Rezultati - Diane Trout

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  1. 1
    Mining gene expression data by interpreting principal components

    Mining gene expression data by interpreting principal components od J. Roden, Brandon W King, Diane Trout, A Mortazavi, B Wold, Christopher Hart

    Izdano 2006
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  2. 2
    Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq

    Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq od Elisabeth Rebboah, Fairlie Reese, Katherine Williams, Gabriela Balderrama-Gutierrez, Cassandra McGill, Diane Trout, Isaryhia Rodriguez, Heidi Yahan Liang, B Wold, A Mortazavi

    Izdano 2021
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  3. 3
    A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification

    A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification od Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Shan Jiang, Sorena Rahmanian, Stefânia Forner, Dina P. Matheos, Weihua Zeng, Brian A. Williams, Diane Trout, Whitney England, Shu‐Hui Chu, Robert C. Spitale, Andrea J. Tenner, B Wold, A Mortazavi

    Izdano 2019
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  4. 4
    The changing mouse embryo transcriptome at whole tissue and single-cell resolution

    The changing mouse embryo transcriptome at whole tissue and single-cell resolution od Peng He, Brian A. Williams, Diane Trout, Georgi K. Marinov, Henry Amrhein, Libera Berghella, Say-Tar Goh, Ingrid Plajzer-Frick, Veena Afzal, L Pennacchio, Diane E. Dickel, Axel Visel, Bing Ren, Ross C. Hardison, Yu Zhang, B Wold

    Izdano 2020
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  5. 5
    Spatiotemporal DNA methylome dynamics of the developing mouse fetus

    Spatiotemporal DNA methylome dynamics of the developing mouse fetus od Yupeng He, Manoj Hariharan, David U. Gorkin, Diane E. Dickel, Chongyuan Luo, Rosa Castanon, Joseph R. Nery, Ah Young Lee, Yuan Zhao, Hui Huang, Brian A. Williams, Diane Trout, Henry Amrhein, Rongxin Fang, Huaming Chen, Bin Li, Axel Visel, L Pennacchio, Bing Ren, Joseph R. Ecker

    Izdano 2020
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  6. 6
    An atlas of dynamic chromatin landscapes in mouse fetal development

    An atlas of dynamic chromatin landscapes in mouse fetal development od David U. Gorkin, Iros Barozzi, Yuan Zhao, Yanxiao Zhang, Hui Huang, Ah Young Lee, Bin Li, Joshua Chiou, André Wildberg, Bo Ding, Bo Zhang, Mengchi Wang, J. Seth Strattan, Jean M. Davidson, Yunjiang Qiu, Veena Afzal, Jennifer A. Akiyama, Ingrid Plajzer-Frick, Catherine S. Novak, Momoe Kato, Tyler H. Garvin, Quan Pham, Anne Harrington, Brandon J. Mannion, Elizabeth A. Lee, Y. Fukuda, Yupeng He, Sebastian Preißl, Sora Chee, Jee Yun Han, Brian A. Williams, Diane Trout, Henry Amrhein, Hongbo Yang, J. Michael Cherry, Wei Wang, Kyle J. Gaulton, Joseph R. Ecker, Yin Shen, Diane E. Dickel, Axel Visel, L Pennacchio, Bing Ren

    Izdano 2020
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  7. 7
    The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity

    The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity od Fairlie Reese, Brian A. Williams, Gabriela Balderrama-Gutierrez, Dana Wyman, Muhammed Hasan Çelik, Elisabeth Rebboah, Narges Rezaie, Diane Trout, Milad Razavi-Mohseni, Yunzhe Jiang, Beatrice Borsari, Samuel Morabito, Heidi Yahan Liang, Cassandra McGill, Sorena Rahmanian, Jasmine Sakr, Shan Jiang, Weihua Zeng, Klébea Carvalho, Annika K. Weimer, Louise A. Dionne, Ariel McShane, Karan Bedi, Shaimae I. Elhajjajy, Sean Upchurch, Jennifer Jou, Ingrid Youngworth, Idan Gabdank, Paul Sud, Otto Jolanki, J. Seth Strattan, Meenakshi S. Kagda, M Snyder, Ben C. Hitz, Jill E. Moore, Zhiping Weng, David A. Bennett, Laura G. Reinholdt, Mats Ljungman, M Beer, Mark Gerstein, Lior Pachter, Roderic Guigó, B Wold, A Mortazavi

    Izdano 2023
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  8. 8
    The ENCODE Uniform Analysis Pipelines

    The ENCODE Uniform Analysis Pipelines od Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J. Seth Strattan, Cricket A. Sloan, Timothy R. Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, Marcus Ho, Stuart R. Miyasato, Matt Simison, Forrest Y. Tanaka, Yunhai Luo, Ian Whaling, Eurie L. Hong, Brian T. Lee, Richard Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel Sunwook Kim, Nathan Boley, Diane Trout, Alexander Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C. Durand, Olga Dudchenko, David Weisz, Suhas S.P. Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan D. Bochkov, Muhammad S. Shamim, Ragini Mahajan, Erez Lieberman Aiden, T Gingeras, Simon Heath, Martin Hirst, W. James Kent, Anshul Kundaje, A Mortazavi, B Wold, J. Michael Cherry

    Izdano 2023
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  9. 9
    The ENCODE Uniform Analysis Pipelines

    The ENCODE Uniform Analysis Pipelines od Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J. Seth Strattan, Cricket A. Sloan, Timothy R. Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, Marcus Ho, Stuart R. Miyasato, Matt Simison, Forrest Y. Tanaka, Yunhai Luo, Ian Wahling, Khine Lin, Jennifer Jou, Eurie L. Hong, Brian T. Lee, Richard Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel S. Kim, Nathan Boley, Diane Trout, Alexander Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C. Durand, Olga Dudchenko, David Weisz, Suhas S.P. Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan D. Bochkov, Muhammad S. Shamim, Ragini Mahajan, Erez Lieberman Aiden, T Gingeras, Simon Heath, Martin Hirst, W. James Kent, Anshul Kundaje, A Mortazavi, B Wold, J. Michael Cherry

    Izdano 2023
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  10. 10
    Landscape of transcription in human cells

    Landscape of transcription in human cells od Sarah Djebali, Carrie Davis, Angelika Merkel, Alexander Dobin, Timo Lassmann, A Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger, Chenghai Xue, Georgi K. Marinov, Jainab Khatun, Brian A. Williams, Chris Zaleski, Joel Rozowsky, Maik Röder, Felix Kokocinski, Rehab Abdelhamid, Tyler Alioto, Igor Antoshechkin, Michael T. Baer, Nadav Bar, Philippe Batut, Kimberly Bell, Ian Bell, Sudipto K. Chakrabortty, Xian Chen, Jacqueline Chrast, João Curado, Thomas Derrien, Jörg Drenkow, Erica Dumais, Jacqueline Dumais, Radha Duttagupta, Emilie Falconnet, Meagan Fastuca, Kata Fejes-Toth, Pedro G. Ferreira, Sylvain Foissac, Melissa J. Fullwood, Hui Gao, David González, Assaf Gordon, Harsha P. Gunawardena, Cédric Howald, Sonali Jha, Rory Johnson, Philipp Kapranov, Brandon King, Colin Kingswood, Oscar Junhong Luo, Eddie Park, Kimberly Persaud, Jonathan Preall, Paolo Ribeca, Brian A. Risk, Daniel Robyr, Michael Sammeth, Lorian Schaffer, Lei-Hoon See, Atif Shahab, Jørgen Skancke, Ana Maria Suzuki, Hazuki Takahashi, Hagen Tilgner, Diane Trout, Nathalie Walters, Huaien Wang, John A. Wrobel, Yanbao Yu, Xiaoan Ruan, Yoshihide Hayashizaki, Jennifer Harrow, Mark Gerstein, Tim Hubbard, Alexandre Reymond, Stylianos E. Antonarakis, Gregory J. Hannon, Morgan C. Giddings, Yijun Ruan, B Wold, Piero Carninci, Roderic Guigó, T Gingeras

    Izdano 2012
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  11. 11
    An encyclopedia of mouse DNA elements (Mouse ENCODE)

    An encyclopedia of mouse DNA elements (Mouse ENCODE) od J Stamatoyannopoulos, M Snyder, Ross C. Hardison, Bing Ren, T Gingeras, David M. Gilbert, Mark Groudine, M. A. Bender, Rajinder Kaul, Theresa Canfield, Erica Giste, Audra Johnson, Zhang Mia, Gayathri Balasundaram, Rachel Byron, Vaughan Roach, Peter J. Sabo, Richard Sandstrom, A Sandra Stehling, Robert E. Thurman, Sherman M. Weissman, Philip Cayting, Manoj Hariharan, Lian Jin, Yong Cheng, Stephen G. Landt, Zhihai Ma, B Wold, Job Dekker, Gregory E. Crawford, Cheryl A. Keller, Wei-Sheng Wu, Christopher A. Morrissey, Swathi A. Kumar, Tejaswini Mishra, Deepti Jain, Marta Byrska-Bishop, Daniel Blankenberg, Bryan R. Lajoie, Gaurav Jain, Amartya Sanyal, Kaun-Bei Chen, Olgert Denas, James Taylor, Gerd A. Blobel, Mitchell J. Weiss, Max Pimkin, Wulan Deng, Georgi K. Marinov, Brian A. Williams, Katherine Fisher-Aylor, Gilberto DeSalvo, Anthony Kiralusha, Diane Trout, Henry Amrhein, A Mortazavi, Lee Edsall, David McCleary, Samantha Kuan, Yin Shen, Feng Yue, Zhen Ye, Carrie Davis, Chris Zaleski, Sonali Jha, Chenghai Xue, Alexander Dobin, Wei Lin, Meagan Fastuca, Huaien Wang, Roderic Guigó, Sarah Djebali, Julien Lagarde, Tyrone Ryba, Takayo Sasaki, Venkat S. Malladi, Melissa Cline, Vanessa M. Kirkup, Katrina Learned, Kate R. Rosenbloom, W. James Kent, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Rebecca F. Lowdon, Leslie B. Adams

    Izdano 2012
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  12. 12
    A comparative encyclopedia of DNA elements in the mouse genome

    A comparative encyclopedia of DNA elements in the mouse genome od Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Wei-Sheng Wu, Tyrone Ryba, Richard Sandstrom, Zhihai Ma, Carrie Davis, Benjamin D. Pope, Yin Shen, Dmitri D. Pervouchine, Sarah Djebali, Robert E. Thurman, Rajinder Kaul, Eric Rynes, Anthony Kirilusha, Georgi K. Marinov, Brian A. Williams, Diane Trout, Henry Amrhein, Katherine Fisher-Aylor, Igor Antoshechkin, Gilberto DeSalvo, Lei-Hoon See, Meagan Fastuca, Jörg Drenkow, Chris Zaleski, Alexander Dobin, Pablo Prieto, Julien Lagarde, Giovanni Bussotti, Andrea Tanzer, Olgert Denas, Kanwei Li, M. A. Bender, Miaohua Zhang, Rachel Byron, Mark Groudine, David McCleary, Long Pham, Zhen Ye, Samantha Kuan, Lee Edsall, Yi-Chieh Wu, Matthew D. Rasmussen, Mukul S. Bansal, Manolis Kellis, Cheryl A. Keller, Christapher S. Morrissey, Tejaswini Mishra, Deepti Jain, Nergiz Doğan, Robert S. Harris, Philip Cayting, Trupti Kawli, Alan P. Boyle, Ghia Euskirchen, Anshul Kundaje, Shin Lin, Yiing Lin, Camden Jansen, Venkat S. Malladi, Melissa Cline, Drew T. Erickson, Vanessa M. Kirkup, Katrina Learned, Cricket A. Sloan, Kate R. Rosenbloom, Beatriz Lacerda de Sousa, Kathryn Beal, Miguel Pignatelli, Paul Flicek, Lian Jin, Tamer Kahveci, Dongwon Lee, W. James Kent, Miguel Ramalho Santos, Javier Herrero, Cédric Notredame, Audra Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio Neri, Morgan Diegel, Theresa K. Canfield, Peter J. Sabo, Matthew S. Wilken, Thomas A. Reh, Erika Giste, Anthony Shafer, Tanya Kutyavin, Eric Haugen, Douglas Dunn, Alex Reynolds, Shane Neph, Richard Humbert, R. Scott Hansen, Marella de Bruijn

    Izdano 2014
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