Risultati della ricerca - David Swarbreck

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  1. 1
    Efficient and accurate detection of splice junctions from RNA-seq with Portcullis

    Efficient and accurate detection of splice junctions from RNA-seq with Portcullis di Daniel Mapleson, Luca Venturini, Gemy Kaithakottil, David Swarbreck

    Pubblicazione 2018
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  2. 2
    Leveraging multiple transcriptome assembly methods for improved gene structure annotation

    Leveraging multiple transcriptome assembly methods for improved gene structure annotation di Luca Venturini, Shabhonam Caim, Gemy Kaithakottil, Daniel Mapleson, David Swarbreck

    Pubblicazione 2018
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  3. 3
    The mucin-degradation strategy of<i>Ruminococcus gnavus</i>: The importance of intramolecular<i>trans</i>-sialidases

    The mucin-degradation strategy of<i>Ruminococcus gnavus</i>: The importance of intramolecular<i>trans</i>-sialidases di Emmanuelle H. Crost, Louise E. Tailford, Marie Monestier, David Swarbreck, Bernard Henrissat, Lisa Crossman, Nathalie Juge

    Pubblicazione 2016
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  4. 4
    Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative genomics on the heterostyly supergene

    Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative genomics on the heterostyly supergene di Jonathan M. Cocker, Jonathan Wright, Jinhong Li, David Swarbreck, Sarah Dyer, Mario Cáccamo, Philip M. Gilmartin

    Pubblicazione 2018
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  5. 5
    Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways

    Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways di Adrian P. Brown, J. Kroon, David Swarbreck, Melanie Febrer, Tony R. Larson, Ian A. Graham, Mario Cáccamo, Antoni R. Slabas

    Pubblicazione 2012
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  6. 6
    Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium

    Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium di Carl Fishwick, Janet Higgins, Lawrence Percival‐Alwyn, Arianna Hustler, Joanna Pearson, Sarah Bastkowski, Simon Moxon, David Swarbreck, Chris Greenman, Jennifer Southgate

    Pubblicazione 2017
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  7. 7
    Microbiota and Metabolite Profiling Reveal Specific Alterations in Bacterial Community Structure and Environment in the Cystic Fibrosis Airway during Exacerbation

    Microbiota and Metabolite Profiling Reveal Specific Alterations in Bacterial Community Structure and Environment in the Cystic Fibrosis Airway during Exacerbation di Kate B. Twomey, Mark Alston, Shi‐qi An, Oisin O’Connell, Yvonne McCarthy, David Swarbreck, Melanie Febrer, J. Maxwell Dow, Barry J. Plant, Robert P. Ryan

    Pubblicazione 2013
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  8. 8
    Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes

    Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes di David J. Wright, Nicola Hall, Naomi Irish, Angela Man, Will Glynn, Arne W. Mould, Alejandro De Los Angeles, Emily Angiolini, David Swarbreck, Karim Gharbi, Elizabeth M. Tunbridge, Wilfried Haerty

    Pubblicazione 2022
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  9. 9
    Activity of Bdellovibrio Hit Locus Proteins, Bd0108 and Bd0109, Links Type IVa Pilus Extrusion/Retraction Status to Prey-Independent Growth Signalling

    Activity of Bdellovibrio Hit Locus Proteins, Bd0108 and Bd0109, Links Type IVa Pilus Extrusion/Retraction Status to Prey-Independent Growth Signalling di Michael J. Capeness, Carey Lambert, Andrew L. Lovering, Rob Till, Kaoru Uchida, Roy R. Chaudhuri, Luke J. Alderwick, David J. Lee, David Swarbreck, Susan Liddell, Shin‐Ichi Aizawa, R. Elizabeth Sockett

    Pubblicazione 2013
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  10. 10
    Crowdsourcing genomic analyses of ash and ash dieback – power to the people

    Crowdsourcing genomic analyses of ash and ash dieback – power to the people di Dan MacLean, Kentaro Yoshida, Anne Edwards, Lisa Crossman, Bernardo Clavijo, Matt Clark, David Swarbreck, Matthew Bashton, Patrick Chapman, Mark Gijzen, Mario Cáccamo, J. Allan Downie, Sophien Kamoun, Diane G. O. Saunders

    Pubblicazione 2013
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  11. 11
    An improved <i>Nicotiana benthamiana</i> bioproduction chassis provides novel insights into nicotine biosynthesis

    An improved <i>Nicotiana benthamiana</i> bioproduction chassis provides novel insights into nicotine biosynthesis di Katharina Vollheyde, Quentin M. Dudley, Ting Yang, Mehmet Tufan Öz, Davide Mancinotti, Mariano Olivera Fedi, Darren Heavens, Gareth Linsmith, Monika Chhetry, Mark A. Smedley, Wendy Harwood, David Swarbreck, Fernando Geu‐Flores, Nicola J. Patron

    Pubblicazione 2023
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  12. 12
    The Arabidopsis Information Resource (TAIR): gene structure and function annotation

    The Arabidopsis Information Resource (TAIR): gene structure and function annotation di David Swarbreck, Christopher Wilks, P. Lamesch, Tanya Berardini, M. Garcia-Hernandez, Hartmut Foerster, Donghui Li, Tim De Meyer, Rolf Müller, L. Ploetz, Amie Radenbaugh, Sunil Kumar Singh, V. Swing, Christophe P. Tissier, Ping Zhang, Eva Huala

    Pubblicazione 2007
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  13. 13
    The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

    The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools di Philippe Lamesch, Tanya Berardini, Donghui Li, David Swarbreck, Christopher Wilks, Rajkumar Sasidharan, Robert Müller, Kate Dreher, Debbie L. Alexander, M. Garcia-Hernandez, Athikkattuvalasu S. Karthikeyan, Cynthia H. Lee, William D. Nelson, L. Ploetz, Shanker K. Singh, April Wensel, Eva Huala

    Pubblicazione 2011
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  14. 14
    Standards recommendations for the Earth BioGenome Project

    Standards recommendations for the Earth BioGenome Project di Mara Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad‐Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, Katherine Belov, Mark Blaxter, Tomàs Marquès‐Bonet, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Andrew J. Crawford, Robert Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katharina J. Hoff, Kerstin Howe, Erich D. Jarvis, Warren E. Johnson, Rebecca N. Johnson, Paul Kersey, Xin Liu, Jose V. Lopez, Eugene W. Myers, Olga Vinnere Pettersson, Adam M. Phillippy, Monica F. Poelchau, Kim D. Pruitt, Arang Rhie, Carlos Rubio-Terrés, Sunil Kumar Sahu, Nicholas A. Salmon, Pamela S. Soltis, David Swarbreck, Françoise Thibaud‐Nissen, Sibo Wang, Jill L. Wegrzyn, Guojie Zhang, He Zhang, Harris A. Lewin, Stephen Richards

    Pubblicazione 2022
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  15. 15
    DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

    DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage di Michael C. Zody, Manuel Garber, David J. Adams, Ted Sharpe, Jennifer Harrow, James R. Lupski, Christine Nicholson, S. Searle, Laurens Wilming, Sarah Young, Amr Abouelleil, Nicole R. Allen, Weimin Bi, Toby Bloom, Mark L. Borowsky, Boris Bugalter, Jonathan A. Butler, Jean L. Chang, Chao-Kung Chen, April Cook, Benjamin Corum, Christina A. Cuomo, Pieter J. de Jong, David DeCaprio, Ken Dewar, Michael G. FitzGerald, James Gilbert, Richard Gibson, Sante Gnerre, Steven Goldstein, Darren Grafham, Russell Grocock, Nabil Hafez, Daniel S. Hagopian, Elizabeth A. Hart, Catherine Hosage Norman, Sean Humphray, David B. Jaffe, Matthew C. Jones, Michael Kamal, Varsha Khodiyar, Kurt LaButti, Gavin K. Laird, Jessica A. Lehoczky, Xiaohong Liu, Tashi Lokyitsang, Jane Loveland, Annie Lui, Pendexter Macdonald, John E. Major, Lucy Matthews, Evan Mauceli, Steven A. McCarroll, Atanas H. Mihalev, Jonathan M. Mudge, Cindy M. Nguyen, Robert Nicol, Sinéad B. O'Leary, Kazutoyo Osoegawa, David C. Schwartz, Charles Shaw‐Smith, Paweł Stankiewicz, Charles A. Steward, David Swarbreck, Vijay Venkataraman, Charles A. Whittaker, Xiaoping Yang, Andrew Zimmer, Allan Bradley, Tim Hubbard, Bruce W. Birren, Jane Rogers, Eric S. Lander, Chad Nusbaum

    Pubblicazione 2006
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  16. 16
    Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project di Ewan Birney, J Stamatoyannopoulos, Anindya Dutta, Roderic Guigó, T Gingeras, Elliott H. Margulies, Zhiping Weng, M Snyder, Emmanouil T. Dermitzakis, Robert E. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane Neph, Christof Koch, Saurabh Asthana, Ankit Malhotra, Ivan Adzhubei, Jason Greenbaum, Robert Andrews, Paul Flicek, Patrick J. Boyle, Hua Cao, N. P. Carter, Gayle K. Clelland, Sean Davis, Nathan Day, Pawandeep Dhami, Shane C. Dillon, Michael O. Dorschner, Heike Fiegler, Paul G. Giresi, Jeff Goldy, Michael Hawrylycz, Andrew Haydock, Richard Humbert, Keith James, Brett Johnson, Ericka M. Johnson, Tristan Frum, Elizabeth Rosenzweig, Neerja Karnani, Kirsten Lee, Grégory Lefebvre, Patrick A. Navas, Fidencio Neri, Stephen C. J. Parker, Peter J. Sabo, Richard Sandstrom, Anthony Shafer, David Vetrie, Molly Weaver, Sarah Wilcox, Man Yu, Francis S. Collins, Job Dekker, Jason D. Lieb, Thomas D. Tullius, Gregory E. Crawford, Shamil Sunyaev, William Stafford Noble, Ian Dunham, Alexandre Reymond, Philipp Kapranov, Joel Rozowsky, Deyou Zheng, Robert Castelo, Adam Frankish, Jennifer Harrow, Srinka Ghosh, Albin Sandelin, Ivo L. Hofacker, Robert Baertsch, Damian Keefe, Sujit Dike, Jill Cheng, Heather A. Hirsch, Edward A. Sekinger, Julien Lagarde, Josep F. Abril, Atif Shahab, Christoph Flamm, Claudia Fried, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, Jan O. Korbel, Olof Emanuelsson, Jakob Skou Pedersen, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, Mark Dickson, Daryl J. Thomas, Matthew T. Weirauch, James Gilbert, Jörg Drenkow

    Pubblicazione 2007
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  17. 17
    The DNA sequence and biological annotation of human chromosome 1

    The DNA sequence and biological annotation of human chromosome 1 di Simon G. Gregory, K. F. Barlow, K. E. McLay, Rajinder Kaul, David Swarbreck, Andrew Dunham, Carol Scott, Kevin Howe, Kathryn Woodfine, Chris C.A. Spencer, Matthew C. Jones, Christopher Gillson, S. Searle, Yang Zhou, Felix Kokocinski, Louise McDonald, Richard S. Evans, K. Phillips, Alexandre Atkinson, Rachel Cooper, C. Jones, R. E. Hall, T. Daniel Andrews, Christine Lloyd, R. Ainscough, J. P. Almeida, K. D. Ambrose, Frank E. Anderson, Rob Andrew, R. I. S. Ashwell, K. Aubin, Anne Babbage, C. L. Bagguley, J. Bailey, Helen Beasley, Graeme Bethel, Christine Bird, S. Bray-Allen, J. Y. Brown, Andrew J. Brown, Danielle Buckley, J.H. Burton, Jacqueline M. Bye, C. Carder, J. C. Chapman, S. Y. Clark, Geraldine M Clarke, Christopher Clee, V. Cobley, R. E. Collier, N. Corby, G. J. Coville, J. Davies, Rebecca Deadman, Matthew Dunn, M. E. Earthrowl, Andrew Ellington, Helen Errington, Adam Frankish, J. D. Frankland, Lisa French, P. Garner, J. Garnett, Laurène Gay, Mohammed Ghori, Richard Gibson, L. M. Gilby, Will Gillett, Rebecca Glithero, Darren Grafham, Chris Griffiths, Sam Griffiths‐Jones, Russell Grocock, S. Austin Hammond, E. S. I. Harrison, Elizabeth A. Hart, Eric Haugen, P. D. Heath, S. Holmes, Karen Holt, Philip Howden, Adrienne Hunt, Sarah Hunt, Glenn C. Hunter, J. Isherwood, Richard James, Christopher M. Johnson, David J. Johnson, A. A. Joy, Mike Kay, J. K. Kershaw, Miho Kibukawa, A. M. Kimberley, Andrew King, Andrew Knights, Heena V. Lad, Gavin K. Laird, Stephanie Lawlor, Daniel Leongamornlert, David Lloyd

    Pubblicazione 2006
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  18. 18
    The DNA sequence and comparative analysis of human chromosome 10

    The DNA sequence and comparative analysis of human chromosome 10 di Panos Deloukas, M. E. Earthrowl, Darren Grafham, Marc Rubenfield, Lisa French, Charles A. Steward, Sarah Sims, Matthew C. Jones, S. Searle, Carol Scott, Kevin Howe, Sarah Hunt, T. Daniel Andrews, James Gilbert, David Swarbreck, Jennifer Ashurst, Amy Taylor, J K Battles, Christine Bird, R. Ainscough, J. P. Almeida, R. I. S. Ashwell, K. D. Ambrose, Anne Babbage, C. L. Bagguley, J. Bailey, Ruby Banerjee, K. Bates, Helen Beasley, S. Bray-Allen, Andrew Brown, J. Y. Brown, D. C. Burford, W. Burrill, J.H. Burton, Patrick Cahill, D. Camire, N. P. Carter, J. C. Chapman, S. Y. Clark, Geraldine M Clarke, Chris M. Clee, S. Clegg, N. Corby, Alan Coulson, Pawandeep Dhami, Ireena Dutta, Matt Dunn, L. Faulkner, Adam Frankish, Julie Frankland, P. Garner, J. Garnett, Susan Gribble, Chris Griffiths, Russell Grocock, Erik Gustafson, S. Austin Hammond, Joanna Harley, Elizabeth A. Hart, P. D. Heath, T. P. Ho, Barbara Hopkins, Jane Anne Horne, Philip Howden, Elizabeth J. Huckle, Catherine Hynds, Christopher M. Johnson, David J. Johnson, A. Kana, Mike Kay, A. M. Kimberley, J. K. Kershaw, Maria Kokkinaki, Gavin K. Laird, Stephanie Lawlor, H. M. Lee, Daniel Leongamornlert, Gavin K. Laird, Christine Lloyd, David Lloyd, Jane Loveland, J. Lovell, Stuart McLaren, K. E. McLay, Amanda A. McMurray, M. Mashreghi-Mohammadi, L. Matthews, Sarah Milne, T. Nickerson, Minh Quang Nguyen, E. K. Overton-Larty, Sophie Palmer, A. V. Pearce, A. I. Peck, Sarah Pelan, Benjamin Phillimore, Keith Porter, Catherine M. Rice, Andrea Rogosin

    Pubblicazione 2004
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