Search Results - Geoffrey I. Webb

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  1. 1
    Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs

    Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs by Khalid Mahmood, Geoffrey I. Webb, Jiangning Song, James C. Whisstock, Arun S. Konagurthu

    Published 2011
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  2. 2
    Crysalis: an integrated server for computational analysis and design of protein crystallization

    Crysalis: an integrated server for computational analysis and design of protein crystallization by Huilin Wang, Liubin Feng, Ziding Zhang, Geoffrey I. Webb, Donghai Lin, Jiangning Song

    Published 2016
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  3. 3
    Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features

    Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features by Yuan Li, Mingjun Wang, Huilin Wang, Hao Tan, Ziding Zhang, Geoffrey I. Webb, Jiangning Song

    Published 2014
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  4. 4
    GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

    GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome by Fuyi Li, Chen Li, Mingjun Wang, Geoffrey I. Webb, Yang Zhang, James C. Whisstock, Jiangning Song

    Published 2015
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  5. 5
    PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites

    PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites by Jiangning Song, Hao Tan, Andrew Perry, Tatsuya Akutsu, Geoffrey I. Webb, James C. Whisstock, Robert N. Pike

    Published 2012
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  6. 6
    GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features

    GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features by Fuyi Li, Chen Li, Jerico Revote, Yang Zhang, Geoffrey I. Webb, Jian Li, Jiangning Song, Trevor Lithgow

    Published 2016
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  7. 7
    iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites

    iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites by Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo‐Chen Chou

    Published 2018
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  8. 8
    ASPIRER: a new computational approach for identifying non-classical secreted proteins based on deep learning

    ASPIRER: a new computational approach for identifying non-classical secreted proteins based on deep learning by Xiaoyu Wang, Fuyi Li, Jing Xu, Jia Rong, Geoffrey I. Webb, Zongyuan Ge, Jian Li, Jiangning Song

    Published 2022
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  9. 9
    Cascleave: towards more accurate prediction of caspase substrate cleavage sites

    Cascleave: towards more accurate prediction of caspase substrate cleavage sites by Jiangning Song, Hao Tan, Hong‐Bin Shen, Khalid Mahmood, Sarah Boyd, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock

    Published 2010
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  10. 10
    Positive-unlabelled learning of glycosylation sites in the human proteome

    Positive-unlabelled learning of glycosylation sites in the human proteome by Fuyi Li, Zhang Yang, Anthony W. Purcell, Geoffrey I. Webb, Kuo‐Chen Chou, Trevor Lithgow, Chen Li, Jiangning Song

    Published 2019
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  11. 11
    Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only

    Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only by Jiangning Song, Hao Tan, Khalid Mahmood, Ruby H. P. Law, Ashley M. Buckle, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock

    Published 2009
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  12. 12
    POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles

    POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles by Jiawei Wang, Bingjiao Yang, Jerico Revote, André Leier, Tatiana T. Marquez‐Lago, Geoffrey I. Webb, Jiangning Song, Kuo‐Chen Chou, Trevor Lithgow

    Published 2017
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  13. 13
    Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework

    Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework by Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez‐Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo‐Chen Chou, Jiangning Song

    Published 2018
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  14. 14
    Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations

    Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations by Yue Bi, Fuyi Li, Xudong Guo, Zhikang Wang, Tong Pan, Yuming Guo, Geoffrey I. Webb, Jianhua Yao, Cangzhi Jia, Jiangning Song

    Published 2022
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  15. 15
    Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI

    Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI by Yi An, Jiawei Wang, Chen Li, André Leier, Tatiana T. Marquez‐Lago, Jonathan J. Wilksch, Yang Zhang, Geoffrey I. Webb, Jiangning Song, Trevor Lithgow

    Published 2016
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  16. 16
    SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems

    SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems by Yi An, Jiawei Wang, Chen Li, Jerico Revote, Yang Zhang, Thomas Naderer, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Trevor Lithgow, Jiangning Song

    Published 2017
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  17. 17
    PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy

    PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy by Jiangning Song, Fuyi Li, André Leier, Tatiana T. Marquez‐Lago, Tatsuya Akutsu, Gholamreza Haffari, Kuo‐Chen Chou, Geoffrey I. Webb, Robert N. Pike

    Published 2017
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  18. 18
    PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

    PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection by Jiangning Song, Huilin Wang, Jiawei Wang, André Leier, Tatiana T. Marquez‐Lago, Bingjiao Yang, Ziding Zhang, Tatsuya Akutsu, Geoffrey I. Webb, Roger J. Daly

    Published 2017
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  19. 19
    PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships

    PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships by Tong Pan, Chen Li, Yue Bi, Zhikang Wang, Robin B. Gasser, Anthony W. Purcell, Tatsuya Akutsu, Geoffrey I. Webb, Seiya Imoto, Jiangning Song

    Published 2023
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  20. 20
    Procleave: Predicting Protease-Specific Substrate Cleavage Sites by Combining Sequence and Structural Information

    Procleave: Predicting Protease-Specific Substrate Cleavage Sites by Combining Sequence and Structural Information by Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, A. Ian Smith, Tatiana T. Marquez‐Lago, Jian Li, Jiangning Song

    Published 2020
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