Search Results - Ethan Cerami

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  1. 1
    Mutual exclusivity analysis identifies oncogenic network modules

    Mutual exclusivity analysis identifies oncogenic network modules by Giovanni Ciriello, Ethan Cerami, Chris Sander, Nikolaus Schultz

    Published 2011
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  2. 2
    cPath: open source software for collecting, storing, and querying biological pathways

    cPath: open source software for collecting, storing, and querying biological pathways by Ethan Cerami, Gary D. Bader, Benjamin Groß, Chris Sander

    Published 2006
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  3. 3
    Automated Network Analysis Identifies Core Pathways in Glioblastoma

    Automated Network Analysis Identifies Core Pathways in Glioblastoma by Ethan Cerami, Emek Demir, Nikolaus Schultz, Barry S. Taylor, Chris Sander

    Published 2010
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  4. 4
    The landscape of kinase fusions in cancer

    The landscape of kinase fusions in cancer by Nicolas Stransky, Ethan Cerami, Stefanie S. Schalm, Joseph L. Kim, Christoph Lengauer

    Published 2014
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  5. 5
    Artificial Intelligence in Oncology: Current Landscape, Challenges, and Future Directions

    Artificial Intelligence in Oncology: Current Landscape, Challenges, and Future Directions by William Lotter, Michael J. Hassett, Nikolaus Schultz, Kenneth L. Kehl, Eliezer M. Van Allen, Ethan Cerami

    Published 2024
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  6. 6
    Pathway Commons, a web resource for biological pathway data

    Pathway Commons, a web resource for biological pathway data by Ethan Cerami, Benjamin Groß, Emek Demir, Igor Rodchenkov, Özgün Babur, Nadia Anwar, Nikolaus Schultz, Gary D. Bader, Chris Sander

    Published 2010
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  7. 7
    BRCA1 Immunohistochemistry in a Molecularly Characterized Cohort of Ovarian High-Grade Serous Carcinomas

    BRCA1 Immunohistochemistry in a Molecularly Characterized Cohort of Ovarian High-Grade Serous Carcinomas by Karuna Garg, Douglas A. Levine, Narciso Olvera, Fanny Dao, Maria Bisogna, Angeles Alvarez Secord, Andrew Berchuck, Ethan Cerami, Nikolaus Schultz, Robert A. Soslow

    Published 2012
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  8. 8
    Clinical Trial Notifications Triggered by Artificial Intelligence–Detected Cancer Progression

    Clinical Trial Notifications Triggered by Artificial Intelligence–Detected Cancer Progression by Tali Mazor, Karim S. Farhat, Pavel Trukhanov, James Lindsay, Matthew Galvin, Emily Mallaber, Paul Morgan, Michael J. Hassett, Deborah Schrag, Ethan Cerami, Kenneth L. Kehl

    Published 2025
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  9. 9
    Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

    Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal by Jianjiong Gao, Bülent Arman Aksoy, Uḡur Doḡrusöz, Gideon Dresdner, Benjamin Groß, S. Onur Sumer, Yichao Sun, Anders J. Skanderup, Rileen Sinha, Erik Larsson, Ethan Cerami, Chris Sander, Nikolaus Schultz

    Published 2013
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  10. 10
    Comparative Oncogenomics Implicates the Neurofibromin 1 Gene (<i>NF1</i>) as a Breast Cancer Driver

    Comparative Oncogenomics Implicates the Neurofibromin 1 Gene (<i>NF1</i>) as a Breast Cancer Driver by Marsha D. Wallace, Adam D. Pfefferle, Li Shen, Adrian J. McNairn, Ethan Cerami, Barbara L Fallon, Vera D. Rinaldi, Teresa Southard, Charles M. Perou, John C. Schimenti

    Published 2012
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  11. 11
    The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data

    The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data by Ethan Cerami, Jianjiong Gao, Uḡur Doḡrusöz, Benjamin Groß, S. Onur Sumer, Bülent Arman Aksoy, Anders J. Skanderup, Caitlin J. Byrne, Michael Heuer, Erik Larsson, Yevgeniy Antipin, Boris Reva, Arthur P. Goldberg, Chris Sander, Nikolaus Schultz

    Published 2012
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  12. 12
    Genomic analyses of gynaecologic carcinosarcomas reveal frequent mutations in chromatin remodelling genes

    Genomic analyses of gynaecologic carcinosarcomas reveal frequent mutations in chromatin remodelling genes by Siân Jones, Nicolas Stransky, Christine L. McCord, Ethan Cerami, James Lagowski, Devon D. Kelly, Samuel V. Angiuoli, Mark Sausen, Lisa Kann, Manish Shukla, Rosemary Makar, Laura D. Wood, Luis A. Díaz, Christoph Lengauer, Victor E. Velculescu

    Published 2014
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  13. 13
    Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

    Pathway Commons 2019 Update: integration, analysis and exploration of pathway data by Igor Rodchenkov, Özgün Babur, Augustin Luna, Bülent Arman Aksoy, Jeffrey V. Wong, Dylan Fong, Max Franz, Metin Can Siper, Manfred Cheung, Michael Wrana, Harsh Mistry, Logan Mosier, Jonah Dlin, Qizhi Wen, Caitlin O’Callaghan, Wanxin Li, G Domingues Elder, Peter T. Smith, Christian Dallago, Ethan Cerami, Benjamin Groß, Uḡur Doḡrusöz, Emek Demir, Gary D. Bader, Chris Sander

    Published 2019
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  14. 14
    Integrative Genomic Profiling of Human Prostate Cancer

    Integrative Genomic Profiling of Human Prostate Cancer by Barry S. Taylor, Nikolaus Schultz, Haley Hieronymus, Anuradha Gopalan, Yonghong Xiao, Brett S. Carver, Vivek Arora, Poorvi Kaushik, Ethan Cerami, Boris Reva, Yevgeniy Antipin, Nicholas Mitsiades, Thomas Landers, Igor Dolgalev, John E. Major, Manda Wilson, Nicholas D. Socci, Alex E. Lash, Adriana Heguy, James A. Eastham, Howard I. Scher, Victor E. Reuter, Peter T. Scardino, Chris Sander, Charles L. Sawyers, William L. Gerald

    Published 2010
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  15. 15
    Sharing data from the Human Tumor Atlas Network through standards, infrastructure and community engagement

    Sharing data from the Human Tumor Atlas Network through standards, infrastructure and community engagement by Ino de Bruijn, Milen Nikolov, Clarisse Lau, Ashley Clayton, David L. Gibbs, Elvira Mitraka, Dar’ya Pozhidayeva, Alex E. Lash, S. Onur Sumer, Jennifer Altreuter, Kristen Anton, Mialy DeFelice, Xiang Li, Aaron Lisman, William J.R. Longabaugh, Jeremy L. Muhlich, Sandro Santagata, Subhiksha Nandakumar, Peter K. Sorger, Christine Suver, Xengie Doan, Justin Guinney, Nikolaus Schultz, Adam Taylor, Vésteinn Thórsson, Ethan Cerami, James A. Eddy

    Published 2025
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  16. 16
    Integration of biological networks and gene expression data using Cytoscape

    Integration of biological networks and gene expression data using Cytoscape by Melissa Cline, Michael Smoot, Ethan Cerami, Allan Kuchinsky, Nerius Landys, Christopher T. Workman, Rowan H. Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Groß, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John H. Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Pengliang Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy Warner, Trey Ideker, Gary D. Bader

    Published 2007
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  17. 17
    Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions

    Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions by Samuel Kerrien, Sandra Orchard, Luisa Montecchi‐Palazzi, Bruno Aranda, A. F. Quinn, Nisha Vinod, Gary D. Bader, Ioannis Xénarios, Jérôme Wojcik, David James Sherman, Mike Tyers, John J Salama, Susan Moore, Arnaud Céol, Andrew Chatr‐aryamontri, Matthias Oesterheld, Volker Stümpflen, Łukasz Salwiński, Jason Nerothin, Ethan Cerami, Michael E. Cusick, Marc Vidal, Michael K. Gilson, J. T. Armstrong, Peter Woollard, Christopher W.V. Hogue, David Eisenberg, Gianni Cesareni, Rolf Apweiler, Henning Hermjakob

    Published 2007
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  18. 18
    MatchMiner: an open-source platform for cancer precision medicine

    MatchMiner: an open-source platform for cancer precision medicine by Harry Klein, Tali Mazor, Ethan Siegel, Pavel Trukhanov, Andrea Ovalle, Catherine Del Vecchio Fitz, Zachary Zwiesler, Priti Kumari, Bernd Van Der Veen, Eric Marriott, Jason Hansel, Joyce E. Yu, Adem Albayrak, Susan Barry, Rachel B. Keller, Laura E. MacConaill, Neal I. Lindeman, Bruce E. Johnson, Barrett J. Rollins, T. Khanh, Brian Beardslee, Geoffrey I. Shapiro, Suzanne Hector-Barry, John Methot, Lynette M. Sholl, James Lindsay, Michael J. Hassett, Ethan Cerami

    Published 2022
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  19. 19
    Genomic Characterization of <i>de novo</i> Metastatic Breast Cancer

    Genomic Characterization of <i>de novo</i> Metastatic Breast Cancer by Ana C. Garrido-Castro, Liam F. Spurr, Melissa E. Hughes, Yvonne Y. Li, Andrew D. Cherniack, Priti Kumari, Maxwell R. Lloyd, Brittany Bychkovsky, Romualdo Barroso‐Sousa, Simona Di Lascio, Esha Jain, Janet Files, Ayesha Mohammed-Abreu, Max Krevalin, Colin MacKichan, William T. Barry, Hao Guo, Daniel Xia, Ethan Cerami, Barrett J. Rollins, Laura E. MacConaill, Neal I. Lindeman, Ian E. Krop, Bruce E. Johnson, Nikhil Wagle, Eric P. Winer, Deborah Dillon, Nancy U. Lin

    Published 2020
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  20. 20
    A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

    A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer by Alex H. Wagner, Brian Walsh, Georgia Mayfield, David Tamborero, Dmitriy Sonkin, Kilannin Krysiak, Jordi Deu-Pons, Ryan P. Duren, Jianjiong Gao, Julie A. McMurry, Sara E. Patterson, Catherine Del Vecchio Fitz, Beth A. Pitel, Uğur Sezerman, Kyle Ellrott, Jeremy L. Warner, Damian Rieke, Tero Aittokallio, Ethan Cerami, Deborah Ritter, Lynn M. Schriml, Robert R. Freimuth, Melissa Haendel, Gordana Raca, Subha Madhavan, Michael Baudis, J. Beckmann, Rodrigo Dienstmann, Debyani Chakravarty, Xuan Shirley Li, Susan M. Mockus, Olivier Elemento, Nikolaus Schultz, Núria López-Bigas, Mark Lawler, Jeremy Goecks, Malachi Griffith, Obi L. Griffith, Adam A. Margolin

    Published 2020
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