Výsledky vyhledávání - Gloria Sheynkman

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  1. 1
    Proteome-Scale Human Interactomics

    Proteome-Scale Human Interactomics Autor Katja Luck, Gloria Sheynkman, Ivy Zhang, Marc Vidal

    Vydáno 2017
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  2. 2
    Long-read proteogenomics to connect disease-associated sQTLs to the protein isoform effectors of disease

    Long-read proteogenomics to connect disease-associated sQTLs to the protein isoform effectors of disease Autor Abdullah Abood, Larry D. Mesner, Erin D. Jeffery, Mayank Murali, Micah Lehe, Jamie Saquing, Charles R. Farber, Gloria Sheynkman

    Vydáno 2024
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  3. 3
    Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data

    Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data Autor Vladimir B. C. de Souza, Ben T. Jordan, Elizabeth Tseng, Elizabeth A. Nelson, Karen K. Hirschi, Gloria Sheynkman, Mark D. Robinson

    Vydáno 2022
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  4. 4
    The lncRNA SLNCR Recruits the Androgen Receptor to EGR1-Bound Genes in Melanoma and Inhibits Expression of Tumor Suppressor p21

    The lncRNA SLNCR Recruits the Androgen Receptor to EGR1-Bound Genes in Melanoma and Inhibits Expression of Tumor Suppressor p21 Autor Karyn Schmidt, Johanna S. Carroll, Elaine Yee, Dolly D. Thomas, León Wert-Lamas, Steven C. Neier, Gloria Sheynkman, Justin Ritz, Carl D. Novina

    Vydáno 2019
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  5. 5
    Biosurfer for systematic tracking of regulatory mechanisms leading to protein isoform diversity

    Biosurfer for systematic tracking of regulatory mechanisms leading to protein isoform diversity Autor Mayank Murali, Jamie Saquing, Senbao Lu, Ziyang Gao, Emily F. Watts, Ben T. Jordan, Zachary Peters Wakefield, Ana Fiszbein, David R. Cooper, Peter J. Castaldi, Dmitry Korkin, Gloria Sheynkman

    Vydáno 2025
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  6. 6
    Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy

    Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy Autor Guangyuan Li, Shweta Mahajan, Siyuan Ma, Erin D. Jeffery, Xuan Zhang, Anukana Bhattacharjee, Meenakshi Venkatasubramanian, Matthew T. Weirauch, Emily R. Miraldi, H. Leighton Grimes, Gloria Sheynkman, Tamara Tilburgs, Nathan Salomonis

    Vydáno 2024
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  7. 7
    Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing

    Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing Autor Seyed Yahya Anvar, Guy Allard, Elizabeth Tseng, Gloria Sheynkman, Eleonora de Klerk, Martijn Vermaat, Raymund Yin, Hans Johansson, Yavuz Ariyürek, Johan T. den Dunnen, Stephen W. Turner, Peter A.C. ‘t Hoen

    Vydáno 2018
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  8. 8
    ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms

    ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms Autor Gloria Sheynkman, Katharine S. Tuttle, Florent Laval, Elizabeth Tseng, Jason G. Underwood, Liang Yu, Da Dong, Melissa Smith, Robert Sebra, Luc Willems, Tong Hao, Michael A. Calderwood, David E. Hill, Marc Vidal

    Vydáno 2020
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  9. 9
    Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain

    Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain Autor Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark Diekhans, Jordan Marrocco, Jennifer Balacco, Lishomwa C. Ndhlovu, Teresa A. Milner, Olivier Fédrigo, Erich D. Jarvis, Gloria Sheynkman, Dmitry Korkin, M. Elizabeth Ross, Hagen Tilgner

    Vydáno 2024
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  10. 10
    Endothelial cell cycle state determines propensity for arterial-venous fate

    Endothelial cell cycle state determines propensity for arterial-venous fate Autor Nicholas W. Chavkin, Gaël Genet, Mathilde Poulet, Erin D. Jeffery, Corina Marziano, Nafiisha Genet, Hema Vasavada, Elizabeth A. Nelson, Bipul R. Acharya, Anupreet Kour, Jordon Aragon, Stephanie P. McDonnell, Mahalia Huba, Gloria Sheynkman, Kenneth Walsh, Karen K. Hirschi

    Vydáno 2022
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  11. 11
    Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing

    Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing Autor Szi Kay Leung, Aaron R. Jeffries, Isabel Castanho, Ben T. Jordan, Karen Moore, Jonathan Davies, Emma Dempster, Nicholas J. Bray, Paul O’Neill, Elizabeth Tseng, Zeshan Ahmed, David Collier, Erin D. Jeffery, Shyam Prabhakar, Leonard C. Schalkwyk, Connor Jops, Michael J. Gandal, Gloria Sheynkman, Eilís Hannon, Jonathan Mill

    Vydáno 2021
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  12. 12
    Genetic Regulation of SMC Gene Expression and Splicing Predict Causal CAD Genes

    Genetic Regulation of SMC Gene Expression and Splicing Predict Causal CAD Genes Autor Rédouane Aherrahrou, Dillon Lue, R. Noah Perry, Yonathan Tamrat Aberra, Mohammad Daud Khan, Joon Yuhl Soh, Tiit Örd, Prosanta Singha, Qianyi Yang, Huda Gilani, Ernest Diez Benavente, Doris Wong, Jameson Hinkle, Lijiang Ma, Gloria Sheynkman, Hester M. den Ruijter, Clint L. Miller, Johan Björkegren, Minna U. Kaikkonen, Mete Civelek

    Vydáno 2023
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  13. 13
    The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets

    The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets Autor Mark P. Keller, Pradyut K. Paul, Mary E. Rabaglia, Donnie S. Stapleton, Kathryn L. Schueler, Aimee Teo Broman, Shuyun Isabella Ye, Ning Leng, Christopher Brandon, Elias Chaibub Neto, Christopher Plaisier, Shane P. Simonett, Melkam A. Kebede, Gloria Sheynkman, Mark A. Klein, Nitin S. Baliga, Lloyd M. Smith, Karl W. Broman, Brian S. Yandell, Christina Kendziorski, Alan Attie

    Vydáno 2016
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  14. 14
    Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms

    Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms Autor L. Lambourne, Kaia Mattioli, Clarissa Stephanie Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal, Anna Berenson, Kerstin Spirohn-Fitzgerald, Anukana Bhattacharjee, Elisabeth Rothman, Shaleen Shrestha, Florent Laval, Zhipeng Yang, Deepa Bisht, Jared Allan Sewell, Guangyuan Li, Anisa V. Prasad, Sabrina K. Phanor, Ryan Lane, Devlin M. Campbell, Toby Hunt, Dawit Balcha, Marinella Gebbia, Jean‐Claude Twizere, Tong Hao, Adam Frankish, Josh A. Riback, Nathan Salomonis, Michael A. Calderwood, David E. Hill, Nidhi Sahni, Marc Vidal, Martha L. Bulyk, Juan I. Fuxman Bass

    Vydáno 2024
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  15. 15
    AI-readiness for Biomedical Data: Bridge2AI Recommendations

    AI-readiness for Biomedical Data: Bridge2AI Recommendations Autor Tim W. Clark, J. Harry Caufield, Jillian A. Parker, Mohammad Sadnan Al Manir, Edilberto Amorim, James A. Eddy, Nayoon Gim, Brian Gow, Wesley Goar, Melissa Haendel, Jan N. Hansen, Nomi L. Harris, Henning Hermjakob, Marcin P. Joachimiak, G. K. S. Jordan, In‐Hee Lee, Shannon K. McWeeney, Camille Nebeker, Milen Nikolov, Jamie Shaffer, Nathan C. Sheffield, Gloria Sheynkman, James Stevenson, Jake Y. Chen, Chris Mungall, Alex H. Wagner, Sek Won Kong, Satrajit Ghosh, Bhavesh Patel, Andrew E. Williams, Monica Muñoz‐Torres

    Vydáno 2024
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  16. 16
    Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing

    Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing Autor Xinping Yang, Jasmin Coulombe‐Huntington, Shuli Kang, Gloria Sheynkman, Tong Hao, Aaron Richardson, Song Sun, Fan Yang, Yun Shen, Ryan R. Murray, Kerstin Spirohn, Bridget E. Begg, Miquel Duran‐Frigola, Andrew MacWilliams, Samuel Pevzner, Quan Zhong, Shelly A. Wanamaker, Stanley Tam, Lila Ghamsari, Nidhi Sahni, S. Stephen Yi, Maria Rodriguez, Dawit Balcha, Guihong Tan, Michael Costanzo, Brenda Andrews, Charles Boone, Xianghong Jasmine Zhou, Kourosh Salehi‐Ashtiani, Benoît Charloteaux, Alyce A. Chen, Michael A. Calderwood, Patrick Aloy, Frederick P. Roth, David E. Hill, Lilia M. Iakoucheva, Yu Xia, Marc Vidal

    Vydáno 2016
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  17. 17
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification Autor Francisco J. Pardo-Palacios, Fairlie Reese, Sílvia Carbonell Sala, Mark Diekhans, Cindy Liang, Dingjie Wang, Brian A. Williams, Matthew S. Adams, Amit K. Behera, Julien Lagarde, Haoran Li, Andrey D. Prjibelski, Gabriela Balderrama-Gutierrez, Muhammed Hasan Çelik, Maite De María, Nancy D. Denslow, Natàlia García‐Reyero, Stefan Goetz, Margaret E. Hunter, Jane Loveland, Carlos Menor, David Moraga, Jonathan M. Mudge, Hazuki Takahashi, Alison D. Tang, Ingrid Youngworth, Piero Carninci, Roderic Guigó, Hagen Tilgner, B Wold, Christopher Vollmers, Gloria Sheynkman, Adam Frankish, Kin Fai Au, Ana Conesa, A Mortazavi, Angela N. Brooks

    Vydáno 2021
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  18. 18
    A roadmap for the functional annotation of protein families: a community perspective

    A roadmap for the functional annotation of protein families: a community perspective Autor Valérie de Crécy‐Lagard, Rocío Amorín, Cecilia Arighi, Jill Babor, Alex Bateman, Ian K. Blaby, Crysten E. Blaby‐Haas, Alan Bridge, S.K. Burley, Stacey Cleveland, Lucy J. Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam M. Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, J.A. Gerlt, Joshua E. Goldford, Mark G. Gorelik, Benjamin M. Gyori, Christopher S. Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler‐Bauer, María Martin, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Chris Mungall, Darren A. Natale, William Nelson, Séan O’Donoghue, Christine Orengo, Katherine H. O’Toole, Predrag Radivojac, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova, Jeffrey D. Rudolf, Lana Saleh, Gloria Sheynkman, Francoise Thibaud-Nissen, Paul D. Thomas, Peter Uetz, David Vallenet, Erica W. Carter, Peter Weigele, Valerie Wood, Elisha M. Wood‐Charlson, Jin Xu

    Vydáno 2022
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  19. 19
    A reference map of the human binary protein interactome

    A reference map of the human binary protein interactome Autor Katja Luck, Dae‐Kyum Kim, L. Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana M. Cafarelli, Francisco Campos‐Laborie, Benoît Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, I. Kovács, Irma Lemmens, Miles W. Mee, Joseph Mellor, Carl Pollis, Carles Pons, Aaron Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet‐Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi de Rouck, Miquel Duran‐Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San‐Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander O. Tejeda, Jean‐Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger‐Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, Vincent Tropepe, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

    Vydáno 2020
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  20. 20
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification Autor Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Namrita Dhillon, Jose M. Fernandez-Gonzalez, Luis Ferrández-Peral, Natàlia García‐Reyero, Stefan Goetz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks

    Vydáno 2023
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