Search Results - Gordon K. Smyth

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  1. 1
    Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

    Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments by Gordon K. Smyth

    Published 2004
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  2. 2
    Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn

    Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn by Belinda Phipson, Gordon K. Smyth

    Published 2010
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  3. 3
    limmaGUI: A graphical user interface for linear modeling of microarray data

    limmaGUI: A graphical user interface for linear modeling of microarray data by James Wettenhall, Gordon K. Smyth

    Published 2004
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  4. 4
    Camera: a competitive gene set test accounting for inter-gene correlation

    Camera: a competitive gene set test accounting for inter-gene correlation by Di Wu, Gordon K. Smyth

    Published 2012
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  5. 5
    diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data

    diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data by Aaron T. L. Lun, Gordon K. Smyth

    Published 2015
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  6. 6
    Normalization of cDNA microarray data

    Normalization of cDNA microarray data by Gordon K. Smyth, Terence P. Speed

    Published 2003
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  7. 7
    Moderated statistical tests for assessing differences in tag abundance

    Moderated statistical tests for assessing differences in tag abundance by Mark D. Robinson, Gordon K. Smyth

    Published 2007
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  8. 8
    De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly

    De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly by Aaron T. L. Lun, Gordon K. Smyth

    Published 2014
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  9. 9
    csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows

    csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows by Aaron T. L. Lun, Gordon K. Smyth

    Published 2015
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  10. 10
    The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

    The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote by Yang Liao, Gordon K. Smyth, Wei Shi

    Published 2013
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  11. 11
    Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips

    Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips by Wei Shi, Alicia Oshlack, Gordon K. Smyth

    Published 2010
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  12. 12
    Testing significance relative to a fold-change threshold is a TREAT

    Testing significance relative to a fold-change threshold is a TREAT by Davis J. McCarthy, Gordon K. Smyth

    Published 2009
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  13. 13
    featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

    featureCounts: an efficient general purpose program for assigning sequence reads to genomic features by Yang Liao, Gordon K. Smyth, Wei Shi

    Published 2013
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  14. 14
    Use of within-array replicate spots for assessing differential expression in microarray experiments

    Use of within-array replicate spots for assessing differential expression in microarray experiments by Gordon K. Smyth, Jean Michaud, Hamish S. Scott

    Published 2005
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  15. 15
    The R package <i>Rsubread</i> is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

    The R package <i>Rsubread</i> is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads by Yang Liao, Gordon K. Smyth, Wei Shi

    Published 2018
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  16. 16
    The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

    The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads by Yang Liao, Gordon K. Smyth, Wei Shi

    Published 2019
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  17. 17
    From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline

    From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline by Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth

    Published 2016
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  18. 18
    From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline

    From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline by Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth

    Published 2016
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  19. 19
    Microarray background correction: maximum likelihood estimation for the normal-exponential convolution

    Microarray background correction: maximum likelihood estimation for the normal-exponential convolution by Jeremy D. Silver, Matthew E. Ritchie, Gordon K. Smyth

    Published 2008
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  20. 20
    Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

    Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation by Davis J. McCarthy, Yunshun Chen, Gordon K. Smyth

    Published 2012
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