Search Results - Daofeng Li

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  1. 1
    Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation

    Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation by Daofeng Li, Bo Zhang, Xiaoyun Xing, Ting Wang

    Published 2014
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  2. 2
    WashU Epigenome Browser update 2019

    WashU Epigenome Browser update 2019 by Daofeng Li, Silas Hsu, Deepak Purushotham, Renee Sears, Ting Wang

    Published 2019
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  3. 3
    WashU Epigenome Browser update 2025

    WashU Epigenome Browser update 2025 by Chanrung Seng, Shane Liu, Wenjin Zhang, Xiaoyu Zhuo, Daofeng Li, Ting Wang

    Published 2025
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  4. 4
    Exploring long-range genome interactions using the WashU Epigenome Browser

    Exploring long-range genome interactions using the WashU Epigenome Browser by Xin Zhou, Rebecca F. Lowdon, Daofeng Li, Heather A. Lawson, Pamela A. F. Madden, J Costello, Ting Wang

    Published 2013
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  5. 5
    Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos

    Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos by Hyung Joo Lee, Rebecca F. Lowdon, Brett Maricque, Bo Zhang, Michael Stevens, Daofeng Li, Stephen L. Johnson, Ting Wang

    Published 2015
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  6. 6
    A high-fat diet alters genome-wide DNA methylation and gene expression in SM/J mice

    A high-fat diet alters genome-wide DNA methylation and gene expression in SM/J mice by Madeline Rose Keleher, Syeda Nuzhat Fatima Zaidi, Lauren E. Hicks, Shyam Shah, Xiaoyun Xing, Daofeng Li, Ting Wang, James M. Cheverud

    Published 2018
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  7. 7
    methylGrapher: genome-graph-based processing of DNA methylation data from whole genome bisulfite sequencing

    methylGrapher: genome-graph-based processing of DNA methylation data from whole genome bisulfite sequencing by Wenjin Zhang, Juan F Macias-Velasco, Xiaoyu Zhuo, Edward A. Belter, Chad Tomlinson, John Garza, Nina Tekkey, Daofeng Li, Ting Wang

    Published 2025
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  8. 8
    Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser

    Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser by Xin Zhou, Daofeng Li, Bo Zhang, Rebecca F. Lowdon, Nicole B. Rockweiler, Renee Sears, Pamela A. F. Madden, Ivan Smirnov, J Costello, Ting Wang

    Published 2015
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  9. 9
    The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

    The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions by Yanli Wang, Bo Zhang, Lijun Zhang, Lin An, Jie Xu, Daofeng Li, Mayank Choudhary, Yun Li, Ming Hu, Ross C. Hardison, Ting Wang, Feng Yue

    Published 2017
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  10. 10
    Induction of hematopoietic and endothelial cell program orchestrated by <scp>ETS</scp> transcription factor <scp>ER</scp> 71/ <scp>ETV</scp> 2

    Induction of hematopoietic and endothelial cell program orchestrated by <scp>ETS</scp> transcription factor <scp>ER</scp> 71/ <scp>ETV</scp> 2 by Fang Liu, Daofeng Li, Yik Y. L. Yu, Inyoung Kang, Min‐Ji Cha, Ju Young Kim, Changwon Park, Dennis K. Watson, Ting Wang, Kyunghee Choi

    Published 2015
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  11. 11
    Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

    Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods by Michael Stevens, Jeffrey B. Cheng, Daofeng Li, Mingchao Xie, Chibo Hong, Cécile L. Maire, Keith L. Ligon, Martin Hirst, Marco A. Marra, J Costello, Ting Wang

    Published 2013
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  12. 12
    DNA methyltransferase 3b regulates articular cartilage homeostasis by altering metabolism

    DNA methyltransferase 3b regulates articular cartilage homeostasis by altering metabolism by Jie Shen, Cuicui Wang, Daofeng Li, Taotao Xu, Jason R. Myers, John M. Ashton, Ting Wang, Michael J. Zuscik, Audrey McAlinden, Regis J. O’Keefe

    Published 2017
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  13. 13
    Maternal high-fat diet associated with altered gene expression, DNA methylation, and obesity risk in mouse offspring

    Maternal high-fat diet associated with altered gene expression, DNA methylation, and obesity risk in mouse offspring by Madeline Rose Keleher, Syeda Nuzhat Fatima Zaidi, Shyam Shah, MaryAnn Oakley, Cassondra Pavlatos, Samir El Idrissi, Xiaoyun Xing, Daofeng Li, Ting Wang, James M. Cheverud

    Published 2018
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  14. 14
    The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

    The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions by Yanli Wang, Fan Song, Bo Zhang, Lijun Zhang, Jie Xu, Da Kuang, Daofeng Li, Mayank Choudhary, Yun Li, Ming Hu, Ross C. Hardison, Ting Wang, Feng Yue

    Published 2018
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  15. 15
    WashU Epigenome Browser update 2022

    WashU Epigenome Browser update 2022 by Daofeng Li, Deepak Purushotham, Jessica K. Harrison, Silas Hsu, Xiaoyu Zhuo, Changxu Fan, Shane Liu, Vincent Xu, Samuel Chen, Jason Xu, Shinyi Ouyang, Angela S. Wu, Ting Wang

    Published 2022
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  16. 16
    Mapping of Variable DNA Methylation Across Multiple Cell Types Defines a Dynamic Regulatory Landscape of the Human Genome

    Mapping of Variable DNA Methylation Across Multiple Cell Types Defines a Dynamic Regulatory Landscape of the Human Genome by Junchen Gu, Michael Stevens, Xiaoyun Xing, Daofeng Li, Bo Zhang, Jacqueline E. Payton, Eugene M. Oltz, James N. Jarvis, Kaiyu Jiang, Theodore J. Cicero, J Costello, Ting Wang

    Published 2016
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  17. 17
    DNA unmethylome profiling by covalent capture of CpG sites

    DNA unmethylome profiling by covalent capture of CpG sites by Edita Kriukienė, Viviane Labrie, Tarang Khare, Giedrė Urbanavičiūtė, Audronė Lapinaitė, Karolis Koncevičius, Daofeng Li, Ting Wang, Shraddha Pai, Carolyn Ptak, Juozas Gordevičius, Sun-Chong Wang, Artūras Petronis, Saulius Klimašauskas

    Published 2013
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  18. 18
    MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts

    MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts by Daniel G. Abernathy, Woo Kyung Kim, Matthew J. McCoy, Allison M. Lake, Rebecca Ouwenga, Seong Won Lee, Xiaoyun Xing, Daofeng Li, Hyung Joo Lee, Robert O. Heuckeroth, Joseph D. Dougherty, Ting Wang, Andrew S. Yoo

    Published 2017
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  19. 19
    Transposable elements drive widespread expression of oncogenes in human cancers

    Transposable elements drive widespread expression of oncogenes in human cancers by H. Josh Jang, Nakul M. Shah, Alan Y. Du, Zea Z. Dailey, Erica C. Pehrsson, Paula M. Godoy, David Zhang, Daofeng Li, Xiaoyun Xing, Sung‐Su Kim, David O’Donnell, Jeffrey I. Gordon, Ting Wang

    Published 2019
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  20. 20
    Perinatal deiodinase 2 expression in hepatocytes defines epigenetic susceptibility to liver steatosis and obesity

    Perinatal deiodinase 2 expression in hepatocytes defines epigenetic susceptibility to liver steatosis and obesity by Tatiana L. Fonseca, Gustavo W. Fernandes, Elizabeth A. McAninch, Bárbara M. L. C. Bocco, Sherine M. Abdalla, Miriam O. Ribeiro, Petra Mohácsik, Csaba Fekete, Daofeng Li, Xiaoyun Xing, Ting Wang, Balázs Gereben, Antônio C. Bianco

    Published 2015
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