檢索結果 - Fangming Xie

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  1. 1
    Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes

    Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes 由 Ethan J. Armand, Junhao Li, Fangming Xie, Chongyuan Luo, Eran A. Mukamel

    出版 2021
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  2. 2
    Spatial profiling of the interplay between cell type- and vision-dependent transcriptomic programs in the visual cortex

    Spatial profiling of the interplay between cell type- and vision-dependent transcriptomic programs in the visual cortex 由 Fangming Xie, Saumya Jain, Runzhe Xu, Salwan Butrus, Zhiqun Tan, Xiangmin Xu, Karthik Shekhar, S Lawrence Zipursky

    出版 2025
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  3. 3
    SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

    SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq 由 Rongxin Fang, Sebastian Preißl, Yang Li, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K. Shiau, Xinzhu Zhou, Fangming Xie, Eran A. Mukamel, Kai Zhang, Yanxiao Zhang, M. Margarita Behrens, Joseph R. Ecker, Bing Ren

    出版 2019
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  4. 4
    Comprehensive analysis of single cell ATAC-seq data with SnapATAC

    Comprehensive analysis of single cell ATAC-seq data with SnapATAC 由 Rongxin Fang, Sebastian Preißl, Yang Li, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K. Shiau, Xinzhu Zhou, Fangming Xie, Eran A. Mukamel, Kai Zhang, Yanxiao Zhang, M. Margarita Behrens, Joseph R. Ecker, Bing Ren

    出版 2021
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  5. 5
    Temporally distinct 3D multi-omic dynamics in the developing human brain

    Temporally distinct 3D multi-omic dynamics in the developing human brain 由 Matthew G. Heffel, Jingtian Zhou, Yi Zhang, Dong-Sung Lee, Kangcheng Hou, Oier Pastor-Alonso, Kevin Abuhanna, Joseph Galasso, Colin Kern, Chu‐Yi Tai, Carlos García‐Padilla, Mahsa Nafisi, Yi Zhou, Anthony D. Schmitt, Terence Li, Maximilian Haeussler, Brittney Wick, Martin Jinye Zhang, Fangming Xie, Ryan Ziffra, Eran A. Mukamel, Eleazar Eskin, Tomasz J. Nowakowski, Jesse R. Dixon, Bogdan Paşaniuc, Joseph R. Ecker, Quan Zhu, Bogdan Bintu, Mercedes F. Paredes, Chongyuan Luo

    出版 2024
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  6. 6
    Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

    Single nucleus multi-omics identifies human cortical cell regulatory genome diversity 由 Chongyuan Luo, Hanqing Liu, Fangming Xie, Ethan J. Armand, Kimberly Siletti, Trygve E. Bakken, Rongxin Fang, Wayne I. Doyle, Tim Stuart, Rebecca D. Hodge, Lijuan Hu, Bang-An Wang, Zhuzhu Zhang, Sebastian Preißl, Dong-Sung Lee, Jingtian Zhou, Sheng-Yong Niu, Rosa Castanon, Anna Bartlett, Angeline Rivkin, Xinxin Wang, Jacinta Lucero, Joseph R. Nery, David A. Davis, Deborah C. Mash, Rahul Satija, Jesse R. Dixon, Sten Linnarsson, Ed S. Lein, M. Margarita Behrens, Bing Ren, Eran A. Mukamel, Joseph R. Ecker

    出版 2022
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  7. 7
    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types 由 Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S. Adkins, Andrew Aldridge, Seth A. Ament, António Pinto‐Duarte, Anna Bartlett, M. Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Tommaso Biancalani, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Heather H. Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L. Dougherty, Wayne I. Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle Giglio, Jeff Goldy, Mike Hawrylycz, Hector Roux de Bézieux, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jonathan Crabtree, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem Nadaf, Joseph R. Nery, Sheng-Yong Niu, Joshua Orvis, Julia Osteen, Thanh Pham, Olivier Poirion, Sebastian Preißl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline Rivkin, Kimberly A. Smith, Kelly Street, Josef Šulc, Thuc Nghi Nguyen, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Valentine Svensson, Charles Vanderburg, Vasilis Ntranos, Cindy T. J. van Velthoven, Xinxin Wang, Owen White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel

    出版 2020
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  8. 8
    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex 由 Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew Aldridge, Seth A. Ament, Anna Bartlett, M. Margarita Behrens, Koen Van Den Berge, Darren Bertagnolli, Hector Roux de Bézieux, Tommaso Biancalani, A. Sina Booeshaghi, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Jonathan Crabtree, Heather H. Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L. Dougherty, Wayne I. Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle Giglio, Jeff Goldy, Mike Hawrylycz, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem Nadaf, Joseph R. Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia Osteen, Thanh Pham, António Pinto‐Duarte, Olivier Poirion, Sebastian Preißl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline Rivkin, Kimberly A. Smith, Kelly Street, Josef Šulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles Vanderburg, Cindy T. J. van Velthoven, Xinxin Wang, Owen White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel

    出版 2021
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  9. 9
    Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

    Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse 由 Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian Kalmbach, Megan Crow, Rebecca D. Hodge, Fenna M. Krienen, Staci A. Sorensen, Jeroen Eggermont, Zizhen Yao, Brian D. Aevermann, Andrew Aldridge, Anna Bartlett, Darren Bertagnolli, Tamara Casper, Rosa Castanon, Kirsten Crichton, Tanya L. Daigle, Rachel Dalley, Nick Dee, Nikolai Dembrow, Dinh Diep, Song‐Lin Ding, Weixiu Dong, Rongxin Fang, Stephan Fischer, Melissa Goldman, Jeff Goldy, Lucas T. Graybuck, Brian R. Herb, Xiaomeng Hou, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Baldur van Lew, Yang Eric Li, Christine S. Liu, Hanqing Liu, Jacinta Lucero, Anup Mahurkar, Delissa McMillen, Jeremy A. Miller, Marmar R. Moussa, Joseph R. Nery, Philip R. Nicovich, Joshua Orvis, Julia Osteen, Scott F. Owen, Carter R. Palmer, Thanh Pham, Nongluk Plongthongkum, Olivier Poirion, Nora Reed, Christine Rimorin, Angeline Rivkin, William J. Romanow, Adriana E. Sedeño-Cortés, Kimberly Siletti, Saroja Somasundaram, Josef Šulc, Michael Tieu, Amy Torkelson, Herman Tung, Xinxin Wang, Fangming Xie, Anna Marie Yanny, Yun Zhang, Seth A. Ament, M. Margarita Behrens, Héctor Corrada Bravo, Jerold Chun, Alexander Dobin, Jesse Gillis, Ronna Hertzano, Patrick R. Hof, Thomas Höllt, Gregory D. Horwitz, C. Dirk Keene, Peter V. Kharchenko, Andrew L. Ko, Boudewijn P. F. Lelieveldt, Chongyuan Luo, Eran A. Mukamel, Sebastian Preißl, Aviv Regev, Bing Ren, Richard H. Scheuermann, Kimberly A. Smith, William J. Spain, Owen White, Christof Koch, Michael Hawrylycz, Bosiljka Tasic, Evan Z. Macosko, Steven A. McCarroll, Jonathan T. Ting, Hongkui Zeng, Kun Zhang

    出版 2020
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  10. 10
    Comparative cellular analysis of motor cortex in human, marmoset and mouse

    Comparative cellular analysis of motor cortex in human, marmoset and mouse 由 Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian Kalmbach, Megan Crow, Rebecca D. Hodge, Fenna M. Krienen, Staci A. Sorensen, Jeroen Eggermont, Zizhen Yao, Brian D. Aevermann, Andrew Aldridge, Anna Bartlett, Darren Bertagnolli, Tamara Casper, Rosa Castanon, Kirsten Crichton, Tanya L. Daigle, Rachel Dalley, Nick Dee, Nikolai Dembrow, Dinh Diep, Song‐Lin Ding, Weixiu Dong, Rongxin Fang, Stephan Fischer, Melissa Goldman, Jeff Goldy, Lucas T. Graybuck, Brian R. Herb, Xiaomeng Hou, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Baldur van Lew, Yang Eric Li, Christine S. Liu, Hanqing Liu, Jacinta Lucero, Anup Mahurkar, Delissa McMillen, Jeremy A. Miller, Marmar R. Moussa, Joseph R. Nery, Philip R. Nicovich, Sheng-Yong Niu, Joshua Orvis, Julia Osteen, Scott F. Owen, Carter R. Palmer, Thanh Pham, Nongluk Plongthongkum, Olivier Poirion, Nora Reed, Christine Rimorin, Angeline Rivkin, William J. Romanow, Adriana E. Sedeño-Cortés, Kimberly Siletti, Saroja Somasundaram, Josef Šulc, Michael Tieu, Amy Torkelson, Herman Tung, Xinxin Wang, Fangming Xie, Anna Marie Yanny, Yun Zhang, Seth A. Ament, M. Margarita Behrens, Héctor Corrada Bravo, Jerold Chun, Alexander Dobin, Jesse Gillis, Ronna Hertzano, Patrick R. Hof, Thomas Höllt, Gregory D. Horwitz, C. Dirk Keene, Peter V. Kharchenko, Andrew L. Ko, Boudewijn P. F. Lelieveldt, Chongyuan Luo, Eran A. Mukamel, António Pinto‐Duarte, Sebastian Preißl, Aviv Regev, Bing Ren, Richard H. Scheuermann, Kimberly A. Smith, William J. Spain, Owen White, Christof Koch, Michael Hawrylycz, Bosiljka Tasic, Evan Z. Macosko, Steven A. McCarroll, Jonathan T. Ting

    出版 2021
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  11. 11
    A multimodal cell census and atlas of the mammalian primary motor cortex

    A multimodal cell census and atlas of the mammalian primary motor cortex 由 Edward M. Callaway, Hong‐Wei Dong, Joseph R. Ecker, Michael Hawrylycz, Z. Josh Huang, Ed S. Lein, John Ngai, Pavel Osten, Bing Ren, Andreas S. Tolias, Owen White, Hongkui Zeng, Xiaowei Zhuang, Giorgio A. Ascoli, M. Margarita Behrens, Jerold Chun, Guoping Feng, James C. Gee, Satrajit Ghosh, Yaroslav O. Halchenko, Ronna Hertzano, Byung Kook Lim, Maryann E. Martone, Lydia Ng, Lior Pachter, Alexander J. Ropelewski, Timothy L. Tickle, X. William Yang, Kun Zhang, Trygve E. Bakken, Philipp Berens, Tanya L. Daigle, Julie A. Harris, Nikolas L. Jorstad, Brian Kalmbach, Dmitry Kobak, Yang Eric Li, Hanqing Liu, Katherine S. Matho, Eran A. Mukamel, Maitham Naeemi, Federico Scala, Pengcheng Tan, Jonathan T. Ting, Fangming Xie, Meng Zhang, Zhuzhu Zhang, Jingtian Zhou, Brian Zingg, Ethan J. Armand, Zizhen Yao, Darren Bertagnolli, Tamara Casper, Kirsten Crichton, Nick Dee, Dinh Diep, Song‐Lin Ding, Weixiu Dong, Elizabeth L. Dougherty, Olivia Fong, Melissa Goldman, Jeff Goldy, Rebecca D. Hodge, Lijuan Hu, C. Dirk Keene, Fenna M. Krienen, Matthew Kroll, Blue B. Lake, Kanan Lathia, Sten Linnarsson, Christine S. Liu, Evan Z. Macosko, Steven A. McCarroll, Delissa McMillen, Naeem Nadaf, Thuc Nghi Nguyen, Carter R. Palmer, Thanh Pham, Nongluk Plongthongkum, Nora Reed, Aviv Regev, Christine Rimorin, William J. Romanow, Stephen Savoia, Kimberly Siletti, Kimberly A. Smith, Josef Šulc, Bosiljka Tasic, Michael Tieu, Amy Torkelson, Herman Tung, Cindy T. J. van Velthoven, Charles Vanderburg, Anna Marie Yanny, Rongxin Fang, Xiaomeng Hou, Jacinta Lucero, Julia Osteen, António Pinto‐Duarte, Olivier Poirion

    出版 2021
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  12. 12
    A guide to the BRAIN Initiative Cell Census Network data ecosystem

    A guide to the BRAIN Initiative Cell Census Network data ecosystem 由 Michael Hawrylycz, Maryann E. Martone, Giorgio A. Ascoli, Jan G. Bjaalie, Hong‐Wei Dong, Satrajit Ghosh, Jesse Gillis, Ronna Hertzano, David R. Haynor, Patrick R. Hof, Yongsoo Kim, Ed S. Lein, Yufeng Liu, Jeremy A. Miller, Partha P. Mitra, Eran A. Mukamel, Lydia Ng, David Osumi-Sutherland, Hanchuan Peng, Patrick L. Ray, Raymond E. A. Sánchez, Aviv Regev, Alex Ropelewski, Richard H. Scheuermann, Shawn Zheng Kai Tan, Carol L. Thompson, Timothy L. Tickle, Hagen Tilgner, Merina Varghese, Brock A. Wester, Owen White, Hongkui Zeng, Brian D. Aevermann, David Allemang, Seth A. Ament, Thomas L. Athey, C L Baker, Katherine Baker, Pamela Baker, Anita Bandrowski, Samik Banerjee, Prajal Bishwakarma, Ambrose Carr, Min Chen, Roni Choudhury, Jonah Cool, Heather H. Creasy, Florence D. D’Orazi, Kylee Degatano, Ben Dichter, Song‐Lin Ding, Tim Dolbeare, Joseph R. Ecker, Rongxin Fang, Jean‐Christophe Fillion‐Robin, Timothy P. Fliss, James C. Gee, Tom Gillespie, Nathan W. Gouwens, Guo‐Qiang Zhang, Yaroslav O. Halchenko, Nomi L. Harris, Brian R. Herb, Houri Hintiryan, Gregory Hood, S. Horvath, Bing‐Xing Huo, Dorota Jarecka, Shengdian Jiang, Farzaneh Khajouei, Elizabeth Kiernan, Hüseyin Kır, Lauren Kruse, Changkyu Lee, Boudewijn P. F. Lelieveldt, Yang Eric Li, Hanqing Liu, Lijuan Liu, Anup Markuhar, James C. Mathews, Kaylee L. Mathews, Christopher Mezias, Michael I. Miller, Tyler Mollenkopf, Shoaib Mufti, Chris Mungall, Joshua Orvis, Maja Puchades, Lei Qu, Joseph P. Receveur, Bing Ren, Nathan Sjoquist, Brian Staats, Daniel J. Tward, Cindy T. J. van Velthoven, Quanxin Wang, Fangming Xie, Hua Xu, Zizhen Yao, Zhixi Yun

    出版 2023
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