Výsledky vyhledávání - Francesco Beghini

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  1. 1
    Large-scale comparative metagenomics of <i>Blastocystis</i>, a common member of the human gut microbiome

    Large-scale comparative metagenomics of <i>Blastocystis</i>, a common member of the human gut microbiome Autor Francesco Beghini, Edoardo Pasolli, Tin Duy Truong, Lorenza Putignani, Simone M. Cacciò, Nicola Segata

    Vydáno 2017
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  2. 2
    Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

    Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species Autor Serena Manara, Francesco Asnicar, Francesco Beghini, Davide Bazzani, Fabio Cumbo, Moreno Zolfo, Eleonora Nigro, Nicolai Karcher, Paolo Manghi, Marisa Metzger, Edoardo Pasolli, Nicola Segata

    Vydáno 2019
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  3. 3
    Gut microbiome strain-sharing within isolated village social networks

    Gut microbiome strain-sharing within isolated village social networks Autor Francesco Beghini, Jackson Pullman, Marcus Alexander, Shivkumar Vishnempet Shridhar, Drew Prinster, Adarsh Singh, Rigoberto Matute Juárez, Edoardo M. Airoldi, Ilana Brito, Nicholas A. Christakis

    Vydáno 2024
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  4. 4
    Sociodemographic variation in the oral microbiome

    Sociodemographic variation in the oral microbiome Autor Audrey Renson, Heidi E. Jones, Francesco Beghini, Nicola Segata, Christine P. Zolnik, Mykhaylo Usyk, Thomas Moody, Lorna E. Thorpe, Robert D. Burk, Levi Waldron, Jennifer B. Dowd

    Vydáno 2019
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  5. 5
    Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

    Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis Autor Adrian Tett, Edoardo Pasolli, Stefania Farina, Duy Tin Truong, Francesco Asnicar, Moreno Zolfo, Francesco Beghini, Federica Armanini, Olivier Jousson, Veronica De Sanctis, Roberto Bertorelli, Giampiero Girolomoni, Mario Cristofolini, Nicola Segata

    Vydáno 2017
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  6. 6
    Accessible, curated metagenomic data through ExperimentHub

    Accessible, curated metagenomic data through ExperimentHub Autor Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong, Francesco Beghini, Faizan Malik, Marcel Ramos, Jennifer B. Dowd, Curtis Huttenhower, Martin Morgan, Nicola Segata, Levi Waldron

    Vydáno 2017
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  7. 7
    Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

    Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 Autor Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G. Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, Nicola Segata

    Vydáno 2020
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  8. 8
    Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

    Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 Autor Francesco Beghini, Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Andrew Maltez Thomas, Paolo Manghi, Mireia Vallés-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A. Franzosa, Nicola Segata

    Vydáno 2020
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  9. 9
    Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

    Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle Autor Edoardo Pasolli, Francesco Asnicar, Serena Manara, Moreno Zolfo, Nicolai Karcher, Federica Armanini, Francesco Beghini, Paolo Manghi, Adrian Tett, Paolo Ghensi, María Carmen Collado, Benjamin L. Rice, Casey DuLong, Xochitl C. Morgan, Christopher D. Golden, Christopher Quince, Curtis Huttenhower, Nicola Segata

    Vydáno 2019
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  10. 10
    Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

    Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 Autor Francesco Beghini, Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Paolo Manghi, Matthias Scholz, Andrew Maltez Thomas, Mireia Vallés-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A. Franzosa, Nicola Segata

    Vydáno 2021
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  11. 11
    Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases

    Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases Autor Gianluca Ianiro, Michal Punčochář, Nicolai Karcher, Serena Porcari, Federica Armanini, Francesco Asnicar, Francesco Beghini, Aitor Blanco‐Míguez, Fabio Cumbo, Paolo Manghi, Federica Pinto, Luca Masucci, Gianluca Quaranta, Silvia De Giorgi, Giusi Desirè Sciumè, Stefano Bibbò, Federica Del Chierico, Lorenza Putignani, Maurizio Sanguinetti, Antonio Gasbarrini, Mireia Vallés-Colomer, Giovanni Cammarota, Nicola Segata

    Vydáno 2022
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  12. 12
    MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

    MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice Autor Paolo Manghi, Aitor Blanco‐Míguez, Serena Manara, Amir Nabinejad, Fabio Cumbo, Francesco Beghini, Federica Armanini, Davide Golzato, Kun D. Huang, Andrew Maltez Thomas, Gianmarco Piccinno, Michal Punčochář, Moreno Zolfo, Till Robin Lesker, Marius Bredon, Julien Planchais, Jérémy Glodt, Mireia Vallés-Colomer, Omry Koren, Edoardo Pasolli, Francesco Asnicar, Till Strowig, Harry Sokol, Nicola Segata

    Vydáno 2023
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  13. 13
    Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

    Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 Autor Aitor Blanco‐Míguez, Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo, Paolo Manghi, Léonard Dubois, Kun D. Huang, Andrew Maltez Thomas, William A. Nickols, Gianmarco Piccinno, Elisa Piperni, Michal Punčochář, Mireia Vallés-Colomer, Adrian Tett, Francesca Giordano, Richard Davies, Jonathan Wolf, Sarah Berry, Tim D. Spector, Eric A. Franzosa, Edoardo Pasolli, Francesco Asnicar, Curtis Huttenhower, Nicola Segata

    Vydáno 2023
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  14. 14
    Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

    Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation Autor Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, A. Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Jakob Wirbel, Petra Schrotz‐King, Cornelia M. Ulrich, Hermann Brenner, Manimozhiyan Arumugam, Peer Bork, Georg Zeller, Francesca Cordero, Emmanuel Dias‐Neto, João Carlos Setúbal, Adrian Tett, Barbara Pardini, María Rescigno, Levi Waldron, Alessio Naccarati, Nicola Segata

    Vydáno 2019
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  15. 15
    Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

    Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation Autor Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, A. Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Jakob Wirbel, Petra Schrotz‐King, Cornelia M. Ulrich, Hermann Brenner, Manimozhiyan Arumugam, Peer Bork, Georg Zeller, Francesca Cordero, Emmanuel Dias‐Neto, João Carlos Setúbal, Adrian Tett, Barbara Pardini, María Rescigno, Levi Waldron, Alessio Naccarati, Nicola Segata

    Vydáno 2019
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  16. 16
    Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

    Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome Autor Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Daniela Savoi, Sabrina Duranti, Gabriele Andrea Lugli, Leonardo Mancabelli, Francesca Turroni, Chiara Ferrario, Christian Milani, Marta Mangifesta, Rosaria Anzalone, Alice Viappiani, Moran Yassour, Hera Vlamakis, Ramnik J. Xavier, María Carmen Collado, Omry Koren, Saverio Tateo, Massimo Soffiati, Anna Pedrotti, Marco Ventura, Curtis Huttenhower, Peer Bork, Nicola Segata

    Vydáno 2018
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  17. 17
    Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

    Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals Autor Francesco Asnicar, Sarah Berry, Ana M. Valdes, Long H. Nguyen, Gianmarco Piccinno, David A. Drew, Emily R. Leeming, Rachel Gibson, Caroline Le Roy, Haya Al Khatib, Lucy Francis, Mohsen Mazidi, Olatz Mompeó, Mireia Vallés-Colomer, Adrian Tett, Francesco Beghini, Léonard Dubois, Davide Bazzani, Andrew Maltez Thomas, Chloe Mirzayi, Asya Khleborodova, Sehyun Oh, Rachel Hine, Christopher Bonnett, Joan Capdevila Pujol, Serge Danzanvilliers, Francesca Giordano, Ludwig Geistlinger, Levi Waldron, Richard Davies, George Hadjigeorgiou, Jonathan Wolf, José M. Ordovás, Christopher D. Gardner, Paul W. Franks, Andrew T. Chan, Curtis Huttenhower, Tim D. Spector, Nicola Segata

    Vydáno 2021
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  18. 18
    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Critical Assessment of Metagenome Interpretation: the second round of challenges Autor Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline Brito, C. Titus Brown, Jan P. Buchmann, Aydın Buluç, Bo Chen, Rayan Chikhi, Philip T. L. C. Clausen, Alexandru Cristian, Piotr Wojciech Dąbrowski, Aaron E. Darling, Rob Egan, Eleazar Eskin, Evangelos Georganas, Eugene Goltsman, Melissa A. Gray, Lars Hestbjerg Hansen, Steven Hofmeyr, Pingqin Huang, Luiz Irber, Huijue Jia, Tue Sparholt Jørgensen, Silas Kieser, Terje Klemetsen, Axel Kola, Mikhail Kolmogorov, Anton Korobeynikov, Jason C. Kwan, Nathan LaPierre, Claire Lemaitre, Chenhao Li, Antoine Limasset, Fábio Malcher Miranda, Serghei Mangul, Vanessa R. Marcelino, Camille Marchet, Pierre Marijon, Dmitry Meleshko, Daniel R. Mende, Alessio Milanese, Niranjan Nagarajan, Jakob Nybo Nissen, Sergey Nurk, Leonid Oliker, Lucas Paoli, Pierre Peterlongo, Vitor C. Piro, Jacob S. Porter, Simon Rasmussen, Evan Rees, Knut Reinert, Bernhard Y. Renard, Espen Mikal Robertsen, Gail Rosen, Hans‐Joachim Ruscheweyh, Varuni Sarwal, Nicola Segata, Enrico Seiler, Lizhen Shi, Fengzhu Sun, Shinichi Sunagawa, Søren J. Sørensen, Ashleigh Thomas, Chengxuan Tong, Mirko Trajkovski, Julien Tremblay, Gherman Uritskiy, Riccardo Vicedomini, Zhengyang Wang, Ziye Wang, Zhong Wang, Andrew Warren, Nils Peder Willassen, Katherine Yelick, Ronghui You, Georg Zeller, Zhengqiao Zhao, Shanfeng Zhu, Jie Zhu, Rubén Garrido‐Oter, Petra Gastmeier, Stéphane Hacquard, Susanne Häußler, Ariane Khaledi, Friederike Maechler, Fantin Mesny, Simona Radutoiu, Paul Schulze‐Lefert, Nathiana Smit, Till Strowig

    Vydáno 2022
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  19. 19
    Reporting guidelines for human microbiome research: the STORMS checklist

    Reporting guidelines for human microbiome research: the STORMS checklist Autor Chloe Mirzayi, Audrey Renson, Cesare Furlanello, Susanna‐Assunta Sansone, Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J. Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z. Marques, David A. MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami S. Bhatt, Jordan E. Bisanz, Jonathan Braun, Héctor Corrada Bravo, Gregory A. Buck, Frederic D. Bushman, David Casero, Gerard Clarke, María Carmen Collado, Paul D. Cotter, John F. Cryan, Ryan T. Demmer, Suzanne Devkota, Eran Elinav, Juan S. Escobar, Jennifer M. Fettweis, ROBERT FINN, Anthony A. Fodor, Sofia K. Forslund, André Franke, Cesare Furlanello, Jack Gilbert, Elizabeth A. Grice, Benjamin Haibe‐Kains, Scott A. Handley, Pamela Herd, Susan Holmes, Jonathan P. Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S. Kwon, Morgan G. I. Langille, Brianna Lindsay, Dermot McGovern, Alice C. McHardy, Shannon K. McWeeney, Noel T. Mueller, Luigi Nezi, Matthew R. Olm, Noah W. Palm, Edoardo Pasolli, Jeroen Raes, Matthew R. Redinbo, Malte Rühlemann, R. Balfour Sartor, Patrick D. Schloss, Lynn M. Schriml, Eran Segal, Michelle Shardell, Thomas J. Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L. Sonnenburg, Sujatha Srinivasan, Louise B. Thingholm, Peter J. Turnbaugh, Vaibhav Upadhyay, Ramona Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedín C. Culhane, Viswanath Devanarayan, Joaquı́n Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E. Mason, Tim R. Mercer, Susanna‐Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Chris Hunter

    Vydáno 2021
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