Search Results - Daniel R. Caffrey

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  1. 1
    Long noncoding RNAs in innate and adaptive immunity

    Long noncoding RNAs in innate and adaptive immunity by Katherine A. Fitzgerald, Daniel R. Caffrey

    Published 2013
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  2. 2
    Immunobiology of Long Noncoding RNAs

    Immunobiology of Long Noncoding RNAs by Maninjay Atianand, Daniel R. Caffrey, Katherine A. Fitzgerald

    Published 2017
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  3. 3
    Are protein–protein interfaces more conserved in sequence than the rest of the protein surface?

    Are protein–protein interfaces more conserved in sequence than the rest of the protein surface? by Daniel R. Caffrey, Shyamal Somaroo, Jason D. Hughes, Julian Mintseris, Enoch S. Huang

    Published 2003
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  4. 4
    SLC46 Family Transporters Facilitate Cytosolic Innate Immune Recognition of Monomeric Peptidoglycans

    SLC46 Family Transporters Facilitate Cytosolic Innate Immune Recognition of Monomeric Peptidoglycans by Donggi Paik, Amanda Monahan, Daniel R. Caffrey, Roland Elling, William E. Goldman, Neal Silverman

    Published 2017
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  5. 5
    Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α

    Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α by Jennie Chan, Maninjay Atianand, Zhaozhao Jiang, Susan Carpenter, Daniel Andrew Aiello, Roland Elling, Katherine A. Fitzgerald, Daniel R. Caffrey

    Published 2015
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  6. 6
    AIM2 recognizes cytosolic dsDNA and forms a caspase-1-activating inflammasome with ASC

    AIM2 recognizes cytosolic dsDNA and forms a caspase-1-activating inflammasome with ASC by Veit Hornung, Andrea Ablasser, Marie Charrel-Dennis, Franz Bauernfeind, Gábor Horváth, Daniel R. Caffrey, Eicke Latz, Katherine A. Fitzgerald

    Published 2009
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  7. 7
    siRNA Off-Target Effects Can Be Reduced at Concentrations That Match Their Individual Potency

    siRNA Off-Target Effects Can Be Reduced at Concentrations That Match Their Individual Potency by Daniel R. Caffrey, Juan Zhao, Zhili Song, Michael Schäffer, Steven A. Haney, Romesh R. Subramanian, Albert Seymour, Jason D. Hughes

    Published 2011
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  8. 8
    miR-718 represses proinflammatory cytokine production through targeting phosphatase and tensin homolog (PTEN)

    miR-718 represses proinflammatory cytokine production through targeting phosphatase and tensin homolog (PTEN) by Parisa Kalantari, Omid F. Harandi, Sarika Agarwal, Florentina Rus, Evelyn A. Kurt‐Jones, Katherine A. Fitzgerald, Daniel R. Caffrey, Douglas T. Golenbock

    Published 2017
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  9. 9
    LPS-TLR4 Signaling to IRF-3/7 and NF-κB Involves the Toll Adapters TRAM and TRIF

    LPS-TLR4 Signaling to IRF-3/7 and NF-κB Involves the Toll Adapters TRAM and TRIF by Katherine A. Fitzgerald, Daniel C. Rowe, Betsy Barnes, Daniel R. Caffrey, Alberto Visintin, Eicke Latz, Brian G. Monks, Paula M. Pitha, Douglas T. Golenbock

    Published 2003
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  10. 10
    PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments

    PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments by Daniel R. Caffrey, Paul H Dana, Vidhya Mathur, Marco Ocano, Eun‐Jong Hong, Yaoyu E. Wang, Shyamal Somaroo, Brian E. Caffrey, Shobha Potluri, Enoch S. Huang

    Published 2007
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  11. 11
    PFRED: A computational platform for siRNA and antisense oligonucleotides design

    PFRED: A computational platform for siRNA and antisense oligonucleotides design by Simone Sciabola, Hualin Simon Xi, Dario A. Cruz, Qing Cao, Christine Lawrence, Tianhong Zhang, Sergio H. Rotstein, Jason D. Hughes, Daniel R. Caffrey, Robert V. Stanton

    Published 2021
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  12. 12
    Inflammasome-derived cytokine IL18 suppresses amyloid-induced seizures in Alzheimer-prone mice

    Inflammasome-derived cytokine IL18 suppresses amyloid-induced seizures in Alzheimer-prone mice by Te‐Chen Tzeng, Yuto Hasegawa, Risa Iguchi, Amy Cheung, Daniel R. Caffrey, Elizabeth Jeanne Thatcher, Wenjie Mao, Gail Germain, Nelsy Depaula Tamburro, Shigeo Okabe, Michael T. Heneka, Eicke Latz, Kensuke Futai, Douglas T. Golenbock

    Published 2018
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  13. 13
    A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes

    A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes by Susan Carpenter, Daniel Aiello, Maninjay Atianand, Emiliano P. Ricci, Pallavi Gandhi, Lisa L. Hall, Meg Byron, Brian G. Monks, Meabh Henry-Bezy, Jeanne B. Lawrence, Luke O'neill, Melissa J. Moore, Daniel R. Caffrey, Katherine A. Fitzgerald

    Published 2013
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  14. 14
    Evolution of the Influenza A Virus Genome during Development of Oseltamivir Resistance<i>In Vitro</i>

    Evolution of the Influenza A Virus Genome during Development of Oseltamivir Resistance<i>In Vitro</i> by Nicholas Renzette, Daniel R. Caffrey, Konstantin B. Zeldovich, Ping Liu, Glen R. Gallagher, Daniel Andrew Aiello, Alyssa Jocson Porter, Evelyn A. Kurt‐Jones, Daniel N. Bolon, Yu-Ping Poh, Jeffrey D. Jensen, Celia A. Schiffer, Timothy F. Kowalik, Robert W. Finberg, Jennifer Wang

    Published 2013
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  15. 15
    Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective

    Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective by Matthieu Foll, Yu-Ping Poh, Nicholas Renzette, Anna Ferrer-Admetlla, Claudia Bank, Hyunjin Shim, Anna‐Sapfo Malaspinas, Gregory B. Ewing, Ping Liu, Daniel Wegmann, Daniel R. Caffrey, Konstantin B. Zeldovich, Daniel N. Bolon, Jennifer Wang, Timothy F. Kowalik, Celia A. Schiffer, Robert W. Finberg, Jeffrey D. Jensen

    Published 2014
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  16. 16
    A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation

    A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation by Maninjay Atianand, Wenqian Hu, Ansuman T. Satpathy, Ying Shen, Emiliano P. Ricci, Juan R. Alvarez‐Dominguez, Ankit Bhatta, Stefan A. Schattgen, Jason D. McGowan, Juliana Blin, Joerg E. Braun, Pallavi Gandhi, Melissa J. Moore, Howard Y. Chang, Harvey F. Lodish, Daniel R. Caffrey, Katherine A. Fitzgerald

    Published 2016
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  17. 17
    The Genome of Anopheles darlingi , the main neotropical malaria vector

    The Genome of Anopheles darlingi , the main neotropical malaria vector by Osvaldo Marinotti, Gustavo Cerqueira, Luiz Gonzaga Paula de Almeida, Maria Inês Tiraboschi Ferro, Élgion L. S. Loreto, Arnaldo Zaha, Santuza Maria Ribeiro Teixeira, Adam R. Wespiser, Alexandre de Almeida e Silva, Aline Daiane Schlindwein, Ana Carolina Landim Pacheco, Artur Silva, Brenton R. Graveley, Brian P. Walenz, Bruna de Araújo Lima, Carlos Ribeiro, Carlos Gustavo Nunes-Silva, Carlos Roberto Carvalho, Célia Maria de Almeida Soares, Cláudia Beatriz Afonso de Menezes, Cleverson C. Matiolli, Daniel R. Caffrey, Demétrius A. M. Araújo, Diana Oliveira, Douglas T. Golenbock, Edmundo C. Grisard, Fabiana Fantinatti‐Garboggini, Filomena Marino Carvalho, Fernando Gomes Barcellos, Francisco Prosdocimi, Gemma E. May, Gilson Martins de Azevedo, Giselle Moura Guimarães-Marques, Gustavo H. Goldman, Itácio Queiroz de Mello Padilha, Jacqueline da Silva Batista, Jesus Aparecido Ferro, José M. C. Ribeiro, Juliana Lopes Rangel Fietto, Karina Maia Dabbas, Louise Cerdeira, Lucymara Fassarella Agnez‐Lima, Marcelo Brocchi, Marcos Oliveira de Carvalho, Marcus de Melo Teixeira, Maria de Mascena Diniz Maia, Maria Helena S. Goldman, Maria Paula Cruz Schneider, Maria Sueli Soares Felipe, Mariangela Hungría, Marisa Nicolás, Maristela Pereira, Martín Alejandro Montes, Maurício Egídio Cantão, Michel Vincentz, Míriam Silva Rafael, Neal Silverman, Patrícia Hermes Stoco, Rangel Celso Souza, Renato Vicentini, Ricardo T. Gazzinelli, Rogério de Oliveira Neves, Rosane Silva, Spartaco Astolfi‐Filho, Talles Eduardo Ferreira Maciel, Turán P. Ürményi, Wanderli Pedro Tadei, Erney P. Camargo, Ana Tereza Ribeiro de Vasconcelos

    Published 2013
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  18. 18
    Genomic insights into the Ixodes scapularis tick vector of Lyme disease

    Genomic insights into the Ixodes scapularis tick vector of Lyme disease by Monika Gulia-Nuss, Andrew B. Nuss, Jason M. Meyer, Daniel E. Sonenshine, R. Michael Roe, Robert M. Waterhouse, David B. Sattelle, José de la Fuente, José M. C. Ribeiro, Karyn Mégy, Jyothi Thimmapuram, Jason Miller, Brian P. Walenz, Sergey Koren, Jessica B. Hostetler, Mathangi Thiagarajan, Vinita Joardar, Linda I. Hannick, Shelby Bidwell, M. Hammond, Sarah Young, Qiandong Zeng, Jenica Abrudan, Francisca C. Almeida, Nieves Ayllón, Ketaki Bhide, Brooke W. Bissinger, Elena Bonzón‐Kulichenko, Steven D. Buckingham, Daniel R. Caffrey, Melissa J. Caimano, Vincent Croset, Timothy Driscoll, Don Gilbert, Joseph J. Gillespie, Gloria I. Giraldo-Calderón, Jeffrey M. Grabowski, David D. Jiang, Sayed M.S. Khalil, Dong‐Hun Kim, Katherine M. Kocan, Juraj Koči, Richard Kühn, Timothy J. Kurtti, Kennedy R. Lees, Emma G. Lang, Ryan Kennedy, Hyeogsun Kwon, Rushika Perera, Yumin Qi, Justin D. Radolf, Joyce M. Sakamoto, Alejandro Sánchez‐Gracia, Maiara S. Severo, Neal Silverman, Ladislav Šimo, Marta Tojo, Cristian Tornador, Janice P. Van Zee, Jesús Vázquez, Filipe Garrett Vieira, Margarita Villar, Adam R. Wespiser, Yunlong Yang, Jiwei Zhu, Peter Arensburger, Patricia V. Pietrantonio, Stephen C. Barker, Renfu Shao, Evgeny M. Zdobnov, Frank Hauser, Cornelis J.P. Grimmelikhuijzen, Yoonseong Park, Julio Rozas, Richard Benton, Joao H. F. Pedra, David R. Nelson, Maria Unger, José M. C. Tubío, Zhijian Tu, Hugh M. Robertson, Martin Shumway, Granger Sutton, Jennifer R. Wortman, Daniel Lawson, Stephen K. Wikel, Vishvanath Nene, Claire M. Fraser, Frank H. Collins, Bruce W. Birren, William Nelson, Elisabet Caler, Catherine A. Hill

    Published 2016
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  19. 19
    Human polymorphism at microRNAs and microRNA target sites.

    Human polymorphism at microRNAs and microRNA target sites. by Liuqing Yang, Chunru Lin, Chunyu Jin, Joy C. Yang, Bogdan Tanasă, Wenbo Wen-Hsiung Li, Daria Merkurjev, Kenneth A. Ohgi, Jie Zhang, Christopher P. Evans, Michael G. Rosenfeld, Charles E. Vejnar, Matthias Blum, Evgeny M. Zdobnov, Andrey Turchinovich, Timur R. Samatov, Alexander Tonevitsky, Barbara Burwinkel, Georg Schett, Dirk Elewaut, Iain B. McInnes, Jean‐Michel Dayer, Markus F. Neurath, Sachin Pundhir, Jan Gorodkin, Fabiola Olivieri, Maria Rita Rippo, Antonio Domenico Procopio, Francesca Fazioli, Lukas T. Jeker, Xuyu Zhou, Robert Blelloch, Jeffrey A. Bluestone, Claudiane Guay, Romano Regazzi, Roopali Gandhi, Brian C. Healy, Taha Gholipour, Svetlana Egorova, Alexander Musallam, Mohammad Shuja Hussain, Parham Nejad, Bonny Patel, Hillary Hei, Samia J. Khoury, Francisco J. Quintana, Pia Kivisäkk, Tanuja Chitnis, Howard L. Weiner, Yun Deng, Jian Zhao, Daisuke Sakurai, Kenneth M. Kaufman, Jeffrey C. Edberg, Robert P. Kimberly, Diane L. Kamen, Gary S. Gilkeson, Chaim O. Jacob, R. Hal Scofield, Carl D. Langefeld, Jennifer A. Kelly, Rosalind Ramsey‐Goldman, Michelle Petri, John D. Reveille, Luis M. Vilá, Graciela S. Alarcón, Timothy J. Vyse, Bernardo A. Pons‐Estel, Barry I. Freedman, Patrick M. Gaffney, Kathy Moser Sivils, Judith A. James, Peter K. Gregersen, Juan‐Manuel Anaya, Timothy B. Niewold, Joan T. Merrill, Lindsey A. Criswell, Anne M. Stevens, Susan A. Boackle, Rita M. Cantor, Weiling Chen, Jeniffer M. Grossman, Bevra H. Hahn, John B. Harley, Marta E. Alarcón‐Riquelme, Elizabeth E. Brown, Betty P. Tsao, Susan Carpenter, Maninjay Atianand, Daniel Andrew Aiello, Emiliano P. Ricci, Pallavi Gandhi, Lisa L. Hall, Meg Byron, Brian G. Monks, Meabh Henry-Bezy, Jeanne B.Lawrence, Luke O'neill, Melissa J. Moore, Daniel R. Caffrey

    Published 2013
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