Search Results - Giovanni Ciriello

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  1. 1
    A review on models and algorithms for motif discovery in protein-protein interaction networks

    A review on models and algorithms for motif discovery in protein-protein interaction networks by Giovanni Ciriello, Concettina Guerra

    Published 2008
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  2. 2
    Mutual exclusivity analysis identifies oncogenic network modules

    Mutual exclusivity analysis identifies oncogenic network modules by Giovanni Ciriello, Ethan Cerami, Chris Sander, Nikolaus Schultz

    Published 2011
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  3. 3
    Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability

    Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability by Franck Raynaud, Marco Mina, Daniele Tavernari, Giovanni Ciriello

    Published 2018
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  4. 4
    Comparison of computational methods for the identification of topologically associating domains

    Comparison of computational methods for the identification of topologically associating domains by Marie Zufferey, Daniele Tavernari, Elisa Oricchio, Giovanni Ciriello

    Published 2018
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  5. 5
    Pan-Cancer Landscape of Aberrant DNA Methylation across Human Tumors

    Pan-Cancer Landscape of Aberrant DNA Methylation across Human Tumors by Sadegh Saghafinia, Marco Mina, Nicolò Riggi, Douglas Hanahan, Giovanni Ciriello

    Published 2018
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  6. 6
    AlignNemo: A Local Network Alignment Method to Integrate Homology and Topology

    AlignNemo: A Local Network Alignment Method to Integrate Homology and Topology by Giovanni Ciriello, Marco Mina, Pietro Hiram Guzzi, Mario Cannataro, Concettina Guerra

    Published 2012
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  7. 7
    CellCharter reveals spatial cell niches associated with tissue remodeling and cell plasticity

    CellCharter reveals spatial cell niches associated with tissue remodeling and cell plasticity by Marco Varrone, Daniele Tavernari, Albert Santamaria‐Martínez, Logan A. Walsh, Giovanni Ciriello

    Published 2023
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  8. 8
    Emerging landscape of oncogenic signatures across human cancers

    Emerging landscape of oncogenic signatures across human cancers by Giovanni Ciriello, Martin L. Miller, Bülent Arman Aksoy, Yasin Şenbabaoğlu, Nikolaus Schultz, Chris Sander

    Published 2013
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  9. 9
    Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations

    Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations by Özgün Babur, Mithat Gönen, Bülent Arman Aksoy, Nikolaus Schultz, Giovanni Ciriello, Chris Sander, Emek Demir

    Published 2015
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  10. 10
    Generation of tumor-targeted human T lymphocytes from induced pluripotent stem cells for cancer therapy

    Generation of tumor-targeted human T lymphocytes from induced pluripotent stem cells for cancer therapy by Maria Themeli, Christopher C. Kloss, Giovanni Ciriello, V D Fedorov, Fabiana Perna, Mithat Gönen, Michel Sadelain

    Published 2013
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  11. 11
    Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes

    Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes by Yuanlong Liu, Luca Nanni, Stéphanie Sungalee, Marie Zufferey, Daniele Tavernari, Marco Mina, Stefano Ceri, Elisa Oricchio, Giovanni Ciriello

    Published 2021
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  12. 12
    The molecular diversity of Luminal A breast tumors

    The molecular diversity of Luminal A breast tumors by Giovanni Ciriello, Rileen Sinha, Katherine A. Hoadley, Anders J. Skanderup, Boris Reva, Charles M. Perou, Chris Sander, Nikolaus Schultz

    Published 2013
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  13. 13
    Cancer Cells Retrace a Stepwise Differentiation Program during Malignant Progression

    Cancer Cells Retrace a Stepwise Differentiation Program during Malignant Progression by Sadegh Saghafinia, Krisztián Homicskó, Annunziata Di Domenico, Stephan Wullschleger, Aurel Perren, Ilaria Marinoni, Giovanni Ciriello, Iacovos P. Michael, Douglas Hanahan

    Published 2021
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  14. 14
    Histone acetylation dynamics modulates chromatin conformation and allele-specific interactions at oncogenic loci

    Histone acetylation dynamics modulates chromatin conformation and allele-specific interactions at oncogenic loci by Stéphanie Sungalee, Yuanlong Liu, Ruxandra A. Lambuta, Natalya Katanayeva, Maria Donaldson Collier, Daniele Tavernari, Sandrine Roulland, Giovanni Ciriello, Elisa Oricchio

    Published 2021
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  15. 15
    Whole-genome doubling drives oncogenic loss of chromatin segregation

    Whole-genome doubling drives oncogenic loss of chromatin segregation by Ruxandra A. Lambuta, Luca Nanni, Yuanlong Liu, Juan Díaz-Miyar, Arvind Iyer, Daniele Tavernari, Natalya Katanayeva, Giovanni Ciriello, Elisa Oricchio

    Published 2023
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  16. 16
    Pan-Cancer Analysis of Mutation Hotspots in Protein Domains

    Pan-Cancer Analysis of Mutation Hotspots in Protein Domains by Martin L. Miller, Ed Reznik, Nicholas P. Gauthier, Bülent Arman Aksoy, Anil Korkut, Jianjiong Gao, Giovanni Ciriello, Nikolaus Schultz, Chris Sander

    Published 2015
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  17. 17
    Conditional Selection of Genomic Alterations Dictates Cancer Evolution and Oncogenic Dependencies

    Conditional Selection of Genomic Alterations Dictates Cancer Evolution and Oncogenic Dependencies by Marco Mina, Franck Raynaud, Daniele Tavernari, Elena Battistello, Stéphanie Sungalee, Sadegh Saghafinia, Titouan Laessle, Francisco Sánchez-Vega, Nikolaus Schultz, Elisa Oricchio, Giovanni Ciriello

    Published 2017
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  18. 18
    Nongenetic Evolution Drives Lung Adenocarcinoma Spatial Heterogeneity and Progression

    Nongenetic Evolution Drives Lung Adenocarcinoma Spatial Heterogeneity and Progression by Daniele Tavernari, Elena Battistello, Elie Dheilly, Aaron S. Petruzzella, Marco Mina, Jessica Sordet‐Dessimoz, Solange Peters, Thorsten Krueger, David Gfeller, Nicolò Riggi, Elisa Oricchio, Igor Letovanec, Giovanni Ciriello

    Published 2021
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  19. 19
    EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains

    EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains by Maria Donaldson Collier, Stéphanie Sungalee, Marie Zufferey, Daniele Tavernari, Natalya Katanayeva, Elena Battistello, Marco Mina, Kyle M. Douglass, Timo Rey, Franck Raynaud, Suliana Manley, Giovanni Ciriello, Elisa Oricchio

    Published 2019
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  20. 20
    Synaptic proximity enables NMDAR signalling to promote brain metastasis

    Synaptic proximity enables NMDAR signalling to promote brain metastasis by Qiqun Zeng, Iacovos P. Michael, Peng Zhang, Sadegh Saghafinia, Graham Knott, Wei Jiao, Brian D. McCabe, José A. Galván, Hugh P. C. Robinson, Inti Zlobec, Giovanni Ciriello, Douglas Hanahan

    Published 2019
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