Search Results - Gabriel Moreno‐Hagelsieb

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  1. 1
    Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

    Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss? by Ward Natalie, Gabriel Moreno‐Hagelsieb

    Published 2014
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  2. 2
    Choosing BLAST options for better detection of orthologs as reciprocal best hits

    Choosing BLAST options for better detection of orthologs as reciprocal best hits by Gabriel Moreno‐Hagelsieb, Kristen Latimer

    Published 2007
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  3. 3
    A powerful non-homology method for the prediction of operons in prokaryotes

    A powerful non-homology method for the prediction of operons in prokaryotes by Gabriel Moreno‐Hagelsieb, Julio Collado‐Vides

    Published 2002
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  4. 4
    Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2

    Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2 by Julie E. Hernández-Salmerón, Gabriel Moreno‐Hagelsieb

    Published 2020
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  5. 5
    A Comparative Genomics Approach to Prediction of New Members of Regulons

    A Comparative Genomics Approach to Prediction of New Members of Regulons by Kai Tan, Gabriel Moreno‐Hagelsieb, Julio Collado‐Vides, Gary D. Stormo

    Published 2001
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  6. 6
    Operons in <i>Escherichia coli</i> : Genomic analyses and predictions

    Operons in <i>Escherichia coli</i> : Genomic analyses and predictions by Heladia Salgado, Gabriel Moreno‐Hagelsieb, Temple F. Smith, Julio Collado‐Vides

    Published 2000
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  7. 7
    An assessment of genome annotation coverage across the bacterial tree of life

    An assessment of genome annotation coverage across the bacterial tree of life by Briallen Lobb, Benjamin J.-M. Tremblay, Gabriel Moreno‐Hagelsieb, Andrew C. Doxey

    Published 2020
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  8. 8
    The Transporter Classification Database (TCDB): recent advances

    The Transporter Classification Database (TCDB): recent advances by Milton H. Saier, Vamsee Reddy, Brian V. Tsu, Muhammad Saad Ahmed, Chun Li, Gabriel Moreno‐Hagelsieb

    Published 2015
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  9. 9
    Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics

    Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics by Luis David Alcaraz, Gabriel Moreno‐Hagelsieb, Luis E. Eguiarte, Valeria Souza, Luís Herrera‐Estrella, Gabriela Olmedo

    Published 2010
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  10. 10
    Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases

    Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases by Arturo Medrano-Soto, Gabriel Moreno‐Hagelsieb, Daniel J. McLaughlin, Zachary S. Ye, Kevin J. Hendargo, Milton H. Saier

    Published 2018
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  11. 11
    AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods

    AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods by Xin Wei, Huagang Tan, Briallen Lobb, William Zhen, Zijing Wu, Donovan H. Parks, Josh D. Neufeld, Gabriel Moreno‐Hagelsieb, Andrew C. Doxey

    Published 2024
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  12. 12
    Probing Teichoic Acid Genetics with Bioactive Molecules Reveals New Interactions among Diverse Processes in Bacterial Cell Wall Biogenesis

    Probing Teichoic Acid Genetics with Bioactive Molecules Reveals New Interactions among Diverse Processes in Bacterial Cell Wall Biogenesis by Michael A. D’Elia, Kathryn Millar, Amit P. Bhavsar, Ana M. Tomljenovic-Berube, Bernd Hutter, Christoph Schaab, Gabriel Moreno‐Hagelsieb, Eric D. Brown

    Published 2009
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  13. 13
    Determinants of Intestinal Permeability in Healthy First-Degree Relatives of Individuals with Crohnʼs Disease

    Determinants of Intestinal Permeability in Healthy First-Degree Relatives of Individuals with Crohnʼs Disease by David Kevans, Williams Turpin, Karen Madsen, Jon Meddings, Konstantin Shestopaloff, Wei Xu, Gabriel Moreno‐Hagelsieb, Anne M. Griffiths, Mark S. Silverberg, Andrew D. Paterson, Kenneth Croitoru

    Published 2015
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  14. 14
    Bacterial biogeography of the human digestive tract

    Bacterial biogeography of the human digestive tract by Jennifer C. Stearns, Michael D. J. Lynch, Dilani B. Senadheera, Howard C. Tenenbaum, Michael B. Goldberg, Dennis G. Cvitkovitch, Kenneth Croitoru, Gabriel Moreno‐Hagelsieb, Josh D. Neufeld

    Published 2011
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  15. 15
    The Transporter Classification Database (TCDB): 2021 update

    The Transporter Classification Database (TCDB): 2021 update by Milton H. Saier, Vamsee Reddy, Gabriel Moreno‐Hagelsieb, Kevin J. Hendargo, Yichi Zhang, Vasu Iddamsetty, Katie Jing Kay Lam, Nuo Tian, Steven Russum, Jia‐Ning Wang, Arturo Medrano-Soto

    Published 2020
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  16. 16
    Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways

    Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways by Mohan Babu, J. Javier Díaz-Mejía, James Vlasblom, Alla Gagarinova, Sadhna Phanse, Chris Graham, Fouad Yousif, Huiming Ding, Xuejian Xiong, Anaies Nazarians-Armavil, Md Alamgir, ARM Mehrab Ali, Oxana Pogoutse, Asaf Peer, Roland Arnold, Magali Michaut, John Parkinson, Ashkan Golshani, Chris Whitfield, Shoshana J. Wodak, Gabriel Moreno‐Hagelsieb, Jack Greenblatt, Andrew Emili

    Published 2011
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  17. 17
    Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

    Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins by Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, ARM Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack Greenblatt, Gabriel Moreno‐Hagelsieb, Andrew Emili

    Published 2009
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  18. 18
    Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli

    Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli by Mohan Babu, Roland Arnold, Cedoljub Bundalovic-Torma, Alla Gagarinova, Keith S. Wong, Ashwani Kumar, Geordie Stewart, Bahram Samanfar, Hiroyuki Aoki, Omar Wagih, James Vlasblom, Sadhna Phanse, Krunal Lad, Angela Yeou Hsiung Yu, Christopher I. Graham, Ke Jin, Eric D. Brown, Ashkan Golshani, Philip Kim, Gabriel Moreno‐Hagelsieb, Jack Greenblatt, Walid A. Houry, John Parkinson, Andrew Emili

    Published 2014
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  19. 19
    RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12

    RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12 by Víctor H. Tierrafría, Claire Rioualen, Heladia Salgado, Paloma Lara, Socorro Gama‐Castro, Patrick Lally, Laura Gómez-Romero, Pablo Peña-Loredo, Andrés G. López-Almazo, Gabriel Alarcón-Carranza, Felipe Betancourt-Figueroa, Shirley Alquicira-Hernández, J. Enrique Polanco-Morelos, Jair Santiago García-Sotelo, Estefani Gaytan-Nuñez, Carlos-Francisco Méndez-Cruz, Luis J. Muñiz, César Bonavides-Martínez, Gabriel Moreno‐Hagelsieb, James E. Galagan, Joseph T. Wade, Julio Collado‐Vides

    Published 2022
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  20. 20
    Ligand interaction landscape of transcription factors and essential enzymes in E. coli

    Ligand interaction landscape of transcription factors and essential enzymes in E. coli by Hui Peng, Sergei Kotelnikov, Megan Egbert, Shany Ofaim, Grant C. Stevens, Sadhna Phanse, Tatiana D. Saccon, Mikhail Ignatov, S. Dutta, Zoe Istace, Mohamed Taha Moutaoufik, Hiroyuki Aoki, Neal Kewalramani, Jianxian Sun, Yufeng Gong, Dzmitry Padhorny, Gennady Poda, Andrey Alekseenko, Kathryn A. Porter, George Jones, Irina A. Rodionova, Hongbo Guo, Oxana Pogoutse, Suprama Datta, Milton H. Saier, Mark Crovella, Sándor Vajda, Gabriel Moreno‐Hagelsieb, John Parkinson, Daniel Segrè, Mohan Babu, Dima Kozakov, Andrew Emili

    Published 2025
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