Ngā hua rapu - Demichelis, Francesca

Ploidy‐ and Purity‐Adjusted Allele‐Specific DNA Analysis Using CLONETv2 mā Prandi, Davide, Demichelis, Francesca

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Therapy Considerations in Neuroendocrine Prostate Cancer: What Next? mā Beltran, Himisha, Demichelis, Francesca

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Past, Current, and Future Strategies to Target ERG Fusion-Positive Prostate Cancer mā Lorenzin, Francesca, Demichelis, Francesca

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TMPRSS2‐ETS fusion prostate cancer: biological and clinical implications mā Demichelis, Francesca, Rubin, Mark A

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The Genomics of Prostate Cancer: A Historic Perspective mā Rubin, Mark A., Demichelis, Francesca

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Tumor purity quantification by clonal DNA methylation signatures mā Benelli, Matteo, Romagnoli, Dario, Demichelis, Francesca

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Better screened than sorry!—an informed panel of inherited DNA repair gene variants for prostate cancer screening and prognostication mā Fracassi, Giulia, Lorenzin, Francesca, Demichelis, Francesca

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Molecular Archeology: Unearthing Androgen Induced Structural Rearrangements in Prostate Cancer Genomes mā Demichelis, Francesca, Garraway, Levi A., Rubin, Mark A.

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EthSEQ: ethnicity annotation from whole exome sequencing data mā Romanel, Alessandro, Zhang, Tuo, Elemento, Olivier, Demichelis, Francesca

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TPES: tumor purity estimation from SNVs mā Locallo, Alessio, Prandi, Davide, Fedrizzi, Tarcisio, Demichelis, Francesca

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PaCBAM: fast and scalable processing of whole exome and targeted sequencing data mā Valentini, Samuel, Fedrizzi, Tarcisio, Demichelis, Francesca, Romanel, Alessandro

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TMPRSS2-ERG Fusion Prostate Cancer Heterogeneity: Clinical and Biologic Implications mā Barry, Marc, Perner, Sven, Demichelis, Francesca, Rubin, Mark A.

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ASEQ: fast allele-specific studies from next-generation sequencing data mā Romanel, Alessandro, Lago, Sara, Prandi, Davide, Sboner, Andrea, Demichelis, Francesca

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A hierarchical Naïve Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays mā Demichelis, Francesca, Magni, Paolo, Piergiorgi, Paolo, Rubin, Mark A, Bellazzi, Riccardo

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Impact of constitutional copy number variants on biological pathway evolution mā Poptsova, Maria, Banerjee, Samprit, Gokcumen, Omer, Rubin, Mark A, Demichelis, Francesca

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Optimizing copy number variation analysis using genome-wide short sequence oligonucleotide arrays mā Oldridge, Derek A., Banerjee, Samprit, Setlur, Sunita R., Sboner, Andrea, Demichelis, Francesca

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Inherited variant in NFκB‐1 promoter is associated with increased risk of IBD in an Algerian population and modulates SOX9 binding mā Hamadou, Imene, Garritano, Sonia, Romanel, Alessandro, Naimi, Dalila, Hammada, Talel, Demichelis, Francesca

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Fast mutual exclusivity algorithm nominates potential synthetic lethal gene pairs through brute force matrix product computations mā Fedrizzi, Tarcisio, Ciani, Yari, Lorenzin, Francesca, Cantore, Thomas, Gasperini, Paola, Demichelis, Francesca

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A Computational Framework Discovers New Copy Number Variants with Functional Importance mā Banerjee, Samprit, Oldridge, Derek, Poptsova, Maria, Hussain, Wasay M., Chakravarty, Dimple, Demichelis, Francesca

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In silico identification and functional validation of allele-dependent AR enhancers mā Garritano, Sonia, Romanel, Alessandro, Ciribilli, Yari, Bisio, Alessandra, Gavoci, Antoneta, Inga, Alberto, Demichelis, Francesca

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