manakongtreecheep, Charles‐Hugo Marquette, Ian Mbano, Alexi McAdams, Ross J. Metzger, Ahmad N. Nabhan, Sarah K. Nyquist, Lolita Penland, Olivier Poirion, Sergio Poli, CanCan Qi, Rachel Queen, Daniel Reichart, Iván O. Rosas, Jonas C. Schupp, Rahul Sinha, Rene Sit, Kamil Slowikowski, Michal Slyper, Neal Smith, Alex Sountoulidis, Maximilian Strunz, Dawei Sun, Carlos Talavera‐López, Peng Tan, Jessica Tantivit, Kyle J. Travaglini, Nathan R. Tucker, Katherine Vernon, Marc H. Wadsworth, Julia Waldman, Xiuting Wang, Wenjun Yan

    Udgivet 2020
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  9. 9
    Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

    Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics af Christoph Muus, Malte D. Luecken, Gökcen Eraslan, Lisa Sikkema, Avinash Waghray, Graham Heimberg, Yoshihiko Kobayashi, Eeshit Dhaval Vaishnav, Ayshwarya Subramanian, Christopher S. Smillie, Karthik A. Jagadeesh, Thu Elizabeth Duong, Evgenij Fiškin, Elena Torlai Triglia, Meshal Ansari, Peiwen Cai, Brian Lin, Justin Buchanan, Sijia Chen, Jian Shu, Adam L. Haber, Hattie Chung, Daniel T. Montoro, Taylor Adams, Hananeh Aliee, Samuel J. Allon, Žaneta Andrusivová, Ilias Angelidis, Orr Ashenberg, Kevin Baßler, Christophe Bécavin, Inbal Benhar, Joseph Bergenstråhle, Ludvig Bergenstråhle, Liam Bolt, Emelie Braun, Linh T. Bui, Steven Callori, Mark Chaffin, Evgeny Chichelnitskiy, Joshua Chiou, Thomas M. Conlon, Michael S. Cuoco, Anna Cuomo, Marie Deprez, Grant Duclos, Denise Fine, David S. Fischer, Shila Ghazanfar, Astrid Gillich, Bruno Giotti, Joshua Gould, Minzhe Guo, Austin J. Gutierrez, Arun C. Habermann, Tyler Harvey, Peng He, Xiaomeng Hou, Lijuan Hu, Yan Hu, Alok Jaiswal, Lu Ji, Peiyong Jiang, Theodoros Kapellos, Christin S. Kuo, Ludvig Larsson, Michael Leney-Greene, Kyungtae Lim, Monika Litviňuková, Leif S. Ludwig, Soeren Lukassen, Wendy Luo, Henrike Maatz, Elo Madissoon, Lira Mamanova, Kasidet Manakongtreecheep, Sylvie Leroy, Christoph H. Mayr, Ian Mbano, Alexi McAdams, Ahmad N. Nabhan, Sarah K. Nyquist, Lolita Penland, Olivier Poirion, Sergio Poli, Cancan Qi, Rachel Queen, Daniel Reichart, Iván O. Rosas, Jonas C. Schupp, Conor Shea, Xingyi Shi, Rahul Sinha, Rene Sit, Kamil Slowikowski, Michal Slyper, Neal P. Smith, Alex Sountoulidis, Maximilian Strunz, Travis Sullivan

    Udgivet 2021
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  10. 10
    A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2

    A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2 af Toni Delorey, Carly G.K. Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe, Domenic Abbondanza, Stephen J. Fleming, Ayshwarya Subramanian, Daniel T. Montoro, Karthik A. Jagadeesh, Kushal K. Dey, Pritha Sen, Michal Slyper, Yered Pita-Juárez, Devan Phillips, Zohar Bloom-Ackerman, Nick Barkas, Andrea Ganna, James Gomez, Erica Normandin, Pourya Naderi Yeganeh, Yury Popov, Siddharth S. Raju, Sebastian Niezen, Linus Tsai, Katherine J. Siddle, Malika Sud, Victoria M. Tran, Shamsudheen Karuthedath Vellarikkal, Liat Amir-Zilberstein, Deepak Atri, Joseph Beechem, Olga R. Brook, Jonathan H. Chen, Prajan Divakar, Phylicia Dorceus, J Engreitz, Adam L. Essene, Donna M. Fitzgerald, Robin Fropf, Steven Gazal, Joshua Gould, John Grzyb, Tyler Harvey, Jonathan L. Hecht, Tyler Hether, Judit Jané‐Valbuena, Michael Leney-Greene, Hui Ma, Cristin McCabe, Daniel E. McLoughlin, Eric Miller, Christoph Muus, Mari Niemi, Robert F. Padera, Liuliu Pan, Deepti Pant, Carmel Pe’er, Jenna Pfiffner-Borges, Christopher J. Pinto, Jacob Plaisted, Jason Reeves, Marty Ross, Melissa A. Rudy, Erroll H. Rueckert, Michelle Siciliano, Alexander Sturm, Ellen Todres, Avinash Waghray, Sarah Warren, Shuting Zhang, Daniel R. Zollinger, Lisa A. Cosimi, Rajat M. Gupta, Nir Hacohen, Yoshihide Hayashizaki, Alkes L. Price, Jayaraj Rajagopal, Purushothama Rao Tata, Stefan Riedel, Gyöngyi Szabó, Timothy L. Tickle, Deborah T. Hung, Pardis C. Sabeti, Richard Novák, Robert Rogers, Donald E. Ingber, Z. Gordon Jiang, Dejan Juric, Mehrtash Babadi, Samouil L. Farhi, James R. Stone, Ioannis S. Vlachos, Isaac H. Solomon, Orr Ashenberg, Caroline Porter, Bo Li, Alex K. Shalek, Alexandra–Chloé Villani

    Udgivet 2021
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  11. 11
    COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

    COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets af Toni Delorey, Carly G.K. Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe, Domenic Abbondanza, Stephen J. Fleming, Ayshwarya Subramanian, Daniel T. Montoro, Karthik A. Jagadeesh, Kushal K. Dey, Pritha Sen, Michal Slyper, Yered Pita-Juárez, Devan Phillips, Jana Biermann, Zohar Bloom‐Ackermann, Nikolaos Barkas, Andrea Ganna, James Gomez, Johannes C. Melms, Igor Katsyv, Erica Normandin, Pourya Naderi Yeganeh, Yury Popov, Siddharth S. Raju, Sebastian Niezen, Linus Tsai, Katherine J. Siddle, Malika Sud, Victoria M. Tran, Shamsudheen Karuthedath Vellarikkal, Yiping Wang, Liat Amir-Zilberstein, Deepak Atri, Joseph Beechem, Olga R. Brook, Jonathan H. Chen, Prajan Divakar, Phylicia Dorceus, J Engreitz, Adam L. Essene, Donna M. Fitzgerald, Robin Fropf, Steven Gazal, Joshua Gould, John Grzyb, Tyler Harvey, Jonathan L. Hecht, Tyler Hether, Judit Jané‐Valbuena, Michael Leney-Greene, Hui Ma, Cristin McCabe, Daniel E. McLoughlin, Eric Miller, Christoph Muus, Mari Niemi, Robert F. Padera, Liuliu Pan, Deepti Pant, Carmel Pe’er, Jenna Pfiffner-Borges, Christopher J. Pinto, Jacob Plaisted, Jason Reeves, Marty Ross, Melissa A. Rudy, Erroll H. Rueckert, Michelle Siciliano, Alexander Sturm, Ellen Todres, Avinash Waghray, Sarah Warren, Shuting Zhang, Daniel R. Zollinger, Lisa A. Cosimi, Rajat M. Gupta, Nir Hacohen, Hanina Hibshoosh, Yoshihide Hayashizaki, Alkes L. Price, Jayaraj Rajagopal, Purushothama Rao Tata, Stefan Riedel, Gyöngyi Szabó, Timothy L. Tickle, Patrick T. Ellinor, Deborah T. Hung, Pardis C. Sabeti, Richard Novák, Robert Rogers, Donald E. Ingber, Z. Gordon Jiang, Dejan Juric, Mehrtash Babadi, Samouil L. Farhi, Benjamin Izar, James R. Stone

    Udgivet 2021
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