Ngā hua rapu kaituhi :: APM

1

Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments mā Egor Dolzhenko, Andrew D. Smith

I whakaputaina 2014

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Artigo

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2

STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data mā Andreas Halman, Egor Dolzhenko, Alicia Oshlack

I whakaputaina 2022

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Artigo

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3

An Epigenetic Memory of Pregnancy in the Mouse Mammary Gland mā Camila O. dos Santos, Egor Dolzhenko, Emily Hodges, Andrew D. Smith, Gregory J. Hannon

I whakaputaina 2015

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Artigo

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4

A Murine Database of Structural Variants Enables the Genetic Architecture of a Spontaneous Murine Lymphoma to be Characterized mā Wenlong Ren, Zhuoqing Fang, Egor Dolzhenko, Christopher T. Saunders, Zhuanfen Cheng, Victoria Popic, Gary Peltz

I whakaputaina 2025

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Pré-impressão

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5

Genomes on the Edge: Programmed Genome Instability in Ciliates mā John R. Bracht, Wenwen Fang, Aaron D. Goldman, Egor Dolzhenko, Elizabeth M. Stein, Laura F. Landweber

I whakaputaina 2013

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Revisão

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6

Paragraph: a graph-based structural variant genotyper for short-read sequence data mā Sai Chen, Peter Krusche, Egor Dolzhenko, Rachel M. Sherman, Roman Petrovski, Felix Schlesinger, Melanie Kirsche, David Bentley, Michael C. Schatz, Fritz J. Sedlazeck, Michael A. Eberle

I whakaputaina 2019

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Artigo

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7

STRchive: a dynamic resource detailing population-level and locus-specific insights at tandem repeat disease loci mā Laurel Hiatt, Ben Weisburd, Egor Dolzhenko, Vincent Rubinetti, Akshay Kumar Avvaru, Grace E. VanNoy, Nehir Edibe Kurtas, Heidi L. Rehm, Aaron R. Quinlan, Harriet Dashnow

I whakaputaina 2025

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Artigo

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8

The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development mā Xiaohong Chen, John R. Bracht, Aaron D. Goldman, Egor Dolzhenko, Derek M. Clay, Estienne C. Swart, Hyun Joo An, Thomas G. Doak, Andrew B. Stuart, Chris T. Amemiya, Robert Sebra, Laura F. Landweber

I whakaputaina 2014

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Artigo

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9

RExPRT: a machine learning tool to predict pathogenicity of tandem repeat loci mā Sarah Fazal, Matt C. Danzi, Isaac Xu, Shilpa N. Kobren, Shamil Sunyaev, Chloe M. Reuter, Shruti Marwaha, Matthew T. Wheeler, Egor Dolzhenko, Francesca Lucas, Stefan Wuchty, Mustafa Tekin, Stephan Züchner, Vanessa Aguiar‐Pulido

I whakaputaina 2024

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Artigo

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10

Detailed tandem repeat allele profiling in 1,027 long-read genomes reveals genome-wide patterns of pathogenicity mā Matt C. Danzi, Isaac Xu, Sarah Fazal, Egor Dolzhenko, David Pellerin, Ben Weisburd, Chloe M. Reuter, Jacinda B. Sampson, Chiara Folland, Matthew L. Wheeler, Anne O’Donnell‐Luria, Stefan Wuchty, Gianina Ravenscroft, Michael A. Eberle, Stephan Züchner

I whakaputaina 2025

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Pré-impressão

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11

Molecular characterization of the transition from acute to chronic kidney injury following ischemia/reperfusion mā Jing Liu, Sanjeev Kumar, Egor Dolzhenko, Gregory F. Alvarado, Jinjin Guo, Can Lü, Yibu Chen, Meng Li, Mark C. Dessing, Riana K. Parvez, Pietro E. Cippà, A. Michaela Krautzberger, Gohar Saribekyan, Andrew D. Smith, Andrew P. McMahon

I whakaputaina 2017

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Artigo

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12

The APOE4 allele shows opposite sex bias in microbleeds and Alzheimer's disease of humans and mice mā Mafalda Cacciottolo, Amy Christensen, Alexandra Moser, Jiahui Liu, Christian J. Pike, Conor Smith, Mary Jo LaDu, Patrick M. Sullivan, Todd E. Morgan, Egor Dolzhenko, Andreas Charidimou, Lars‐Olof Wahlund, Maria Kristoffersen Wiberg, Sara Shams, Gloria Chiang, Caleb E. Finch

I whakaputaina 2015

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Artigo

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13

lncRNA requirements for mouse acute myeloid leukemia and normal differentiation mā M. Joaquina Delás, Leah R. Sabin, Egor Dolzhenko, Simon Knott, Ester Munera-Maravilla, Benjamin T. Jackson, Sophia A. Wild, Tatjana Kovačević, Eva Maria Stork, Meng Zhou, Nicolas Erard, Emily Lee, David R. Kelley, Mareike Roth, Inês Amorim Monteiro Barbosa, Johannes Zuber, John L. Rinn, Andrew D. Smith, Gregory J. Hannon

I whakaputaina 2017

Whiwhi kuputuhi katoa
Artigo

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14

A deep population reference panel of tandem repeat variation mā Helyaneh Ziaei Jam, Yang Li, Ross DeVito, Nima Mousavi, Nichole Ma, Ibra Lujumba, Yagoub Adam, Mikhail O. Maksimov, Bonnie Huang, Egor Dolzhenko, Yunjiang Qiu, Fredrick Elishama Kakembo, Habi Joseph, Blessing Onyido, Jumoke Adeyemi, Mehrdad Bakhtiari, Jonghun Park, Sara Javadzadeh, Daudi Jjingo, Marion O. Adebiyi, Vineet Bafna, Melissa Gymrek

I whakaputaina 2023

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Artigo

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15

HiFi long-read genomes for difficult-to-detect, clinically relevant variants mā Wolfram Höps, Marjan M. Weiss, Ronny Derks, Jordi Corominas Galbany, Amber den Ouden, Simone van den Heuvel, Raoul Timmermans, Jos G.A. Smits, Tom Mokveld, Egor Dolzhenko, Xiao Chen, Arthur van den Wijngaard, Michael A. Eberle, Helger G. Yntema, Alexander Hoischen, Christian Gilissen, Lisenka E.L.M. Vissers

I whakaputaina 2025

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Artigo

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16

Length of Uninterrupted CAG, Independent of Polyglutamine Size, Results in Increased Somatic Instability, Hastening Onset of Huntington Disease mā Galen E.B. Wright, Jennifer A. Collins, Chris Kay, Cassandra McDonald, Egor Dolzhenko, Qingwen Xia, Kristina Bečanović, Britt I. Drögemöller, Alicia Semaka, Charlotte Nguyen, Brett Trost, Fiona Richards, Emilia K. Bijlsma, Ferdinando Squitieri, Colin J.D. Ross, Stephen W. Scherer, Michael A. Eberle, Ryan K. C. Yuen, Michael R. Hayden

I whakaputaina 2019

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Artigo

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17

ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data mā Egor Dolzhenko, Mark F. Bennett, Phillip A. Richmond, Brett Trost, Sai Chen, Joke J.F.A. van Vugt, Charlotte Nguyen, Giuseppe Narzisi, Vladimir G. Gainullin, Andrew M. Gross, Bryan R. Lajoie, Ryan J. Taft, Wyeth W. Wasserman, Stephen W. Scherer, Jan H. Veldink, David Bentley, Ryan K. C. Yuen, Melanie Bahlo, Michael A. Eberle

I whakaputaina 2020

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Artigo

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18

Resolving the unsolved: Comprehensive assessment of tandem repeats at scale mā Egor Dolzhenko, Adam C. English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J. Rowell, Caitlin Karniski, Zev Kronenberg, Matt C. Danzi, Warren Cheung, Chengpeng Bi, Emily Farrow, Aaron M. Wenger, Verónica Martínez‐Cerdeño, Trevor Bartley, Peng Jin, David L. Nelson, Stephan Züchner, Tomi Pastinen, Aaron R. Quinlan, Fritz J. Sedlazeck, Michael A. Eberle

I whakaputaina 2023

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Pré-impressão

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19

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions mā Egor Dolzhenko, Viraj Deshpande, Felix Schlesinger, Peter Krusche, Roman Petrovski, Sai Chen, Dorothea Emig-Agius, Andrew M. Gross, Giuseppe Narzisi, Brett Bowman, Konrad Scheffler, Joke J.F.A. van Vugt, Courtney E. French, Alba Sanchis‐Juan, Kristina Ibáñez, Arianna Tucci, Bryan R. Lajoie, Jan H. Veldink, F. Lucy Raymond, Ryan J. Taft, David Bentley, Michael A. Eberle

I whakaputaina 2019

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Artigo

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20

Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions mā Indhu‐Shree Rajan‐Babu, Junran J. Peng, Readman Chiu, Patricia Birch, Madeline Couse, Colleen Guimond, Anna Lehman, Jill Mwenifumbo, Clara van Karnebeek, Jan M. Friedman, Shelin Adam, Christèle du Souich, Alison M. Elliott, Anna Lehman, Jill Mwenifumbo, Tanya N. Nelson, Clara van Karnebeek, Jan M. Friedman, Chenkai Li, Arezoo Mohajeri, Egor Dolzhenko, Michael A. Eberle, İnanç Birol, Jan M. Friedman

I whakaputaina 2021

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Artigo

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