Ohcanbohtosat - Diekhans, Mark

Regions of extreme synonymous codon selection in mammalian genes Dahkki Schattner, Peter, Diekhans, Mark

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Whole-Genome Alignment and Comparative Annotation Dahkki Armstrong, Joel, Fiddes, Ian T., Diekhans, Mark, Paten, Benedict

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LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures Dahkki Ryan, Michael, Diekhans, Mark, Lien, Stephanie, Liu, Yun, Karchin, Rachel

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Retrocopy contributions to the evolution of the human genome Dahkki Baertsch, Robert, Diekhans, Mark, Kent, W James, Haussler, David, Brosius, Jürgen

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Cactus: Algorithms for genome multiple sequence alignment Dahkki Paten, Benedict, Earl, Dent, Nguyen, Ngan, Diekhans, Mark, Zerbino, Daniel, Haussler, David

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halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments Dahkki Krasheninnikova, Ksenia, Diekhans, Mark, Armstrong, Joel, Dievskii, Aleksei, Paten, Benedict, O’Brien, Stephen

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CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer Dahkki Wong, Wing Chung, Kim, Dewey, Carter, Hannah, Diekhans, Mark, Ryan, Michael C., Karchin, Rachel

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Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage Dahkki Zhu, Jingchun, Sanborn, J. Zachary, Diekhans, Mark, Lowe, Craig B, Pringle, Tom H, Haussler, David

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Cactus Graphs for Genome Comparisons Dahkki Paten, Benedict, Diekhans, Mark, Earl, Dent, John, John St., Ma, Jian, Suh, Bernard, Haussler, David

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The UCSC Cancer Genomics Browser: update 2015 Dahkki Goldman, Mary, Craft, Brian, Swatloski, Teresa, Cline, Melissa, Morozova, Olena, Diekhans, Mark, Haussler, David, Zhu, Jingchun

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The UCSC Proteome Browser Dahkki Hsu, Fan, Pringle, Tom H., Kuhn, Robert M., Karolchik, Donna, Diekhans, Mark, Haussler, David, Kent, W. James

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MuPIT Interactive: Webserver for mapping variant positions to annotated, interactive 3D structures Dahkki Niknafs, Noushin, Kim, Dewey, Kim, Ryang Guk, Diekhans, Mark, Ryan, Michael, Stenson, Peter D., Cooper, David N., Karchin, Rachel

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CRAVAT: cancer-related analysis of variants toolkit Dahkki Douville, Christopher, Carter, Hannah, Kim, Rick, Niknafs, Noushin, Diekhans, Mark, Stenson, Peter D., Cooper, David N., Ryan, Michael, Karchin, Rachel

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Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes Dahkki Ezkurdia, Iakes, Juan, David, Rodriguez, Jose Manuel, Frankish, Adam, Diekhans, Mark, Harrow, Jennifer, Vazquez, Jesus, Valencia, Alfonso, Tress, Michael L.

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Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells Dahkki Tunstall, Tate, Kock, Richard, Vahala, Jiri, Diekhans, Mark, Fiddes, Ian, Armstrong, Joel, Paten, Benedict, Ryder, Oliver A., Steiner, Cynthia C.

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The UCSC Cancer Genomics Browser: update 2013 Dahkki Goldman, Mary, Craft, Brian, Swatloski, Teresa, Ellrott, Kyle, Cline, Melissa, Diekhans, Mark, Ma, Singer, Wilks, Chris, Stuart, Josh, Haussler, David, Zhu, Jingchun

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Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing Dahkki Furey, Terrence S., Diekhans, Mark, Lu, Yontao, Graves, Tina A., Oddy, Lachlan, Randall-Maher, Jennifer, Hillier, LaDeana W., Wilson, Richard K., Haussler, David

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Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing Dahkki Mulroney, Logan, Wulf, Madalee G., Schildkraut, Ira, Tzertzinis, George, Buswell, John, Jain, Miten, Olsen, Hugh, Diekhans, Mark, Corrêa, Ivan R., Akeson, Mark, Ettwiller, Laurence

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Transcriptional activity and strain-specific history of mouse pseudogenes Dahkki Sisu, Cristina, Muir, Paul, Frankish, Adam, Fiddes, Ian, Diekhans, Mark, Thybert, David, Odom, Duncan T., Flicek, Paul, Keane, Thomas M., Hubbard, Tim, Harrow, Jennifer, Gerstein, Mark

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Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation Dahkki Fiddes, Ian T., Armstrong, Joel, Diekhans, Mark, Nachtweide, Stefanie, Kronenberg, Zev N., Underwood, Jason G., Gordon, David, Earl, Dent, Keane, Thomas, Eichler, Evan E., Haussler, David, Stanke, Mario, Paten, Benedict

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