檢索結果 - Dmitry Meleshko

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  1. 1
    metaSPAdes: a new versatile de novo metagenomics assembler

    metaSPAdes: a new versatile de novo metagenomics assembler 由 Sergey Nurk, Dmitry Meleshko, Anton Korobeynikov, Pavel A. Pevzner

    出版 2016
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  2. 2
    metaSPAdes: a new versatile metagenomic assembler

    metaSPAdes: a new versatile metagenomic assembler 由 Sergey Nurk, Dmitry Meleshko, Anton Korobeynikov, Pavel A. Pevzner

    出版 2017
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  3. 3
    Cue: a deep-learning framework for structural variant discovery and genotyping

    Cue: a deep-learning framework for structural variant discovery and genotyping 由 Victoria Popic, Chris Rohlicek, Fabio Cunial, Iman Hajirasouliha, Dmitry Meleshko, Kiran Garimella, Anant Maheshwari

    出版 2023
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  4. 4
    BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

    BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs 由 Dmitry Meleshko, Hosein Mohimani, Vittorio Tracanna, Iman Hajirasouliha, Marnix H. Medema, Anton Korobeynikov, Pavel A. Pevzner

    出版 2019
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  5. 5
    A Deep Learning Approach to Diagnostic Classification of Prostate Cancer Using Pathology–Radiology Fusion

    A Deep Learning Approach to Diagnostic Classification of Prostate Cancer Using Pathology–Radiology Fusion 由 Pegah Khosravi, Maria Lysandrou, Mahmoud Eljalby, Qianzi Li, Ehsan Kazemi, Pantelis Zisimopoulos, Alexandros Sigaras, Matthew Brendel, J. Wesley Barnes, Camir Ricketts, Dmitry Meleshko, Andy Yat, Timothy McClure, Brian D. Robinson, Andrea Sboner, Olivier Elemento, Bilal Chughtai, Iman Hajirasouliha

    出版 2021
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  6. 6
    Host, Viral, and Environmental Transcriptome Profiles of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)

    Host, Viral, and Environmental Transcriptome Profiles of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) 由 Daniel Butler, Christopher Mozsary, Cem Meydan, David Danko, Jonathan Foox, Joel Rosiene, Alon Shaiber, Ebrahim Afshinnekoo, Matthew MacKay, Fritz J. Sedlazeck, Nikolay A. Ivanov, Maria A. Sierra, Diana Pohle, Michael Zietz, Undina Gisladottir, Vijendra Ramlall, Craig Westover, Krista Ryon, Benjamin Young, Chandrima Bhattacharya, Phyllis Ruggiero, Bradley W. Langhorst, Nathan A. Tanner, Justyna Gawrys, Dmitry Meleshko, Dong Xu, Peter A.D. Steel, Amos Shemesh, Jenny Xiang, Jean Thierry‐Mieg, Danielle Thierry‐Mieg, Robert E. Schwartz, Angelika Iftner, Daniela Bezdan, John Sipley, Lin William Cong, Arryn Craney, Priya Velu, Ari Melnick, Iman Hajirasouliha, Stacy M. Horner, Thomas Iftner, Mirella Salvatore, Massimo Loda, Lars F. Westblade, Shawn Levy, Melissa M. Cushing, Shixiu Wu, Nicholas P. Tatonetti, Marcin Imieliński, Hanna Rennert, Christopher E. Mason

    出版 2020
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  7. 7
    Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

    Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions 由 Daniel Butler, Christopher Mozsary, Cem Meydan, David Danko, Jonathan Foox, Joel Rosiene, Alon Shaiber, Ebrahim Afshinnekoo, Matthew MacKay, Fritz J. Sedlazeck, Nikolay A. Ivanov, Maria A. Sierra, Diana Pohle, Michael Zietz, Undina Gisladottir, Vijendra Ramlall, Craig Westover, Krista Ryon, Benjamin Young, Chandrima Bhattacharya, Phyllis Ruggiero, Bradley W. Langhorst, Nathan A. Tanner, Justyna Gawrys, Dmitry Meleshko, Dong Xu, Peter A.D. Steel, Amos Shemesh, Jenny Xiang, Jean Thierry‐Mieg, Danielle Thierry‐Mieg, Robert E. Schwartz, Angelika Iftner, Daniela Bezdan, John Sipley, Lin William Cong, Arryn Craney, Priya Velu, Ari Melnick, Iman Hajirasouliha, Stacy M. Horner, Thomas Iftner, Mirella Salvatore, Massimo Loda, Lars F. Westblade, Melissa M. Cushing, Shawn Levy, Shixiu Wu, Nicholas P. Tatonetti, Marcin Imieliński, Hanna Rennert, Christopher E. Mason

    出版 2020
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  8. 8
    American Gut: an Open Platform for Citizen-Science Microbiome Research

    American Gut: an Open Platform for Citizen-Science Microbiome Research 由 Daniel McDonalda, Embriette R. Hyde, Justine W. Debelius, James T. Morton, Antonio González, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kościółek, Joshua Ladau, Jeff D. Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, José A. Navas-Molina, Tanya T. Nguyen, Shyamal D. Peddada, Pavel A. Pevzner, Katherine S. Pollard, Ali Rahnavard, Adam Robbins‐Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke Thompson, Anupriya Tripathi, Yoshiki Vázquez‐Baeza, Alison Vrbanac, Paul E. Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight

    出版 2018
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  9. 9
    Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

    Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions 由 Daniel Butler, Christopher Mozsary, Cem Meydan, Jonathan Foox, Joel Rosiene, Alon Shaiber, David Danko, Ebrahim Afshinnekoo, Matthew MacKay, Fritz J. Sedlazeck, Nikolay A. Ivanov, Maria A. Sierra, Diana Pohle, Michael Zietz, Undina Gisladottir, Vijendra Ramlall, Evan Sholle, Edward J. Schenck, Craig Westover, Ciaran Hassan, Krista Ryon, Benjamin Young, Chandrima Bhattacharya, Dianna L. Ng, Andrea Granados, Yale A. Santos, Venice Servellita, Scot Federman, Phyllis Ruggiero, Arkarachai Fungtammasan, Chen-Shan Chin, Nathaniel M. Pearson, Bradley W. Langhorst, Nathan A. Tanner, Young Mi Kim, Jason Reeves, Tyler Hether, Sarah Warren, Michael Bailey, Justyna Gawrys, Dmitry Meleshko, Dong Xu, Mara Couto-Rodriguez, Dorottya Nagy-Szakál, Joseph Barrows, Heather Wells, Niamh B. O’Hara, Jeffrey Rosenfeld, Ying Chen, Peter A.D. Steel, Amos Shemesh, Jenny Xiang, Jean Thierry‐Mieg, Danielle Thierry‐Mieg, Angelika Iftner, Daniela Bezdan, Elizabeth Sánchez, Thomas R. Campion, John Sipley, Lin William Cong, Arryn Craney, Priya Velu, Ari Melnick, Sagi Shapira, Iman Hajirasouliha, Alain Borczuk, Thomas Iftner, Mirella Salvatore, Massimo Loda, Lars F. Westblade, Melissa M. Cushing, Shixiu Wu, Shawn Levy, Charles Y. Chiu, Robert E. Schwartz, Nicholas P. Tatonetti, Hanna Rennert, Marcin Imieliński, Christopher E. Mason

    出版 2021
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  10. 10
    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Critical Assessment of Metagenome Interpretation: the second round of challenges 由 Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline Brito, C. Titus Brown, Jan P. Buchmann, Aydın Buluç, Bo Chen, Rayan Chikhi, Philip T. L. C. Clausen, Alexandru Cristian, Piotr Wojciech Dąbrowski, Aaron E. Darling, Rob Egan, Eleazar Eskin, Evangelos Georganas, Eugene Goltsman, Melissa A. Gray, Lars Hestbjerg Hansen, Steven Hofmeyr, Pingqin Huang, Luiz Irber, Huijue Jia, Tue Sparholt Jørgensen, Silas Kieser, Terje Klemetsen, Axel Kola, Mikhail Kolmogorov, Anton Korobeynikov, Jason C. Kwan, Nathan LaPierre, Claire Lemaitre, Chenhao Li, Antoine Limasset, Fábio Malcher Miranda, Serghei Mangul, Vanessa R. Marcelino, Camille Marchet, Pierre Marijon, Dmitry Meleshko, Daniel R. Mende, Alessio Milanese, Niranjan Nagarajan, Jakob Nybo Nissen, Sergey Nurk, Leonid Oliker, Lucas Paoli, Pierre Peterlongo, Vitor C. Piro, Jacob S. Porter, Simon Rasmussen, Evan Rees, Knut Reinert, Bernhard Y. Renard, Espen Mikal Robertsen, Gail Rosen, Hans‐Joachim Ruscheweyh, Varuni Sarwal, Nicola Segata, Enrico Seiler, Lizhen Shi, Fengzhu Sun, Shinichi Sunagawa, Søren J. Sørensen, Ashleigh Thomas, Chengxuan Tong, Mirko Trajkovski, Julien Tremblay, Gherman Uritskiy, Riccardo Vicedomini, Zhengyang Wang, Ziye Wang, Zhong Wang, Andrew Warren, Nils Peder Willassen, Katherine Yelick, Ronghui You, Georg Zeller, Zhengqiao Zhao, Shanfeng Zhu, Jie Zhu, Rubén Garrido‐Oter, Petra Gastmeier, Stéphane Hacquard, Susanne Häußler, Ariane Khaledi, Friederike Maechler, Fantin Mesny, Simona Radutoiu, Paul Schulze‐Lefert, Nathiana Smit, Till Strowig

    出版 2022
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  11. 11
    American Gut: an Open Platform for Citizen Science Microbiome Research

    American Gut: an Open Platform for Citizen Science Microbiome Research 由 Daniel McDonald, Embriette R. Hyde, Justine W. Debelius, James T. Morton, Antonio González-Torres, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kościółek, Joshua Ladau, Jeff D. Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, José A. Navas-Molina, Tanya T. Nguyen, Shyamal D. Peddada, Pavel A. Pevzner, Katherine S. Pollard, Ali Rahnavard, Adam Robbins‐Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke Thompson, Anupriya Tripathi, Yoshiki Vázquez‐Baeza, Alison Vrbanac, Paul E. Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight, Allison E. Mann, Amnon Amir, Angel Frazier, Cameron Martino, Carlito B. Lebrilla, Catherine Lozupone, Cecil M. Lewis, Charles L. Raison, Chi Zhang, Christian L. Lauber, Christina Warinner, Christopher A. Lowry, Chris Callewaert, Cinnamon S. Bloss, Dana Willner, Daniela Domingos Galzerani, David J. Gonzalez, David A. Mills, Deepak Chopra, Dirk Gevers, Donna Berg-Lyons, Dorothy D. Sears, Doug Wendel, Elijah Lovelace, Emily C. Pierce, Emily TerAvest, Evan Bolyen, Frederic D. Bushman, Gary D. Wu, George M. Church, Gordon Saxe, Hanna D. Holscher, Ivo Ugrina, J German, J. Gregory Caporaso, Jacob M. Wozniak, Jacqueline Kerr, Jacques Ravel, James D. Lewis, Jan S. Suchodolski, Janet Jansson, Jarrad Hampton‐Marcell

    出版 2018
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  12. 12
    Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

    Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment 由 Kern Rei Chng, Chenhao Li, Denis Bertrand, Amanda Hui Qi Ng, Junmei Samantha Kwah, Hwee Meng Low, Chengxuan Tong, Maanasa Natrajan, Michael Hongjie Zhang, Licheng Xu, Karrie Kwan Ki Ko, Eliza Xin Pei Ho, Tamar V. Av‐Shalom, Jeanette Teo, Chiea Chuen Khor, David Danko, Daniela Bezdan, Ebrahim Afshinnekoo, Sofia Ahsanuddin, Chandrima Bhattacharya, Daniel Butler, Kern Rei Chng, Francesca De Filippis, Jochen Hecht, André Kahles, Mikhail Karasikov, Nikos C. Kyrpides, Marcus H. Y. Leung, Dmitry Meleshko, Harun Mustafa, Beth Mutai, Russell Y. Neches, Amanda Hui Qi Ng, Marina Nieto‐Caballero, Olga Nikolayeva, Tatyana Nikolayeva, Eileen Png, Jorge L. Sánchez, Heba Shaaban, Maria A. Sierra, Xinzhao Tong, Ben Young, Josue Alicea, Malay Bhattacharyya, Ran Blekhman, Eduardo Castro‐Nallar, A Cañas, Aspassia D. Chatziefthimiou, Robert W. Crawford, Youping Deng, Christelle Desnues, Emmanuel Dias‐Neto, Daisy Donnellan, Marius Dybwad, Eran Elhaik, Danilo Ercolini, Alina Frolova, Alexandra Gráf, David C. Green, Iman Hajirasouliha, Mark Hernandez, Gregorio Iraola, Soojin Jang, Angela Jones, Frank J. Kelly, Kaymisha Knights, Paweł P. Łabaj, Patrick K. H. Lee, Levy Shawn, Per O. Ljungdahl, Abigail Lyons, Gabriella Mason-Buck, Ken McGrath, Emmanuel F. Mongodin, Milton Ozório Moraes, Niranjan Nagarajan, Houtan Noushmehr, Manuela Oliveira, Stephan Ossowski, Olayinka Osuolale, Orhan Özcan, David Páez-Espino, Nicolás Rascovan, Hugues Richard, Gunnar Rätsch, Lynn M. Schriml, Torsten Semmler, Uğur Sezerman, Leming Shi, Le Huu Song, Haruo Suzuki, Denise Syndercombe Court, Dominique Thomas, Scott Tighe, Klas I. Udekwu, Juan A. Ugalde, Brandon Valentine, Dimitar Vassilev, Elena Vayndorf, Thirumalaisamy P. Velavan

    出版 2020
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  13. 13
    A global metagenomic map of urban microbiomes and antimicrobial resistance

    A global metagenomic map of urban microbiomes and antimicrobial resistance 由 David Danko, Daniela Bezdan, Evan E. Afshin, Sofia Ahsanuddin, Chandrima Bhattacharya, Daniel Butler, Kern Rei Chng, Daisy Donnellan, Jochen Hecht, Katelyn Jackson, Katerina Kuchin, Mikhail Karasikov, Abigail Lyons, Lauren Mak, Dmitry Meleshko, Harun Mustafa, Beth Mutai, Russell Y. Neches, Amanda Hui Qi Ng, Olga Nikolayeva, Tatyana Nikolayeva, Eileen Png, Krista Ryon, Jorge L. Sánchez, Heba Shaaban, Maria A. Sierra, Dominique Thomas, Ben Young, Omar O. Abudayyeh, Josue Alicea, Malay Bhattacharyya, Ran Blekhman, Eduardo Castro‐Nallar, A Cañas, Aspassia D. Chatziefthimiou, Robert W. Crawford, Francesca De Filippis, Youping Deng, Christelle Desnues, Emmanuel Dias‐Neto, Marius Dybwad, Eran Elhaik, Danilo Ercolini, Alina Frolova, Dennis Gankin, Jonathan S. Gootenberg, Alexandra Gráf, David C. Green, Iman Hajirasouliha, Jaden J. A. Hastings, Mark Hernandez, Gregorio Iraola, Soojin Jang, André Kahles, Frank J. Kelly, Kaymisha Knights, Nikos C. Kyrpides, Paweł P. Łabaj, Patrick K. H. Lee, Marcus H. Y. Leung, Per O. Ljungdahl, Gabriella Mason-Buck, Ken McGrath, Cem Meydan, Emmanuel F. Mongodin, Milton Ozório Moraes, Niranjan Nagarajan, Marina Nieto‐Caballero, Houtan Noushmehr, Manuela Oliveira, Stephan Ossowski, Olayinka Osuolale, Orhan Özcan, David Páez-Espino, Nicolás Rascovan, Hugues Richard, Gunnar Rätsch, Lynn M. Schriml, Torsten Semmler, Uğur Sezerman, Leming Shi, Tieliu Shi, Rania Siam, Le Huu Song, Haruo Suzuki, Denise Syndercombe Court, Scott Tighe, Xinzhao Tong, Klas I. Udekwu, Juan A. Ugalde, Brandon Valentine, Dimitar Vassilev, Elena Vayndorf, Thirumalaisamy P. Velavan, Jun Wu, María Mercedes Zambrano, Jifeng Zhu, Sibo Zhu, Christopher E. Mason, Nurul Akmaryanti Abdullah

    出版 2021
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