Search Results - Esther Rheinbay

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  1. 1
    Loss of chromosome Y in primary tumors

    Loss of chromosome Y in primary tumors by Meifang Qi, Jiali Pang, Irene Mitsiades, Andrew A. Lane, Esther Rheinbay

    Published 2023
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  2. 2
    H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions

    H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions by Manching Ku, Jacob D. Jaffe, Richard P. Koche, Esther Rheinbay, Mitsuhiro Endoh, Haruhiko Koseki, Steven A. Carr, B Bernstein

    Published 2012
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  3. 3
    RNA transcripts stimulate homologous recombination by forming DR-loops

    RNA transcripts stimulate homologous recombination by forming DR-loops by Jian Ouyang, Tribhuwan Yadav, Jiamin Zhang, Haibo Yang, Esther Rheinbay, Hongshan Guo, Daniel A. Haber, Li Lan, Lee Zou

    Published 2021
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  4. 4
    SVelfie: A method for discovering cancer drivers based on enrichment of likely functional structural variants

    SVelfie: A method for discovering cancer drivers based on enrichment of likely functional structural variants by Xavi Loinaz, Judith Dagan, Jean-Baptiste Alberge, Antonia Kowalewski, Mendy Miller, Julian M. Hess, Esther Rheinbay, Chip Stewart, Gad Getz

    Published 2025
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  5. 5
    Imp2 controls oxidative phosphorylation and is crucial for preserving glioblastoma cancer stem cells

    Imp2 controls oxidative phosphorylation and is crucial for preserving glioblastoma cancer stem cells by Michalina Janiszewska, Mario L. Suvà, Nicolò Riggi, Riekelt H. Houtkooper, Johan Auwerx, Virginie Clément‐Schatlo, Ivan Radovanovic, Esther Rheinbay, Paolo Provero, Ivan Stamenkovic

    Published 2012
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  6. 6
    Wilms Tumor Chromatin Profiles Highlight Stem Cell Properties and a Renal Developmental Network

    Wilms Tumor Chromatin Profiles Highlight Stem Cell Properties and a Renal Developmental Network by Aviva Presser Aiden, Miguel N. Rivera, Esther Rheinbay, Manching Ku, Erik J. Coffman, Thanh Tung Truong, Sara O. Vargas, Eric S. Lander, Daniel A. Haber, B Bernstein

    Published 2010
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  7. 7
    DeTiN: overcoming tumor-in-normal contamination

    DeTiN: overcoming tumor-in-normal contamination by Amaro Taylor‐Weiner, Chip Stewart, Thomas J. Giordano, Mendy Miller, Mara Rosenberg, Alyssa Macbeth, Niall J. Lennon, Esther Rheinbay, Dan‐Avi Landau, Catherine J. Wu, Gad Getz

    Published 2018
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  8. 8
    An Aberrant Transcription Factor Network Essential for Wnt Signaling and Stem Cell Maintenance in Glioblastoma

    An Aberrant Transcription Factor Network Essential for Wnt Signaling and Stem Cell Maintenance in Glioblastoma by Esther Rheinbay, Mario L. Suvà, Shawn Gillespie, Hiroaki Wakimoto, Anoop P. Patel, Mohd Shahid, Ozgur Oksuz, Samuel D. Rabkin, Robert L. Martuza, Miguel N. Rivera, David N. Louis, Simon Kasif, S. Andrew, B Bernstein

    Published 2013
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  9. 9
    Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains

    Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains by Manching Ku, Richard P. Koche, Esther Rheinbay, Eric M. Mendenhall, Mitsuhiro Endoh, Tarjei S. Mikkelsen, Aviva Presser, Chad Nusbaum, Xiaohui Xie, S. Andrew, Mazhar Adli, Simon Kasif, Leon M. Ptaszek, Chad A. Cowan, Eric S. Lander, Haruhiko Koseki, B Bernstein

    Published 2008
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  10. 10
    Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair

    Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair by Nicholas J. Haradhvala, Paz Polak, Petar Stojanov, Kyle R. Covington, Eve Shinbrot, Julian M. Hess, Esther Rheinbay, Jaegil Kim, Yosef E. Maruvka, Lior Z. Braunstein, Atanas Kamburov, Philip C. Hanawalt, David A. Wheeler, Amnon Koren, Michael S. Lawrence, Gad Getz

    Published 2016
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  11. 11
    Analysis of somatic microsatellite indels identifies driver events in human tumors

    Analysis of somatic microsatellite indels identifies driver events in human tumors by Yosef E. Maruvka, Kent W. Mouw, Rosa Karlić, Prasanna Parasuraman, Atanas Kamburov, Paz Polak, Nicholas J. Haradhvala, Julian M. Hess, Esther Rheinbay, Yehuda Brody, Amnon Koren, Lior Z. Braunstein, Alan D. D’Andrea, Michael S. Lawrence, Adam J. Bass, André Bernards, Franziska Michor, Gad Getz

    Published 2017
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  12. 12
    EWS-FLI1 Utilizes Divergent Chromatin Remodeling Mechanisms to Directly Activate or Repress Enhancer Elements in Ewing Sarcoma

    EWS-FLI1 Utilizes Divergent Chromatin Remodeling Mechanisms to Directly Activate or Repress Enhancer Elements in Ewing Sarcoma by Nicolò Riggi, Birgit Knoechel, Shawn Gillespie, Esther Rheinbay, Gaylor Boulay, Mario L. Suvà, Nikki E. Rossetti, Wannaporn E. Boonseng, Ozgur Oksuz, Edward Cook, Aurélie Formey, Anoop P. Patel, Melissa Gymrek, Vishal Thapar, Vikram Deshpande, David T. Ting, Francis J. Hornicek, G. Petur Nielsen, Ivan Stamenkovic, Martin J. Aryee, B Bernstein, Miguel N. Rivera

    Published 2014
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  13. 13
    CXCR6 positions cytotoxic T cells to receive critical survival signals in the tumor microenvironment

    CXCR6 positions cytotoxic T cells to receive critical survival signals in the tumor microenvironment by Mauro Di Pilato, Raphael Kfuri‐Rubens, Jasper N. Pruessmann, Aleksandra J. Ozga, Marius Messemaker, Bruno L. Cadilha, Ramya Sivakumar, Chiara Cianciaruso, Ross D. Warner, Francesco Marangoni, Esteban Carrizosa, Stefanie Lesch, James M. Billingsley, Daniel W. Pérez-Ramos, Fidel Zavala, Esther Rheinbay, Andrew D. Luster, Michael Y. Gerner, Sebastian Kobold, Mikaël J. Pittet, Thorsten R. Mempel

    Published 2021
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  14. 14
    Reconstructing and Reprogramming the Tumor-Propagating Potential of Glioblastoma Stem-like Cells

    Reconstructing and Reprogramming the Tumor-Propagating Potential of Glioblastoma Stem-like Cells by Mario L. Suvà, Esther Rheinbay, Shawn Gillespie, Anoop P. Patel, Hiroaki Wakimoto, Samuel D. Rabkin, Nicolò Riggi, S. Andrew, Daniel P. Cahill, Brian V. Nahed, William T. Curry, Robert L. Martuza, Miguel N. Rivera, Nikki E. Rossetti, Simon Kasif, Samantha Beik, Sabah Kadri, Itay Tirosh, Ivo Wortman, Alex K. Shalek, Orit Rozenblatt–Rosen, Aviv Regev, David N. Louis, B Bernstein

    Published 2014
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  15. 15
    The whole-genome panorama of cancer drivers

    The whole-genome panorama of cancer drivers by Radhakrishnan Sabarinathan, Oriol Pich, Iñigo Martincorena, Carlota Rubio-Pérez, Malene Juul, Jeremiah A. Wala, Steven E. Schumacher, Ofer Shapira, Nikos Sidiropoulos, Sebastian M. Waszak, David Tamborero, Loris Mularoni, Esther Rheinbay, Henrik Hornshøj, Jordi Deu-Pons, Ferran Muiños, Johanna Bertl, Qianyun Guo, Chad J. Creighton, Joachim Weischenfeldt, Jan Korbel, Gad Getz, Peter J. Campbell, Jakob Skou Pedersen, Rameen Beroukhim, Abel Pérez‐González, Núria López-Bigas

    Published 2017
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  16. 16
    Recurrent and functional regulatory mutations in breast cancer

    Recurrent and functional regulatory mutations in breast cancer by Esther Rheinbay, Prasanna Parasuraman, Jonna Grimsby, Grace Tiao, J Engreitz, Jaegil Kim, Michael S. Lawrence, Amaro Taylor‐Weiner, Sergio Rodrı́guez-Cuevas, Mara Rosenberg, Julian M. Hess, Chip Stewart, Yosef E. Maruvka, Petar Stojanov, Maria L. Cortés, Sara Seepo, Carrie Cibulskis, Adam Tracy, Trevor J. Pugh, Jesse Lee, Zongli Zheng, Leif W. Ellisen, A. John Iafrate, Jesse S. Boehm, Stacey Gabriel, Matthew Meyerson, Todd R. Golub, José Baselga, Alfredo Hidalgo‐Miranda, Toshi Shioda, André Bernards, Eric S. Lander, Gad Getz

    Published 2017
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  17. 17
    Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma

    Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma by Jennifer A. Perry, Adam Kieżun, Peter Tonzi, Eliezer M. Van Allen, Scott L. Carter, Sylvan C. Baca, Glenn S. Cowley, Ami S. Bhatt, Esther Rheinbay, Chandra Sekhar Pedamallu, Elena Helman, Amaro Taylor‐Weiner, Aaron McKenna, David S. DeLuca, Michael S. Lawrence, Lauren Ambrogio, Carrie Sougnez, Andrey Sivachenko, Loren D. Walensky, Nikhil Wagle, Jaume Mora, Carmen de Torres, Cinzia Lavarino, Simone dos Santos Aguiar, José Andrés Yunes, Sílvia Regina Brandalise, Gabriela Mercado, Jorge Meléndez-Zajgla, Rocío Cárdenas‐Cardós, Liliana Velasco‐Hidalgo, Charles W.M. Roberts, Levi A. Garraway, Carlos Rodríguez‐Galindo, Stacey Gabriel, Eric S. Lander, Todd R. Golub, Stuart H. Orkin, Gad Getz, Katherine A. Janeway

    Published 2014
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  18. 18
    Evolution of pathogenicity and sexual reproduction in eight Candida genomes

    Evolution of pathogenicity and sexual reproduction in eight Candida genomes by Geraldine Butler, Matthew D. Rasmussen, Michael Lin, Manuel A. S. Santos, Sharadha Sakthikumar, Carol A. Munro, Esther Rheinbay, Manfred Grabherr, Anja Forche, Jennifer L. Reedy, Ino Agrafioti, Martha B. Arnaud, Steven Bates, Alistair J. P. Brown, Sascha Brunke, Maria C. Costanzo, David A. Fitzpatrick, Piet W. J. de Groot, David Harris, Lois L. Hoyer, Bernhard Hube, Frans M. Klis, Chinnappa D. Kodira, Nicola Lennard, Mary E. Logue, Ronny Martin, Aaron M. Neiman, Elissavet Nikolaou, Michael A. Quail, Janet Quinn, Conceição Santos, Florian Schmitzberger, Gavin Sherlock, Prachi Shah, Kevin A.T. Silverstein, Marek S. Skrzypek, David R. Soll, Rodney Staggs, Ian Stansfield, Michael P. H. Stumpf, Peter E. Sudbery, Thyagarajan Srikantha, Qiandong Zeng, Judith Berman, Matthew Berriman, Joseph Heitman, Neil A. R. Gow, Michael Lorenz, Bruce W. Birren, Manolis Kellis, Christina A. Cuomo

    Published 2009
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  19. 19
    Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

    Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes by Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Pedersen, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Johanna Bertl, Priyanka Dhingra, Klev Diamanti, Abel González-Pérez, Qianyun Guo, Nicholas J. Haradhvala, Keren Isaev, Malene Juul, Jan Komorowski, Sushant Kumar, Donghoon Lee, Lucas Lochovsky, Eric Minwei Liu, Oriol Pich, David Tamborero, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Jing Zhang, Keith A. Boroevich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Nuno A. Fonseca, Mark P. Hamilton, Chen Hong, André Kahles, Young-Wook Kim, Kjong-Van Lehmann, Todd A. Johnson, Abdullah Kahraman, Keunchil Park, Gordon Saksena, Lina Sieverling, Nicholas A. Sinnott‐Armstrong, Peter J. Campbell, Asger Hobolth, Manolis Kellis, Michael S. Lawrence, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Núria López-Bigas, Iñigo Martincorena, Jakob Skou Pedersen, Gad Getz

    Published 2017
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  20. 20
    Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

    Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway by Jian Carrot‐Zhang, Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago C. Silva, Christopher K. Wong, Hyo Young Choi, Ina Felau, A. Gordon Robertson, Mauro A. A. Castro, Lisui Bao, Esther Rheinbay, Eric Minwei Liu, Tuan Trieu, David Haan, Christina Yau, Toshinori Hinoue, Yuexin Liu, Ofer Shapira, Kiran Kumar, Karen Mungall, Hailei Zhang, Jake June-Koo Lee, Ashton C. Berger, Galen F. Gao, Binyamin Zhitomirsky, Wen-Wei Liang, Meng Zhou, Sitapriya Moorthi, Alice H. Berger, Jun Li, Michael C. Zody, Li Ding, Andrew D. Cherniack, Gad Getz, Olivier Elemento, Christopher C. Benz, Joshua M. Stuart, Jean C. Zenklusen, Rameen Beroukhim, Jason C. Chang, Joshua D. Campbell, D. Neil Hayes, Lixing Yang, Peter W. Laird, John N. Weinstein, David J. Kwiatkowski, Ming‐Sound Tsao, William D. Travis, Ekta Khurana, Benjamin P. Berman, Katherine A. Hoadley, Nicolas Robine, Matthew Meyerson, Ramaswamy Govindan, Marcin Imieliński, Kanika Arora, Minita Shah, Jennifer M. G. Shelton, Reanne Bowlby, Verena Friedl, Mary J. Goldman, Brian Craft, David I. Heiman, Iman Hajirasouliha, Camir Ricketts, Pavana Anur, Kami Chiotti, Rory Johnson, John A. Demchok, Martin L. Ferguson, Anab Kemal, Roy Tarnuzzer, Linghua Wang, Liming Yang, Paul T. Spellman, Benjamin J. Raphael, Rehan Akbani, Jingchun Zhu, Steven J.M. Jones, Hui Shen

    Published 2021
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