Výsledky vyhledávání - Dent Earl

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  1. 1
    HAL: a hierarchical format for storing and analyzing multiple genome alignments

    HAL: a hierarchical format for storing and analyzing multiple genome alignments Autor Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler

    Vydáno 2013
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  2. 2
    Cactus: Algorithms for genome multiple sequence alignment

    Cactus: Algorithms for genome multiple sequence alignment Autor Benedict Paten, Dent Earl, Ngan Nguyen, Mark Diekhans, Daniel R. Zerbino, David Haussler

    Vydáno 2011
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  3. 3
    Cactus Graphs for Genome Comparisons

    Cactus Graphs for Genome Comparisons Autor Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, David Haussler

    Vydáno 2011
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  4. 4
    Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

    Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM Autor Charles Vaske, Stephen C. Benz, Zack Sanborn, Dent Earl, Christopher Szeto, Jingchun Zhu, David Haussler, Joshua M. Stuart

    Vydáno 2010
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  5. 5
    Building a Pan-Genome Reference for a Population

    Building a Pan-Genome Reference for a Population Autor Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten

    Vydáno 2015
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  6. 6
    Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

    Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation Autor Ian T. Fiddes, Joel Armstrong, Mark Diekhans, Stefanie Nachtweide, Zev Kronenberg, Jason G. Underwood, David Gordon, Dent Earl, Thomas Keane, Evan E. Eichler, David Haussler, Mario Stanke, Benedict Paten

    Vydáno 2018
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  7. 7
    Alignathon: a competitive assessment of whole-genome alignment methods

    Alignathon: a competitive assessment of whole-genome alignment methods Autor Dent Earl, Ngan Nguyen, Glenn Hickey, Robert S. Harris, Stephen Fitzgerald, Kathryn Beal, Igor Seledtsov, В. В. Молодцов, Brian J. Raney, Hiram Clawson, Jaebum Kim, Carsten Kemena, Jia‐Ming Chang, Ionas Erb, Alexander Poliakov, Minmei Hou, Javier Herrero, William Kent, Victor Solovyev, Aaron E. Darling, Jian Ma, Cédric Notredame, Michael Brudno, Inna Dubchak, David Haussler, Benedict Paten

    Vydáno 2014
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  8. 8
    Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

    Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication Autor Bridgett M. vonHoldt, John P. Pollinger, Kirk E. Lohmueller, Eunjung Han, Heidi G. Parker, Pascale Quignon, Jeremiah D. Degenhardt, Adam R. Boyko, Dent Earl, Adam Auton, Andy Reynolds, Kasia Bryc, Abra Brisbin, Jonathan C. Knowles, Dana S. Mosher, Tyrone C. Spady, Abdel Elkahloun, Eli Geffen, Małgorzata Pilot, Włodzimierz Jędrzejewski, Claudia Greco, Ettore Randi, Danika L. Bannasch, Alan N. Wilton, Jeremy R. Shearman, Marco Musiani, Michelle Cargill, P.G. Jones, Zuwei Qian, Wei Huang, Zhao-Li Ding, Ya-Ping Zhang, Carlos D. Bustamante, Elaine A. Ostrander, John Novembre, Robert K. Wayne

    Vydáno 2010
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  9. 9
    Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci

    Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci Autor Jingtao Lilue, Anthony Doran, Ian T. Fiddes, Monica Abrudan, Joel Armstrong, Ruth Bennett, William Chow, Joanna Collins, Stephan C. Collins, Anne Czechanski, Petr Danecek, Mark Diekhans, Dirk-Dominik Dolle, Matt Dunn, Richard Durbin, Dent Earl, Anne C. Ferguson‐Smith, Paul Flicek, Jonathan Flint, Adam Frankish, Beiyuan Fu, Mark Gerstein, James Gilbert, Leo Goodstadt, Jennifer Harrow, Kerstin Howe, Ximena Ibarra-Soria, Mikhail Kolmogorov, Chris Lelliott, Darren W. Logan, Jane Loveland, Clayton E. Mathews, Richard Mott, Paul Muir, Stefanie Nachtweide, Fábio C. P. Navarro, Duncan T. Odom, Naomi Park, Sarah Pelan, Son Pham, Mike Quail, Laura G. Reinholdt, Lars Romoth, Lesley Shirley, Cristina Sisu, Marcela Sjöberg, Mario Stanke, Charles A. Steward, Mark Thomas, Glen Threadgold, David Thybert, James Torrance, Kim Wong, Jonathan Wood, Binnaz Yalcin, Fengtang Yang, David J. Adams, Benedict Paten, Thomas Keane

    Vydáno 2018
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  10. 10
    Assemblathon 1: A competitive assessment of de novo short read assembly methods

    Assemblathon 1: A competitive assessment of de novo short read assembly methods Autor Dent Earl, Keith Bradnam, John St. John, Aaron E. Darling, Dawei Lin, Joseph Fass, Hung On Ken Yu, Vince Buffalo, Daniel R. Zerbino, Mark Diekhans, Ngan Nguyen, Pramila Ariyaratne, Wing‐Kin Sung, Zemin Ning, Matthias Haimel, Jared T. Simpson, Nuno A. Fonseca, İnanç Birol, Roderick Docking, Isaac Ho, Daniel S. Rokhsar, Rayan Chikhi, Dominique Lavenier, Guillaume Chapuis, Delphine Naquin, Nicolas Maillet, Michael C. Schatz, David R. Kelley, Adam M. Phillippy, Sergey Koren, Shiaw‐Pyng Yang, Wei Wu, Wen‐Chi Chou, Anuj Srivastava, Timothy I. Shaw, J. Graham Ruby, Peter Skewes-Cox, Miguel Betegon, Michelle Dimon, Victor Solovyev, Igor Seledtsov, Petr Kosarev, Denis Vorobyev, Ricardo H. Ramírez-González, Richard M. Leggett, Dan MacLean, Fangfang Xia, Ruibang Luo, Zhenyu Li, Yinlong Xie, Binghang Liu, Sante Gnerre, Iain MacCallum, Dariusz Przybylski, Filipe J. Ribeiro, Shuangye Yin, Ted Sharpe, Giles Hall, Paul Kersey, Richard Durbin, Shaun D. Jackman, Jarrod Chapman, Xiaoqiu Huang, Joseph L. DeRisi, Mario Cáccamo, Yingrui Li, David B. Jaffe, Richard E. Green, David Haussler, Ian Korf, Benedict Paten

    Vydáno 2011
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  11. 11
    Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

    Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species Autor Keith Bradnam, Joseph Fass, Anton Alexandrov, Paul Baranay, Michael Bechner, İnanç Birol, Sébastien Boisvert, Jarrod Chapman, Guillaume Chapuis, Rayan Chikhi, Hamidreza Chitsaz, Wen‐Chi Chou, Jacques Corbeil, Cristian Del Fabbro, Roderick Docking, Richard Durbin, Dent Earl, Scott Emrich, Pavel Fedotov, Nuno A. Fonseca, Ganeshkumar Ganapathy, Richard A. Gibbs, Sante Gnerre, Élénie Godzaridis, Steve Goldstein, Matthias Haimel, Giles Hall, David Haussler, Joseph Hiatt, Isaac Ho, Jason T. Howard, Martin Hunt, Shaun D. Jackman, David B. Jaffe, Erich D. Jarvis, Huaiyang Jiang, С. В. Казаков, Paul Kersey, Jacob O. Kitzman, James Knight, Sergey Koren, Tak‐Wah Lam, Dominique Lavenier, François Laviolette, Yingrui Li, Zhenyu Li, Binghang Liu, Yue Liu, Ruibang Luo, Iain MacCallum, Matthew D. MacManes, Nicolas Maillet, Sergey Melnikov, Delphine Naquin, Zemin Ning, Thomas D. Otto, Benedict Paten, Octávio S. Paulo, Adam M. Phillippy, Francisco Pina‐Martins, Michael Place, Dariusz Przybylski, Xiang Qin, Carson Qu, Filipe J. Ribeiro, Stephen Richards, Daniel S. Rokhsar, J. Graham Ruby, Simone Scalabrin, Michael C. Schatz, David C. Schwartz, Alexey Sergushichev, Ted Sharpe, Timothy I. Shaw, Jay Shendure, Yujian Shi, Jared T. Simpson, Henry Song, Fedor Tsarev, Francesco Vezzi, Riccardo Vicedomini, Bruno Vieira, Jun Wang, Kim C. Worley, Shuangye Yin, Siu Ming Yiu, Jianying Yuan, Guojie Zhang, Hao Zhang, Shiguo Zhou, Ian Korf

    Vydáno 2013
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