Søgeresultater - David Tse

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  1. 1
    Near-optimal assembly for shotgun sequencing with noisy reads

    Near-optimal assembly for shotgun sequencing with noisy reads af Ka-Kit Lam, Asif Khalak, David Tse

    Udgivet 2014
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  2. 2
    Optimal assembly for high throughput shotgun sequencing

    Optimal assembly for high throughput shotgun sequencing af Guy Bresler, Ma’ayan Bresler, David Tse

    Udgivet 2013
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  3. 3
    Determining sequencing depth in a single-cell RNA-seq experiment

    Determining sequencing depth in a single-cell RNA-seq experiment af Martin Jinye Zhang, Vasilis Ntranos, David Tse

    Udgivet 2020
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  4. 4
    Fundamental limits of DNA storage systems

    Fundamental limits of DNA storage systems af Reinhard Heckel, Ilan Shomorony, Kannan Ramchandran, David Tse

    Udgivet 2017
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  5. 5
    Valid Post-clustering Differential Analysis for Single-Cell RNA-Seq

    Valid Post-clustering Differential Analysis for Single-Cell RNA-Seq af Jesse M. Zhang, Govinda M. Kamath, David Tse

    Udgivet 2019
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  6. 6
    Shannon: An Information-Optimal de Novo RNA-Seq Assembler

    Shannon: An Information-Optimal de Novo RNA-Seq Assembler af Sreeram Kannan, Joseph Hui, Kayvon Mazooji, Lior Pachter, David Tse

    Udgivet 2016
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  7. 7
    FinisherSC: a repeat-aware tool for upgrading <i>de novo</i> assembly using long reads

    FinisherSC: a repeat-aware tool for upgrading <i>de novo</i> assembly using long reads af Ka-Kit Lam, Kurt LaButti, Asif Khalak, David Tse

    Udgivet 2015
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  8. 8
    An interpretable framework for clustering single-cell RNA-Seq datasets

    An interpretable framework for clustering single-cell RNA-Seq datasets af Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse

    Udgivet 2018
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  9. 9
    Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts

    Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts af Vasilis Ntranos, Govinda M. Kamath, Jesse M. Zhang, Lior Pachter, David Tse

    Udgivet 2016
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  10. 10
    Long-term course of patients with primary ocular adnexal MALT lymphoma: a large single-institution cohort study

    Long-term course of patients with primary ocular adnexal MALT lymphoma: a large single-institution cohort study af Amrita J. Desai, Madhura Joag, Lazaros J. Lekakis, Jennifer R. Chapman, Francisco Vega, Robert Tibshirani, David Tse, Arnold M. Markoe, Izidore S. Lossos

    Udgivet 2016
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  11. 11
    Risky Family Climates Presage Increased Cellular Aging in Young Adulthood

    Risky Family Climates Presage Increased Cellular Aging in Young Adulthood af Brody, Gene H., Yu, Tianyi, Chen, Edith, Kobor, Michael, Beach, Steven R. H., Lei, Man-Kit, Barr, Ashley, Lin, David Tse-Shen, Miller, Gregory E.

    Udgivet 2021
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  12. 12
    Distinctions between sex and time in patterns of DNA methylation across puberty

    Distinctions between sex and time in patterns of DNA methylation across puberty af Moore, Sarah Rose, Humphreys, Kathryn Leigh, Colich, Natalie Lisanne, Davis, Elena Goetz, Lin, David Tse Shen, MacIsaac, Julia Lynn, Kobor, Michael Steffen, Gotlib, Ian Henry

    Udgivet 2020
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  13. 13
    Safety and Effects of the Vector for the Leber Hereditary Optic Neuropathy Gene Therapy Clinical Trial

    Safety and Effects of the Vector for the Leber Hereditary Optic Neuropathy Gene Therapy Clinical Trial af Rajeshwari D. Koilkonda, Hong Yu, Tsung-Han Chou, William J. Feuer, Marco Ruggeri, Vittorio Porciatti, David Tse, William W. Hauswirth, Vince A. Chiodo, Sanford L. Boye, Alfred S. Lewin, Martha Neuringer, Lauren Renner, John Guy

    Udgivet 2014
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  14. 14
    Large dataset enables prediction of repair after CRISPR–Cas9 editing in primary T cells

    Large dataset enables prediction of repair after CRISPR–Cas9 editing in primary T cells af Ryan T. Leenay, Amirali Aghazadeh, Joseph Hiatt, David Tse, Theodore L. Roth, Ryan Apathy, Eric Shifrut, Judd F. Hultquist, Nevan J. Krogan, Zhenqin Wu, Giana Cirolia, Hera Canaj, Manuel D. Leonetti, Alexander Marson, Andrew P. May, James Zou

    Udgivet 2019
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  15. 15
    Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array

    Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array af McEwen, Lisa M, Jones, Meaghan J, Lin, David Tse Shen, Edgar, Rachel D, Husquin, Lucas T, MacIsaac, Julia L, Ramadori, Katia E, Morin, Alexander M, Rider, Christopher F, Carlsten, Chris, Quintana-Murci, Lluís, Horvath, Steve, Kobor, Michael S

    Udgivet 2018
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  16. 16
    Parallel Gene Expression Changes in Sarcoidosis Involving the Lacrimal Gland, Orbital Tissue, or Blood

    Parallel Gene Expression Changes in Sarcoidosis Involving the Lacrimal Gland, Orbital Tissue, or Blood af James T. Rosenbaum, Dongseok Choi, David J. Wilson, Hans E. Grossniklaus, Christina A. Harrington, Cailin H. Sibley, Roger A. Dailey, John D. Ng, Eric A. Steele, Craig N. Czyz, Jill A. Foster, David Tse, Chrisfouad R. Alabiad, Sander R. Dubovy, Prashant K. Parekh, Gerald J. Harris, Michael Kazim, Payal Patel, Valerie A. White, Peter J. Dolman, Bobby S. Korn, Don O. Kikkawa, Deepak P. Edward, Hind M. Alkatan, Hailah Al‐Hussain, R. Patrick Yeatts, Dinesh Selva, Patrick Stauffer, Stephen R. Planck

    Udgivet 2015
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  17. 17
    Orbital pseudotumor can be a localized form of granulomatosis with polyangiitis as revealed by gene expression profiling

    Orbital pseudotumor can be a localized form of granulomatosis with polyangiitis as revealed by gene expression profiling af James E. Rosenbaum, Dongseok Choi, David J. Wilson, Hans E. Grossniklaus, Christina A. Harrington, Cailin H. Sibley, Roger A. Dailey, John D. Ng, Eric A. Steele, Craig N. Czyz, Jill A. Foster, David Tse, Chrisfouad R. Alabiad, Sander R. Dubovy, Prashant K. Parekh, Gerald J. Harris, Michael Kazim, Payal Patel, Valerie A. White, Peter J. Dolman, Bobby S. Korn, Don O. Kikkawa, Deepak P. Edward, Hind M. Alkatan, Hailah Al‐Hussain, R. Patrick Yeatts, Dinesh Selva, Patrick Stauffer, Stephen R. Planck

    Udgivet 2015
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  18. 18
    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells

    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells af McEwen, Lisa M., O’Donnell, Kieran J., McGill, Megan G., Edgar, Rachel D., Jones, Meaghan J., MacIsaac, Julia L., Lin, David Tse Shen, Ramadori, Katia, Morin, Alexander, Gladish, Nicole, Garg, Elika, Unternaehrer, Eva, Pokhvisneva, Irina, Karnani, Neerja, Kee, Michelle Z. L., Klengel, Torsten, Adler, Nancy E., Barr, Ronald G., Letourneau, Nicole, Giesbrecht, Gerald F., Reynolds, James N., Czamara, Darina, Armstrong, Jeffrey M., Essex, Marilyn J., de Weerth, Carolina, Beijers, Roseriet, Tollenaar, Marieke S., Bradley, Bekh, Jovanovic, Tanja, Ressler, Kerry J., Steiner, Meir, Entringer, Sonja, Wadhwa, Pathik D., Buss, Claudia, Bush, Nicole R., Binder, Elisabeth B., Boyce, W. Thomas, Meaney, Michael J., Horvath, Steve, Kobor, Michael S.

    Udgivet 2020
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  19. 19
    Longitudinal multi-omics of host–microbe dynamics in prediabetes

    Longitudinal multi-omics of host–microbe dynamics in prediabetes af Wenyu Zhou, M. Reza Sailani, Kévin Contrepois, Yanjiao Zhou, Sara Ahadi, Shana R. Leopold, Martin Jinye Zhang, Varsha Rao, Monika Avina, Tejaswini Mishra, Jethro S. Johnson, Brittany Lee‐McMullen, Songjie Chen, Ahmed A. Metwally, Thi Dong Binh Tran, Hoan Nguyen, Xin Zhou, Brandon Albright, Bo‐Young Hong, Lauren Petersen, Eddy J. Bautista, Blake Hanson, Lei Chen, Daniel Spakowicz, Amir Bahmani, Denis Salins, Benjamin Leopold, Melanie Ashland, Orit Dagan‐Rosenfeld, Shannon Rego, Patricia Limcaoco, Elizabeth Colbert, Candice Allister, Dalia Perelman, Colleen Craig, Eric Wei, Hassan Chaı̈b, Daniel Hornburg, Jessilyn Dunn, Liang Liang, Sophia Miryam Schüssler‐Fiorenza Rose, Kim Kukurba, Brian Piening, Hannes Röst, David Tse, Tracey McLaughlin, Erica Sodergren, George M. Weinstock, M Snyder

    Udgivet 2019
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  20. 20
    Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults

    Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults af Ben-Othman, Rym, Cai, Bing, Liu, Aaron C., Varankovich, Natallia, He, Daniel, Blimkie, Travis M., Lee, Amy H., Gill, Erin E., Novotny, Mark, Aevermann, Brian, Drissler, Sibyl, Shannon, Casey P., McCann, Sarah, Marty, Kim, Bjornson, Gordean, Edgar, Rachel D., Lin, David Tse Shen, Gladish, Nicole, Maclsaac, Julia, Amenyogbe, Nelly, Chan, Queenie, Llibre, Alba, Collin, Joyce, Landais, Elise, Le, Khoa, Reiss, Samantha M., Koff, Wayne C., Havenar-Daughton, Colin, Heran, Manraj, Sangha, Bippan, Walt, David, Krajden, Mel, Crotty, Shane, Sok, Devin, Briney, Bryan, Burton, Dennis R., Duffy, Darragh, Foster, Leonard J., Mohn, William W., Kobor, Michael S., Tebbutt, Scott J., Brinkman, Ryan R., Scheuermann, Richard H., Hancock, Robert E. W., Kollmann, Tobias R., Sadarangani, Manish

    Udgivet 2020
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