Search Results - Fonseca, Vagner

A34 Automated profiling of the human virome from raw metagenomic data by Moosa, Yumna, Vilsker, Michael, Vanden Eyden, Ewout, Fonseca, Vagner, Nooij, Sam, Deforche, Koen, de Oliveira, Tulio

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Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes by Cleemput, Sara, Dumon, Wim, Fonseca, Vagner, Abdool Karim, Wasim, Giovanetti, Marta, Alcantara, Luiz Carlos, Deforche, Koen, de Oliveira, Tulio

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Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes by Cleemput, Sara, Dumon, Wim, Fonseca, Vagner, Karim, Wasim Abdool, Giovanetti, Marta, Alcantara, Luiz Carlos, Deforche, Koen, de Oliveira, Tulio

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Current Affairs of Microbial Genome-Wide Association Studies: Approaches, Bottlenecks and Analytical Pitfalls by San, James Emmanuel, Baichoo, Shakuntala, Kanzi, Aquillah, Moosa, Yumna, Lessells, Richard, Fonseca, Vagner, Mogaka, John, Power, Robert, de Oliveira, Tulio

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Human Retrovirus Codon Usage from tRNA Point of View: Therapeutic Insights by Frias, Diego, Monteiro-Cunha, Joana P., Mota-Miranda, Aline C., Fonseca, Vagner S., de Oliveira, Tulio, Galvao-Castro, Bernardo, Alcantara, Luiz C. J.

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Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment by Juma, John, Fonseca, Vagner, Konongoi, Samson L., van Heusden, Peter, Roesel, Kristina, Sang, Rosemary, Bett, Bernard, Christoffels, Alan, de Oliveira, Tulio, Oyola, Samuel O.

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Genome Detective: an automated system for virus identification from high-throughput sequencing data by Vilsker, Michael, Moosa, Yumna, Nooij, Sam, Fonseca, Vagner, Ghysens, Yoika, Dumon, Korneel, Pauwels, Raf, Alcantara, Luiz Carlos, Vanden Eynden, Ewout, Vandamme, Anne-Mieke, Deforche, Koen, de Oliveira, Tulio

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Detection of a SARS-CoV-2 P.1.1 variant lacking N501Y in a vaccinated health care worker in Italy by Angeletti, Silvia, Giovanetti, Marta, Fogolari, Marta, De Florio, Lucia, Francesconi, Maria, Veralli, Roberta, Antonelli, Francesca, Donati, Daniele, Miccoli, Ginevra Azzurra, Fonseca, Vagner, Benedetti, Francesca, Zella, Davide, Riva, Elisabetta, Ciccozzi, Massimo

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High Resolution analysis of Transmission Dynamics of Sars-Cov-2 in Two Major Hospital Outbreaks in South Africa Leveraging Intrahost Diversity by James, San Emmanuel, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio

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Betacoronaviruses genome analysis reveals evolution toward specific codons usage: Implications for SARS‐CoV‐2 mitigation strategies by Lopes, Elisson N., Fonseca, Vagner, Frias, Diego, Tosta, Stephane, Salgado, Álvaro, Assunção Vialle, Ricardo, Paulo Eduardo, Toscano S., Barreto, Fernanda K., Ariston de Azevedo, Vasco, Guarino, Michele, Angeletti, Silvia, Ciccozzi, Massimo, Junior Alcantara, Luiz C., Giovanetti, Marta

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Genomic surveillance activities unveil the introduction of the SARS‐CoV‐2 B.1.525 variant of interest in Brazil: Case report by Pereira, Felicidade, Tosta, Stephane, Lima, Maricélia M., Reboredo de Oliveira da Silva, Luciana, Nardy, Vanessa B., Gómez, Marcela K. A., Lima, Jaqueline G., Fonseca, Vagner, de Oliveira, Tulio, Lourenço, Jose, Alcantara, Luiz C., Giovanetti, Marta, Leal, Arabela

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Technology transfer during the COVID-19 pandemic: report on the first face-to-face practical training course in Brazil by Barreto, Fernanda Khouri, Santos, Luciane Amorim, Giovanetti, Marta, Fonseca, Vagner, Aburjaile, Flavia, Silva, Joscelio Aguiar, Freitas, Carla, Peterka, Cassio Roberto Leonel, Rico, Jairo Mendez, Almiron, Maria, Melo, Carlos Frederico Campelo de Albuquerque e, Alcântara, Luiz Carlos Júnior

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Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic by Pillay, Sureshnee, Giandhari, Jennifer, Tegally, Houriiyah, Wilkinson, Eduan, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Mattison, Stacey, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, San, James Emmanuel, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Luiz Carlos, de Oliveira, Tulio

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Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report by Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenco, Jose, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Luiz Carols, Petruccione, Francesco, de Oliveira, Tulio

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Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report by Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenço, José, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Sedwell Khanyile, Khulekani, Fonseca, Vagner, Giovanetti, Marta, Carlos Junior Alcantara, Luiz, Petruccione, Francesco, de Oliveira, Tulio

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Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa by San, James E, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Nelson, Chase W, Smidt, Werner, Kiran, Anmol M, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Martin, Darren P, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio

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SARS-CoV-2 epidemic in Brazil: how the displacement of variants has driven distinct epidemic waves by Alcantara, Luiz Carlos Junior, Nogueira, Elisson, Shuab, Gabriel, Tosta, Stephane, Fristch, Hegger, Pimentel, Victor, Souza-Neto, Jayme A., Coutinho, Luiz Lehmann, Fukumasu, Heidge, Sampaio, Sandra Coccuzzo, Elias, Maria Carolina, Kashima, Simone, Slavov, Svetoslav Nanev, Ciccozzi, Massimo, Cella, Eleonora, Lourenco, José, Fonseca, Vagner, Giovanetti, Marta

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Co-Circulation of Two Independent Clades and Persistence of CHIKV-ECSA Genotype during Epidemic Waves in Rio de Janeiro, Southeast Brazil by Fabri, Allison Araújo, Rodrigues, Cintia Damasceno dos Santos, dos Santos, Carolina Cardoso, Chalhoub, Flávia Löwen Levy, Sampaio, Simone Alves, Faria, Nieli Rodrigues da Costa, Torres, Maria Celeste, Fonseca, Vagner, Brasil, Patricia, Calvet, Guilherme, Alcantara, Luiz Carlos Junior, de Filippis, Ana Maria Bispo, Giovanetti, Marta, de Bruycker-Nogueira, Fernanda

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Dengue Virus Serotype 2 Intrahost Diversity in Patients with Different Clinical Outcomes by Torres, Maria Celeste, Lima de Mendonça, Marcos Cesar, Damasceno dos Santos Rodrigues, Cintia, Fonseca, Vagner, Ribeiro, Mario Sergio, Brandão, Ana Paula, Venâncio da Cunha, Rivaldo, Dias, Ana Isabel, Santos Vilas Boas, Lucy, Felix, Alvina Clara, Alves Pereira, Maira, de Oliveira Pinto, Luzia Maria, Sakuntabhai, Anavaj, Bispo de Filippis, Ana Maria

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Molecular surveillance of the on-going SARS-COV-2 epidemic in Ribeirao Preto City, Brazil by Slavov, Svetoslav Nanev, Giovanetti, Marta, dos Santos Bezerra, Rafael, Fonseca, Vagner, Santos, Elaine Vieira, Rodrigues, Evandra Strazza, Adelino, Talita, Xavier, Joilson, Borges, Josiane Serrano, Evaristo, Mariane, Lima, Mauricio Teixeira, de Carvalho Pereira, Glauco, Yamamoto, Aparecida Yulie, Clé, Diego Villa, Calado, Rodrigo Tocantins, Covas, Dimas Tadeu, Alcantara, Luiz Carlos Junior, Kashima, Simone

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