Search Results - Dehal, Paramvir

Two Rounds of Whole Genome Duplication in the Ancestral Vertebrate by Dehal, Paramvir, Boore, Jeffrey L

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A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database by Dehal, Paramvir S, Boore, Jeffrey L

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Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes by Price, Morgan N, Dehal, Paramvir S, Arkin, Adam P

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Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli by Price, Morgan N, Dehal, Paramvir S, Arkin, Adam P

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FastBLAST: Homology Relationships for Millions of Proteins by Price, Morgan N., Dehal, Paramvir S., Arkin, Adam P.

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FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix by Price, Morgan N., Dehal, Paramvir S., Arkin, Adam P.

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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments by Price, Morgan N., Dehal, Paramvir S., Arkin, Adam P.

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metaMicrobesOnline: phylogenomic analysis of microbial communities by Chivian, Dylan, Dehal, Paramvir S., Keller, Keith, Arkin, Adam P.

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Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium by Rajeev, Lara, Luning, Eric G, Dehal, Paramvir S, Price, Morgan N, Arkin, Adam P, Mukhopadhyay, Aindrila

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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics by Novichkov, Pavel S., Brettin, Thomas S., Novichkova, Elena S., Dehal, Paramvir S., Arkin, Adam P., Dubchak, Inna, Rodionov, Dmitry A.

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A universal TagModule collection for parallel genetic analysis of microorganisms by Oh, Julia, Fung, Eula, Price, Morgan N., Dehal, Paramvir S., Davis, Ronald W., Giaever, Guri, Nislow, Corey, Arkin, Adam P., Deutschbauer, Adam

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Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site by Chakraborty, Romy, Woo, Hannah, Dehal, Paramvir, Walker, Robert, Zemla, Marcin, Auer, Manfred, Goodwin, Lynne A., Kazakov, Alexey, Novichkov, Pavel, Arkin, Adam P., Hazen, Terry C.

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Snapshot of iron response in Shewanella oneidensis by gene network reconstruction by Yang, Yunfeng, Harris, Daniel P, Luo, Feng, Xiong, Wenlu, Joachimiak, Marcin, Wu, Liyou, Dehal, Paramvir, Jacobsen, Janet, Yang, Zamin, Palumbo, Anthony V, Arkin, Adam P, Zhou, Jizhong

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TreeFam: a curated database of phylogenetic trees of animal gene families by Li, Heng, Coghlan, Avril, Ruan, Jue, Coin, Lachlan James, Hériché, Jean-Karim, Osmotherly, Lara, Li, Ruiqiang, Liu, Tao, Zhang, Zhang, Bolund, Lars, Wong, Gane Ka-Shu, Zheng, Weimou, Dehal, Paramvir, Wang, Jun, Durbin, Richard

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MicrobesOnline: an integrated portal for comparative and functional genomics by Dehal, Paramvir S., Joachimiak, Marcin P., Price, Morgan N., Bates, John T., Baumohl, Jason K., Chivian, Dylan, Friedland, Greg D., Huang, Katherine H., Keller, Keith, Novichkov, Pavel S., Dubchak, Inna L., Alm, Eric J., Arkin, Adam P.

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Cell-Wide Responses to Low-Oxygen Exposure in Desulfovibrio vulgaris Hildenborough by Mukhopadhyay, Aindrila, Redding, Alyssa M., Joachimiak, Marcin P., Arkin, Adam P., Borglin, Sharon E., Dehal, Paramvir S., Chakraborty, Romy, Geller, Jil T., Hazen, Terry C., He, Qiang, Joyner, Dominique C., Martin, Vincent J. J., Wall, Judy D., Yang, Zamin Koo, Zhou, Jizhong, Keasling, Jay D.

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Mechanisms of Thermal Adaptation Revealed From the Genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii by Saunders, Neil F.W., Thomas, Torsten, Curmi, Paul M.G., Mattick, John S., Kuczek, Elizabeth, Slade, Rob, Davis, John, Franzmann, Peter D., Boone, David, Rusterholtz, Karl, Feldman, Robert, Gates, Chris, Bench, Shellie, Sowers, Kevin, Kadner, Kristen, Aerts, Andrea, Dehal, Paramvir, Detter, Chris, Glavina, Tijana, Lucas, Susan, Richardson, Paul, Larimer, Frank, Hauser, Loren, Land, Miriam, Cavicchioli, Ricardo

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High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwat... by Ramsay, Bradley D., Hwang, Chiachi, Woo, Hannah L., Carroll, Sue L., Lucas, Susan, Han, James, Lapidus, Alla L., Cheng, Jan-Fang, Goodwin, Lynne A., Pitluck, Samuel, Peters, Lin, Chertkov, Olga, Held, Brittany, Detter, John C., Han, Cliff S., Tapia, Roxanne, Land, Miriam L., Hauser, Loren J., Kyrpides, Nikos C., Ivanova, Natalia N., Mikhailova, Natalia, Pagani, Ioanna, Woyke, Tanja, Arkin, Adam P., Dehal, Paramvir, Chivian, Dylan, Criddle, Craig S., Wu, Weimin, Chakraborty, Romy, Hazen, Terry C., Fields, Matthew W.

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Author Correction: A genomic catalog of Earth’s microbiomes by Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B. K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Mouncey, Nigel J., Ivanova, Natalia N., Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.

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Publisher Correction: A genomic catalog of Earth’s microbiomes by Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B. K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Mouncey, Nigel J., Ivanova, Natalia N., Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.

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