Resultats de la cerca - David Tse

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  1. 1
    Near-optimal assembly for shotgun sequencing with noisy reads

    Near-optimal assembly for shotgun sequencing with noisy reads per Ka-Kit Lam, Asif Khalak, David Tse

    Publicat 2014
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  2. 2
    Optimal assembly for high throughput shotgun sequencing

    Optimal assembly for high throughput shotgun sequencing per Guy Bresler, Ma’ayan Bresler, David Tse

    Publicat 2013
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  3. 3
    Determining sequencing depth in a single-cell RNA-seq experiment

    Determining sequencing depth in a single-cell RNA-seq experiment per Martin Jinye Zhang, Vasilis Ntranos, David Tse

    Publicat 2020
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  4. 4
    Fundamental limits of DNA storage systems

    Fundamental limits of DNA storage systems per Reinhard Heckel, Ilan Shomorony, Kannan Ramchandran, David Tse

    Publicat 2017
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  5. 5
    Valid Post-clustering Differential Analysis for Single-Cell RNA-Seq

    Valid Post-clustering Differential Analysis for Single-Cell RNA-Seq per Jesse M. Zhang, Govinda M. Kamath, David Tse

    Publicat 2019
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  6. 6
    Shannon: An Information-Optimal de Novo RNA-Seq Assembler

    Shannon: An Information-Optimal de Novo RNA-Seq Assembler per Sreeram Kannan, Joseph Hui, Kayvon Mazooji, Lior Pachter, David Tse

    Publicat 2016
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  7. 7
    FinisherSC: a repeat-aware tool for upgrading <i>de novo</i> assembly using long reads

    FinisherSC: a repeat-aware tool for upgrading <i>de novo</i> assembly using long reads per Ka-Kit Lam, Kurt LaButti, Asif Khalak, David Tse

    Publicat 2015
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  8. 8
    An interpretable framework for clustering single-cell RNA-Seq datasets

    An interpretable framework for clustering single-cell RNA-Seq datasets per Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse

    Publicat 2018
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  9. 9
    Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts

    Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts per Vasilis Ntranos, Govinda M. Kamath, Jesse M. Zhang, Lior Pachter, David Tse

    Publicat 2016
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  10. 10
    Long-term course of patients with primary ocular adnexal MALT lymphoma: a large single-institution cohort study

    Long-term course of patients with primary ocular adnexal MALT lymphoma: a large single-institution cohort study per Amrita J. Desai, Madhura Joag, Lazaros J. Lekakis, Jennifer R. Chapman, Francisco Vega, Robert Tibshirani, David Tse, Arnold M. Markoe, Izidore S. Lossos

    Publicat 2016
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  11. 11
    Risky Family Climates Presage Increased Cellular Aging in Young Adulthood

    Risky Family Climates Presage Increased Cellular Aging in Young Adulthood per Brody, Gene H., Yu, Tianyi, Chen, Edith, Kobor, Michael, Beach, Steven R. H., Lei, Man-Kit, Barr, Ashley, Lin, David Tse-Shen, Miller, Gregory E.

    Publicat 2021
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  12. 12
    Distinctions between sex and time in patterns of DNA methylation across puberty

    Distinctions between sex and time in patterns of DNA methylation across puberty per Moore, Sarah Rose, Humphreys, Kathryn Leigh, Colich, Natalie Lisanne, Davis, Elena Goetz, Lin, David Tse Shen, MacIsaac, Julia Lynn, Kobor, Michael Steffen, Gotlib, Ian Henry

    Publicat 2020
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  13. 13
    Safety and Effects of the Vector for the Leber Hereditary Optic Neuropathy Gene Therapy Clinical Trial

    Safety and Effects of the Vector for the Leber Hereditary Optic Neuropathy Gene Therapy Clinical Trial per Rajeshwari D. Koilkonda, Hong Yu, Tsung-Han Chou, William J. Feuer, Marco Ruggeri, Vittorio Porciatti, David Tse, William W. Hauswirth, Vince A. Chiodo, Sanford L. Boye, Alfred S. Lewin, Martha Neuringer, Lauren Renner, John Guy

    Publicat 2014
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  14. 14
    Large dataset enables prediction of repair after CRISPR–Cas9 editing in primary T cells

    Large dataset enables prediction of repair after CRISPR–Cas9 editing in primary T cells per Ryan T. Leenay, Amirali Aghazadeh, Joseph Hiatt, David Tse, Theodore L. Roth, Ryan Apathy, Eric Shifrut, Judd F. Hultquist, Nevan J. Krogan, Zhenqin Wu, Giana Cirolia, Hera Canaj, Manuel D. Leonetti, Alexander Marson, Andrew P. May, James Zou

    Publicat 2019
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  15. 15
    Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array

    Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array per McEwen, Lisa M, Jones, Meaghan J, Lin, David Tse Shen, Edgar, Rachel D, Husquin, Lucas T, MacIsaac, Julia L, Ramadori, Katia E, Morin, Alexander M, Rider, Christopher F, Carlsten, Chris, Quintana-Murci, Lluís, Horvath, Steve, Kobor, Michael S

    Publicat 2018
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  16. 16
    Parallel Gene Expression Changes in Sarcoidosis Involving the Lacrimal Gland, Orbital Tissue, or Blood

    Parallel Gene Expression Changes in Sarcoidosis Involving the Lacrimal Gland, Orbital Tissue, or Blood per James T. Rosenbaum, Dongseok Choi, David J. Wilson, Hans E. Grossniklaus, Christina A. Harrington, Cailin H. Sibley, Roger A. Dailey, John D. Ng, Eric A. Steele, Craig N. Czyz, Jill A. Foster, David Tse, Chrisfouad R. Alabiad, Sander R. Dubovy, Prashant K. Parekh, Gerald J. Harris, Michael Kazim, Payal Patel, Valerie A. White, Peter J. Dolman, Bobby S. Korn, Don O. Kikkawa, Deepak P. Edward, Hind M. Alkatan, Hailah Al‐Hussain, R. Patrick Yeatts, Dinesh Selva, Patrick Stauffer, Stephen R. Planck

    Publicat 2015
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  17. 17
    Orbital pseudotumor can be a localized form of granulomatosis with polyangiitis as revealed by gene expression profiling

    Orbital pseudotumor can be a localized form of granulomatosis with polyangiitis as revealed by gene expression profiling per James E. Rosenbaum, Dongseok Choi, David J. Wilson, Hans E. Grossniklaus, Christina A. Harrington, Cailin H. Sibley, Roger A. Dailey, John D. Ng, Eric A. Steele, Craig N. Czyz, Jill A. Foster, David Tse, Chrisfouad R. Alabiad, Sander R. Dubovy, Prashant K. Parekh, Gerald J. Harris, Michael Kazim, Payal Patel, Valerie A. White, Peter J. Dolman, Bobby S. Korn, Don O. Kikkawa, Deepak P. Edward, Hind M. Alkatan, Hailah Al‐Hussain, R. Patrick Yeatts, Dinesh Selva, Patrick Stauffer, Stephen R. Planck

    Publicat 2015
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  18. 18
    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells

    The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells per McEwen, Lisa M., O’Donnell, Kieran J., McGill, Megan G., Edgar, Rachel D., Jones, Meaghan J., MacIsaac, Julia L., Lin, David Tse Shen, Ramadori, Katia, Morin, Alexander, Gladish, Nicole, Garg, Elika, Unternaehrer, Eva, Pokhvisneva, Irina, Karnani, Neerja, Kee, Michelle Z. L., Klengel, Torsten, Adler, Nancy E., Barr, Ronald G., Letourneau, Nicole, Giesbrecht, Gerald F., Reynolds, James N., Czamara, Darina, Armstrong, Jeffrey M., Essex, Marilyn J., de Weerth, Carolina, Beijers, Roseriet, Tollenaar, Marieke S., Bradley, Bekh, Jovanovic, Tanja, Ressler, Kerry J., Steiner, Meir, Entringer, Sonja, Wadhwa, Pathik D., Buss, Claudia, Bush, Nicole R., Binder, Elisabeth B., Boyce, W. Thomas, Meaney, Michael J., Horvath, Steve, Kobor, Michael S.

    Publicat 2020
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  19. 19
    Longitudinal multi-omics of host–microbe dynamics in prediabetes

    Longitudinal multi-omics of host–microbe dynamics in prediabetes per Wenyu Zhou, M. Reza Sailani, Kévin Contrepois, Yanjiao Zhou, Sara Ahadi, Shana R. Leopold, Martin Jinye Zhang, Varsha Rao, Monika Avina, Tejaswini Mishra, Jethro S. Johnson, Brittany Lee‐McMullen, Songjie Chen, Ahmed A. Metwally, Thi Dong Binh Tran, Hoan Nguyen, Xin Zhou, Brandon Albright, Bo‐Young Hong, Lauren Petersen, Eddy J. Bautista, Blake Hanson, Lei Chen, Daniel Spakowicz, Amir Bahmani, Denis Salins, Benjamin Leopold, Melanie Ashland, Orit Dagan‐Rosenfeld, Shannon Rego, Patricia Limcaoco, Elizabeth Colbert, Candice Allister, Dalia Perelman, Colleen Craig, Eric Wei, Hassan Chaı̈b, Daniel Hornburg, Jessilyn Dunn, Liang Liang, Sophia Miryam Schüssler‐Fiorenza Rose, Kim Kukurba, Brian Piening, Hannes Röst, David Tse, Tracey McLaughlin, Erica Sodergren, George M. Weinstock, M Snyder

    Publicat 2019
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  20. 20
    Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults

    Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults per Ben-Othman, Rym, Cai, Bing, Liu, Aaron C., Varankovich, Natallia, He, Daniel, Blimkie, Travis M., Lee, Amy H., Gill, Erin E., Novotny, Mark, Aevermann, Brian, Drissler, Sibyl, Shannon, Casey P., McCann, Sarah, Marty, Kim, Bjornson, Gordean, Edgar, Rachel D., Lin, David Tse Shen, Gladish, Nicole, Maclsaac, Julia, Amenyogbe, Nelly, Chan, Queenie, Llibre, Alba, Collin, Joyce, Landais, Elise, Le, Khoa, Reiss, Samantha M., Koff, Wayne C., Havenar-Daughton, Colin, Heran, Manraj, Sangha, Bippan, Walt, David, Krajden, Mel, Crotty, Shane, Sok, Devin, Briney, Bryan, Burton, Dennis R., Duffy, Darragh, Foster, Leonard J., Mohn, William W., Kobor, Michael S., Tebbutt, Scott J., Brinkman, Ryan R., Scheuermann, Richard H., Hancock, Robert E. W., Kollmann, Tobias R., Sadarangani, Manish

    Publicat 2020
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