Søgeresultater - Egor Dolzhenko

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  1. 1
    Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments

    Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments af Egor Dolzhenko, Andrew D. Smith

    Udgivet 2014
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  2. 2
    STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data

    STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data af Andreas Halman, Egor Dolzhenko, Alicia Oshlack

    Udgivet 2022
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  3. 3
    An Epigenetic Memory of Pregnancy in the Mouse Mammary Gland

    An Epigenetic Memory of Pregnancy in the Mouse Mammary Gland af Camila O. dos Santos, Egor Dolzhenko, Emily Hodges, Andrew D. Smith, Gregory J. Hannon

    Udgivet 2015
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  4. 4
    A Murine Database of Structural Variants Enables the Genetic Architecture of a Spontaneous Murine Lymphoma to be Characterized

    A Murine Database of Structural Variants Enables the Genetic Architecture of a Spontaneous Murine Lymphoma to be Characterized af Wenlong Ren, Zhuoqing Fang, Egor Dolzhenko, Christopher T. Saunders, Zhuanfen Cheng, Victoria Popic, Gary Peltz

    Udgivet 2025
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  5. 5
    Genomes on the Edge: Programmed Genome Instability in Ciliates

    Genomes on the Edge: Programmed Genome Instability in Ciliates af John R. Bracht, Wenwen Fang, Aaron D. Goldman, Egor Dolzhenko, Elizabeth M. Stein, Laura F. Landweber

    Udgivet 2013
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  6. 6
    Paragraph: a graph-based structural variant genotyper for short-read sequence data

    Paragraph: a graph-based structural variant genotyper for short-read sequence data af Sai Chen, Peter Krusche, Egor Dolzhenko, Rachel M. Sherman, Roman Petrovski, Felix Schlesinger, Melanie Kirsche, David Bentley, Michael C. Schatz, Fritz J. Sedlazeck, Michael A. Eberle

    Udgivet 2019
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  7. 7
    STRchive: a dynamic resource detailing population-level and locus-specific insights at tandem repeat disease loci

    STRchive: a dynamic resource detailing population-level and locus-specific insights at tandem repeat disease loci af Laurel Hiatt, Ben Weisburd, Egor Dolzhenko, Vincent Rubinetti, Akshay Kumar Avvaru, Grace E. VanNoy, Nehir Edibe Kurtas, Heidi L. Rehm, Aaron R. Quinlan, Harriet Dashnow

    Udgivet 2025
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  8. 8
    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development

    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development af Xiaohong Chen, John R. Bracht, Aaron D. Goldman, Egor Dolzhenko, Derek M. Clay, Estienne C. Swart, Hyun Joo An, Thomas G. Doak, Andrew B. Stuart, Chris T. Amemiya, Robert Sebra, Laura F. Landweber

    Udgivet 2014
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  9. 9
    RExPRT: a machine learning tool to predict pathogenicity of tandem repeat loci

    RExPRT: a machine learning tool to predict pathogenicity of tandem repeat loci af Sarah Fazal, Matt C. Danzi, Isaac Xu, Shilpa N. Kobren, Shamil Sunyaev, Chloe M. Reuter, Shruti Marwaha, Matthew T. Wheeler, Egor Dolzhenko, Francesca Lucas, Stefan Wuchty, Mustafa Tekin, Stephan Züchner, Vanessa Aguiar‐Pulido

    Udgivet 2024
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  10. 10
    Detailed tandem repeat allele profiling in 1,027 long-read genomes reveals genome-wide patterns of pathogenicity

    Detailed tandem repeat allele profiling in 1,027 long-read genomes reveals genome-wide patterns of pathogenicity af Matt C. Danzi, Isaac Xu, Sarah Fazal, Egor Dolzhenko, David Pellerin, Ben Weisburd, Chloe M. Reuter, Jacinda B. Sampson, Chiara Folland, Matthew L. Wheeler, Anne O’Donnell‐Luria, Stefan Wuchty, Gianina Ravenscroft, Michael A. Eberle, Stephan Züchner

    Udgivet 2025
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  11. 11
    Molecular characterization of the transition from acute to chronic kidney injury following ischemia/reperfusion

    Molecular characterization of the transition from acute to chronic kidney injury following ischemia/reperfusion af Jing Liu, Sanjeev Kumar, Egor Dolzhenko, Gregory F. Alvarado, Jinjin Guo, Can Lü, Yibu Chen, Meng Li, Mark C. Dessing, Riana K. Parvez, Pietro E. Cippà, A. Michaela Krautzberger, Gohar Saribekyan, Andrew D. Smith, Andrew P. McMahon

    Udgivet 2017
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  12. 12
    The APOE4 allele shows opposite sex bias in microbleeds and Alzheimer's disease of humans and mice

    The APOE4 allele shows opposite sex bias in microbleeds and Alzheimer's disease of humans and mice af Mafalda Cacciottolo, Amy Christensen, Alexandra Moser, Jiahui Liu, Christian J. Pike, Conor Smith, Mary Jo LaDu, Patrick M. Sullivan, Todd E. Morgan, Egor Dolzhenko, Andreas Charidimou, Lars‐Olof Wahlund, Maria Kristoffersen Wiberg, Sara Shams, Gloria Chiang, Caleb E. Finch

    Udgivet 2015
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  13. 13
    lncRNA requirements for mouse acute myeloid leukemia and normal differentiation

    lncRNA requirements for mouse acute myeloid leukemia and normal differentiation af M. Joaquina Delás, Leah R. Sabin, Egor Dolzhenko, Simon Knott, Ester Munera-Maravilla, Benjamin T. Jackson, Sophia A. Wild, Tatjana Kovačević, Eva Maria Stork, Meng Zhou, Nicolas Erard, Emily Lee, David R. Kelley, Mareike Roth, Inês Amorim Monteiro Barbosa, Johannes Zuber, John L. Rinn, Andrew D. Smith, Gregory J. Hannon

    Udgivet 2017
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  14. 14
    A deep population reference panel of tandem repeat variation

    A deep population reference panel of tandem repeat variation af Helyaneh Ziaei Jam, Yang Li, Ross DeVito, Nima Mousavi, Nichole Ma, Ibra Lujumba, Yagoub Adam, Mikhail O. Maksimov, Bonnie Huang, Egor Dolzhenko, Yunjiang Qiu, Fredrick Elishama Kakembo, Habi Joseph, Blessing Onyido, Jumoke Adeyemi, Mehrdad Bakhtiari, Jonghun Park, Sara Javadzadeh, Daudi Jjingo, Marion O. Adebiyi, Vineet Bafna, Melissa Gymrek

    Udgivet 2023
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  15. 15
    HiFi long-read genomes for difficult-to-detect, clinically relevant variants

    HiFi long-read genomes for difficult-to-detect, clinically relevant variants af Wolfram Höps, Marjan M. Weiss, Ronny Derks, Jordi Corominas Galbany, Amber den Ouden, Simone van den Heuvel, Raoul Timmermans, Jos G.A. Smits, Tom Mokveld, Egor Dolzhenko, Xiao Chen, Arthur van den Wijngaard, Michael A. Eberle, Helger G. Yntema, Alexander Hoischen, Christian Gilissen, Lisenka E.L.M. Vissers

    Udgivet 2025
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  16. 16
    Length of Uninterrupted CAG, Independent of Polyglutamine Size, Results in Increased Somatic Instability, Hastening Onset of Huntington Disease

    Length of Uninterrupted CAG, Independent of Polyglutamine Size, Results in Increased Somatic Instability, Hastening Onset of Huntington Disease af Galen E.B. Wright, Jennifer A. Collins, Chris Kay, Cassandra McDonald, Egor Dolzhenko, Qingwen Xia, Kristina Bečanović, Britt I. Drögemöller, Alicia Semaka, Charlotte Nguyen, Brett Trost, Fiona Richards, Emilia K. Bijlsma, Ferdinando Squitieri, Colin J.D. Ross, Stephen W. Scherer, Michael A. Eberle, Ryan K. C. Yuen, Michael R. Hayden

    Udgivet 2019
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  17. 17
    ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data

    ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data af Egor Dolzhenko, Mark F. Bennett, Phillip A. Richmond, Brett Trost, Sai Chen, Joke J.F.A. van Vugt, Charlotte Nguyen, Giuseppe Narzisi, Vladimir G. Gainullin, Andrew M. Gross, Bryan R. Lajoie, Ryan J. Taft, Wyeth W. Wasserman, Stephen W. Scherer, Jan H. Veldink, David Bentley, Ryan K. C. Yuen, Melanie Bahlo, Michael A. Eberle

    Udgivet 2020
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  18. 18
    Resolving the unsolved: Comprehensive assessment of tandem repeats at scale

    Resolving the unsolved: Comprehensive assessment of tandem repeats at scale af Egor Dolzhenko, Adam C. English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J. Rowell, Caitlin Karniski, Zev Kronenberg, Matt C. Danzi, Warren Cheung, Chengpeng Bi, Emily Farrow, Aaron M. Wenger, Verónica Martínez‐Cerdeño, Trevor Bartley, Peng Jin, David L. Nelson, Stephan Züchner, Tomi Pastinen, Aaron R. Quinlan, Fritz J. Sedlazeck, Michael A. Eberle

    Udgivet 2023
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  19. 19
    ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions

    ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions af Egor Dolzhenko, Viraj Deshpande, Felix Schlesinger, Peter Krusche, Roman Petrovski, Sai Chen, Dorothea Emig-Agius, Andrew M. Gross, Giuseppe Narzisi, Brett Bowman, Konrad Scheffler, Joke J.F.A. van Vugt, Courtney E. French, Alba Sanchis‐Juan, Kristina Ibáñez, Arianna Tucci, Bryan R. Lajoie, Jan H. Veldink, F. Lucy Raymond, Ryan J. Taft, David Bentley, Michael A. Eberle

    Udgivet 2019
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  20. 20
    Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions

    Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions af Indhu‐Shree Rajan‐Babu, Junran J. Peng, Readman Chiu, Patricia Birch, Madeline Couse, Colleen Guimond, Anna Lehman, Jill Mwenifumbo, Clara van Karnebeek, Jan M. Friedman, Shelin Adam, Christèle du Souich, Alison M. Elliott, Anna Lehman, Jill Mwenifumbo, Tanya N. Nelson, Clara van Karnebeek, Jan M. Friedman, Chenkai Li, Arezoo Mohajeri, Egor Dolzhenko, Michael A. Eberle, İnanç Birol, Jan M. Friedman

    Udgivet 2021
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