Resultats de la cerca - Gavin Ha

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  1. 1
    The landscape of chromosomal aberrations in breast cancer mouse models reveals driver-specific routes to tumorigenesis

    The landscape of chromosomal aberrations in breast cancer mouse models reveals driver-specific routes to tumorigenesis per Uri Ben‐David, Gavin Ha, Prasidda Khadka, Xin Jin, Bang Wong, Lude Franke, Todd R. Golub

    Publicat 2016
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  2. 2
    PyClone: statistical inference of clonal population structure in cancer

    PyClone: statistical inference of clonal population structure in cancer per Andrew Roth, Jaswinder Khattra, Damian Yap, Adrian Wan, Emma Laks, Justina Biele, Gavin Ha, Samuel Aparício, Alexandre Bouchard‐Côté, Sohrab P. Shah

    Publicat 2014
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  3. 3
    DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

    DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer per Ali Bashashati, Gholamreza Haffari, Jiarui Ding, Gavin Ha, Kenneth Lui, Jamie Rosner, David G. Huntsman, Carlos Caldas, Samuel Aparício, Sohrab P. Shah

    Publicat 2012
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  4. 4
    DNA-based copy number analysis confirms genomic evolution of PDX models

    DNA-based copy number analysis confirms genomic evolution of PDX models per Anna C. H. Hoge, Michal Getz, Anat Zimmer, Minjeong Ko, Linoy Raz, Rameen Beroukhim, Todd R. Golub, Gavin Ha, Uri Ben‐David

    Publicat 2022
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  5. 5
    Patient-derived xenografts undergo mouse-specific tumor evolution

    Patient-derived xenografts undergo mouse-specific tumor evolution per Uri Ben‐David, Gavin Ha, Yuen‐Yi Tseng, Noah F. Greenwald, Coyin Oh, Juliann Shih, James M. McFarland, Bang Wong, Jesse S. Boehm, Rameen Beroukhim, Todd R. Golub

    Publicat 2017
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  6. 6
    JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

    JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data per Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Samuel Aparício, Sohrab P. Shah

    Publicat 2012
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  7. 7
    Detection of Circulating Tumor DNA in Patients With Leiomyosarcoma With Progressive Disease

    Detection of Circulating Tumor DNA in Patients With Leiomyosarcoma With Progressive Disease per Matthew L. Hemming, Kelly S. Klega, Justin Rhoades, Gavin Ha, Kate E. Acker, Jessica L. Andersen, Edwin Thai, Anwesha Nag, Aaron R. Thorner, Chandrajit P. Raut, Suzanne George, Brian D. Crompton

    Publicat 2019
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  8. 8
    Tumor Growth Inhibition by Olaparib in <i>BRCA2</i> Germline-Mutated Patient-Derived Ovarian Cancer Tissue Xenografts

    Tumor Growth Inhibition by Olaparib in <i>BRCA2</i> Germline-Mutated Patient-Derived Ovarian Cancer Tissue Xenografts per Ursula Kortmann, Jessica N. McAlpine, Hui Xue, Jun Guan, Gavin Ha, Sophie Tully, Sharaz Shafait, Alan Lau, Aaron Cranston, Mark J. O’Connor, David G. Huntsman, Yuzhuo Wang, C. Blake Gilks

    Publicat 2010
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  9. 9
    SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

    SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors per Rodrigo Goya, Mark Sun, Ryan D. Morin, Gillian Leung, Gavin Ha, Kimberley C. Wiegand, Janine Senz, Anamaria Crisan, Marco A. Marra, Martin Hirst, David G. Huntsman, Kevin P. Murphy, Samuel Aparício, Sohrab P. Shah

    Publicat 2010
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  10. 10
    Multiplexed functional genomic analysis of 5’ untranslated region mutations across the spectrum of prostate cancer

    Multiplexed functional genomic analysis of 5’ untranslated region mutations across the spectrum of prostate cancer per Yiting Lim, Sonali Arora, Samantha L. Schuster, Lukas Corey, Matthew Fitzgibbon, Cynthia L. Wladyka, Xiaoying Wu, Ilsa M. Coleman, Jeffrey J. Delrow, Eva Corey, Lawrence D. True, Peter S. Nelson, Gavin Ha, Andrew C. Hsieh

    Publicat 2021
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  11. 11
    Multi-level functional genomics reveals molecular and cellular oncogenicity of patient-based 3′ untranslated region mutations

    Multi-level functional genomics reveals molecular and cellular oncogenicity of patient-based 3′ untranslated region mutations per Samantha L. Schuster, Sonali Arora, Cynthia L. Wladyka, Pushpa Itagi, Lukas Corey, Dave Young, Bethany L. Stackhouse, Lori Kollath, Qian Wu, Eva Corey, Lawrence D. True, Gavin Ha, Patrick J. Paddison, Andrew C. Hsieh

    Publicat 2023
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  12. 12
    Assay Validation of Cell-Free DNA Shallow Whole-Genome Sequencing to Determine Tumor Fraction in Advanced Cancers

    Assay Validation of Cell-Free DNA Shallow Whole-Genome Sequencing to Determine Tumor Fraction in Advanced Cancers per Micah Rickles-Young, Gabriel Tinoco, Junko Tsuji, Sam Pollock, Marcy Haynam, Heather LeFebvre, Kristyn Glover, Dwight H. Owen, Katharine A. Collier, Gavin Ha, Viktor A. Adalsteinsson, Carrie Cibulskis, Niall J. Lennon, Daniel G. Stover

    Publicat 2024
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  13. 13
    Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

    Systematic analysis of somatic mutations impacting gene expression in 12 tumour types per Jiarui Ding, Melissa K. McConechy, Hugo M. Horlings, Gavin Ha, Fong Chun Chan, Tyler Funnell, Sarah C. Mullaly, Jüri Reimand, Ali Bashashati, Gary D. Bader, David G. Huntsman, Samuel Aparício, Anne Condon, Sohrab P. Shah

    Publicat 2015
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  14. 14
    Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

    Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer per Gavin Ha, Andrew Roth, Daniel Lai, Ali Bashashati, Jiarui Ding, Rodrigo Goya, Ryan Giuliany, Jamie Rosner, Arusha Oloumi, Karey Shumansky, Suet‐Feung Chin, Gulisa Turashvili, Martin Hirst, Carlos Caldas, Marco A. Marra, Samuel Aparício, Sohrab P. Shah

    Publicat 2012
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  15. 15
    Detection of Somatic Structural Variants Enables Quantification and Characterization of Circulating Tumor DNA in Children With Solid Tumors

    Detection of Somatic Structural Variants Enables Quantification and Characterization of Circulating Tumor DNA in Children With Solid Tumors per Kelly S. Klega, Alma Imamović, Gavin Ha, Andrea Clapp, Stephanie C. Meyer, Abigail Ward, Catherine Clinton, Anwesha Nag, Eliezer M. Van Allen, Elizabeth A. Mullen, Steven G. DuBois, Katherine A. Janeway, Matthew Meyerson, Aaron R. Thorner, Brian D. Crompton

    Publicat 2018
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  16. 16
    FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA

    FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA per Yaping Liu, Sarah C. Reed, Christopher Lo, Atish D. Choudhury, Heather A. Parsons, Daniel G. Stover, Gavin Ha, Gregory Gydush, Justin Rhoades, Denisse Rotem, Samuel S. Freeman, David Katz, Ravi Bandaru, Haizi Zheng, Hailu Fu, Viktor A. Adalsteinsson, Manolis Kellis

    Publicat 2024
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  17. 17
    deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

    deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data per Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, S. Cenk Şahinalp, David G. Huntsman, Sohrab P. Shah

    Publicat 2011
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  18. 18
    Genetic interrogation of circulating multiple myeloma cells at single-cell resolution

    Genetic interrogation of circulating multiple myeloma cells at single-cell resolution per Jens G. Lohr, Sora Kim, Joshua Gould, Birgit Knoechel, Yotam Drier, Matthew J. Cotton, Daniel H.D. Gray, Nicole Birrer, Bang Wong, Gavin Ha, Cheng-Zhong Zhang, Guangwu Guo, Matthew Meyerson, Andrew J. Yee, Jesse S. Boehm, Noopur Raje, Todd R. Golub

    Publicat 2016
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  19. 19
    Combined TP53 and RB1 Loss Promotes Prostate Cancer Resistance to a Spectrum of Therapeutics and Confers Vulnerability to Replication Stress

    Combined TP53 and RB1 Loss Promotes Prostate Cancer Resistance to a Spectrum of Therapeutics and Confers Vulnerability to Replication Stress per Michael D. Nyquist, Alexandra Corella, Ilsa M. Coleman, Navonil De Sarkar, Arja Kaipainen, Gavin Ha, Roman Gulati, Lisa S. Ang, Payel Chatterjee, Jared M. Lucas, Colin C. Pritchard, Gail P. Risbridger, John T. Isaacs, Bruce Montgomery, Colm Morrissey, Eva Corey, Peter S. Nelson

    Publicat 2020
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  20. 20
    Cancer aneuploidies are shaped primarily by effects on tumour fitness

    Cancer aneuploidies are shaped primarily by effects on tumour fitness per Juliann Shih, Shahab Sarmashghi, Nadja Zhakula-Kostadinova, Shu Zhang, Yohanna Georgis, Stephanie Hoyt, Michael S. Cuoco, Galen F. Gao, Liam F. Spurr, Ashton C. Berger, Gavin Ha, Verónica Rendo, Hui Shen, Matthew Meyerson, Andrew D. Cherniack, Alison M. Taylor, Rameen Beroukhim

    Publicat 2023
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