Search Results - Daniel Bottomly

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  1. 1
    Identification of β-catenin binding regions in colon cancer cells using ChIP-Seq

    Identification of β-catenin binding regions in colon cancer cells using ChIP-Seq by Daniel Bottomly, Sydney L. Kyler, Shannon K. McWeeney, Gregory S. Yochum

    Published 2010
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  2. 2
    Utilizing RNA-Seq data for <i>de novo</i> coexpression network inference

    Utilizing RNA-Seq data for <i>de novo</i> coexpression network inference by Ovidiu D. Iancu, Sunita Kawane, Daniel Bottomly, Robert P. Searles, Robert Hitzemann, Shannon K. McWeeney

    Published 2012
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  3. 3
    Genes, behavior and next‐generation <scp>RNA</scp> sequencing

    Genes, behavior and next‐generation <scp>RNA</scp> sequencing by R. Hitzemann, Daniel Bottomly, Priscila Darakjian, Nicole A. R. Walter, Ovidiu D. Iancu, Robert P. Searles, Beth Wilmot, Shannon K. McWeeney

    Published 2012
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  4. 4
    Integrated analysis of patient samples identifies biomarkers for venetoclax efficacy and combination strategies in acute myeloid leukemia

    Integrated analysis of patient samples identifies biomarkers for venetoclax efficacy and combination strategies in acute myeloid leukemia by Haijiao Zhang, Yusuke Nakauchi, Thomas Köhnke, Melissa Stafford, Daniel Bottomly, Rozario Thomas, Beth Wilmot, Shannon K. McWeeney, Ravindra Majeti, Jeffrey W. Tyner

    Published 2020
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  5. 5
    Androgen Receptor Promotes Ligand-Independent Prostate Cancer Progression through c-Myc Upregulation

    Androgen Receptor Promotes Ligand-Independent Prostate Cancer Progression through c-Myc Upregulation by Lina Gao, Jacob Schwartzman, Angela Gibbs, Robert Lisac, Richard Kleinschmidt, Beth Wilmot, Daniel Bottomly, Ilsa M. Coleman, Peter S. Nelson, Shannon K. McWeeney, Joshi J. Alumkal

    Published 2013
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  6. 6
    Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays

    Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays by Daniel Bottomly, Nicole A. R. Walter, Jessica Ezzell Hunter, Priscila Darakjian, Sunita Kawane, Kari J. Buck, Robert P. Searles, Michael A. Mooney, Shannon K. McWeeney, Robert Hitzemann

    Published 2011
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  7. 7
    Expression Quantitative Trait Loci for Extreme Host Response to Influenza A in Pre-Collaborative Cross Mice

    Expression Quantitative Trait Loci for Extreme Host Response to Influenza A in Pre-Collaborative Cross Mice by Daniel Bottomly, Martin T. Ferris, Lauri D. Aicher, Elizabeth Rosenzweig, Alan C. Whitmore, David L. Aylor, Bart L. Haagmans, Lisa E. Gralinski, Birgit Bradel-Tretheway, Janine T. Bryan, David W. Threadgill, Fernando Pardo‐Manuel de Villena, Ralph S. Baric, Michael G. Katze, Mark T. Heise, Shannon K. McWeeney

    Published 2012
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  8. 8
    Comparison and validation of the 2022 European LeukemiaNet guidelines in acute myeloid leukemia

    Comparison and validation of the 2022 European LeukemiaNet guidelines in acute myeloid leukemia by Curtis A. Lachowiez, Nicola Long, Jennifer N. Saultz, Arpita Gandhi, Laura F. Newell, Brandon Hayes‐Lattin, Richard T. Maziarz, Jessica T. Leonard, Daniel Bottomly, Shannon K. McWeeney, Jennifer Dunlap, Richard D. Press, Gabrielle Meyers, Ronan Swords, Rachel J. Cook, Jeffrey W. Tyner, Brian J. Druker, Elie Traer

    Published 2022
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  9. 9
    Adaptive Responses to PARP Inhibition Predict Response to Olaparib and Durvalumab: Multi-omic Analysis of Serial Biopsies in the AMTEC Trial

    Adaptive Responses to PARP Inhibition Predict Response to Olaparib and Durvalumab: Multi-omic Analysis of Serial Biopsies in the AMTEC Trial by Zahi Mitri, Allison Creason, Jayne M. Stommel, Daniel Bottomly, Tugba Y. Ozmen, Matthew J. Rames, Furkan Ozmen, Bo Young Jeong, Natalia Lukashchuk, Jack Ashton, Jeong Youn Lim, Shamilene Sivagnanam, Konjit Betra, Jinho Lee, Marilyne Labrie, Lisa M. Coussens, Christopher L. Corless, Shannon K. McWeeney, Gordon B. Mills

    Published 2024
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  10. 10
    Oncogenic<i>CSF3R</i>Mutations in Chronic Neutrophilic Leukemia and Atypical CML

    Oncogenic<i>CSF3R</i>Mutations in Chronic Neutrophilic Leukemia and Atypical CML by Julia E. Maxson, Jason Gotlib, Daniel A. Pollyea, Angela G. Fleischman, Anupriya Agarwal, Christopher A. Eide, Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney, Cristina E. Tognon, J. Blake Pond, Robert H. Collins, Basem S. Goueli, Stephen T. Oh, Michael W. Deininger, Bill H. Chang, Marc Loriaux, Brian J. Druker, Jeffrey W. Tyner

    Published 2013
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  11. 11
    Targeting CCL2/CCR2 Signaling Overcomes MEK Inhibitor Resistance in Acute Myeloid Leukemia

    Targeting CCL2/CCR2 Signaling Overcomes MEK Inhibitor Resistance in Acute Myeloid Leukemia by Rucha V. Modak, Katia G. de Oliveira Rebola, John McClatchy, Mona Mohammadhosseini, Alisa Damnernsawad, Stephen E. Kurtz, Christopher A. Eide, Guanming Wu, Ted Laderas, Tamilla Nechiporuk, Marina Gritsenko, Joshua Hansen, Chelsea Hutchinson, Sara J.C. Gosline, Paul Piehowski, Daniel Bottomly, Nicholas J. Short, Karin Rodland, Shannon K. McWeeney, Jeffrey W. Tyner, Anupriya Agarwal

    Published 2024
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  12. 12
    Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross

    Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross by Martin T. Ferris, David L. Aylor, Daniel Bottomly, Alan C. Whitmore, Lauri D. Aicher, Timothy A. Bell, Birgit Bradel-Tretheway, Janine T. Bryan, Ryan J Buus, Lisa E. Gralinski, Bart L. Haagmans, Leonard McMillan, Darla R. Miller, Elizabeth Rosenzweig, William Valdar, Jeremy Wang, Gary A. Churchill, David W. Threadgill, Shannon K. McWeeney, Michael G. Katze, Fernando Pardo‐Manuel de Villena, Ralph S. Baric, Mark T. Heise

    Published 2013
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  13. 13
    Identification and prioritization of myeloid malignancy germline variants in a large cohort of adult patients with AML

    Identification and prioritization of myeloid malignancy germline variants in a large cohort of adult patients with AML by Fei Yang, Nicola Long, Tauangtham Anekpuritanang, Daniel Bottomly, Jonathan C. Savage, Tiffany Lee, Jose Solis‐Ruiz, Uma Borate, Beth Wilmot, Cristina E. Tognon, Allison M. Bock, Daniel A. Pollyea, Saikripa Radhakrishnan, Srinidhi Radhakrishnan, Prapti A. Patel, Robert H. Collins, Srinivas K. Tantravahi, Michael W. Deininger, Guang Fan, Brian J. Druker, Ujwal Shinde, Jeffrey W. Tyner, Richard D. Press, Shannon K. McWeeney, Anupriya Agarwal

    Published 2021
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  14. 14
    Clinical resistance to crenolanib in acute myeloid leukemia due to diverse molecular mechanisms

    Clinical resistance to crenolanib in acute myeloid leukemia due to diverse molecular mechanisms by Haijiao Zhang, Samantha L. Savage, Anna Reister Schultz, Daniel Bottomly, Libbey White, Erik Segerdell, Beth Wilmot, Shannon K. McWeeney, Christopher A. Eide, Tamilla Nechiporuk, Amy Carlos, Richard N. Henson, Chenwei Lin, Robert P. Searles, Hoang Ho, Yee Ling Lam, Richard S. Sweat, Courtney A. Follit, Vinay Jain, Evan Lind, Gautam Borthakur, Guillermo Garcia‐Manero, Farhad Ravandi, Hagop M. Kantarjian, Jorge E. Cortés, Robert H. Collins, Daelynn R. Buelow, Sharyn D. Baker, Brian J. Druker, Jeffrey W. Tyner

    Published 2019
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  15. 15
    The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance

    The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance by Sunil K. Joshi, Tamilla Nechiporuk, Daniel Bottomly, Paul Piehowski, Julie A. Reisz, Janét Pittsenbarger, Andy Kaempf, Sara J.C. Gosline, Yi-Ting Wang, Joshua Hansen, Marina Gritsenko, Chelsea Hutchinson, Karl Weitz, Jamie Moon, Francesca Cendali, Thomas Fillmore, Chia‐Feng Tsai, Athena Schepmoes, Tujin Shi, Osama A. Arshad, Jason McDermott, Özgün Babur, Kevin Watanabe‐Smith, Emek Demir, Angelo D’Alessandro, Tao Liu, Cristina E. Tognon, Jeffrey W. Tyner, Shannon K. McWeeney, Karin Rodland, Brian J. Druker, Elie Traer

    Published 2021
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  16. 16
    Genomic landscape of neutrophilic leukemias of ambiguous diagnosis

    Genomic landscape of neutrophilic leukemias of ambiguous diagnosis by Haijiao Zhang, Beth Wilmot, Daniel Bottomly, Kim-Hien T. Dao, Emily A. Stevens, Christopher A. Eide, Vishesh Khanna, Angela Rofelty, Samantha L. Savage, Anna Reister Schultz, Nicola Long, Libbey White, Amy Carlos, Rachel Henson, Chenwei Lin, Robert P. Searles, Robert H. Collins, Daniel J. DeAngelo, Michael W. Deininger, Tamara Dunn, Hein Than, Marlise R. Luskin, Bruno C. Medeiros, Stephen T. Oh, Daniel A. Pollyea, David P. Steensma, Richard M. Stone, Brian J. Druker, Shannon K. McWeeney, Julia E. Maxson, Jason Gotlib, Jeffrey W. Tyner

    Published 2019
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  17. 17
    Multiomic profiling identifies predictors of survival in African American patients with acute myeloid leukemia

    Multiomic profiling identifies predictors of survival in African American patients with acute myeloid leukemia by Andrew Stiff, Maarten Fornerod, Bailee Kain, Deedra Nicolet, Benjamin Kelly, Katherine Miller, Krzysztof Mrózek, Isaiah Boateng, Audrey Bollas, Elizabeth A.R. Garfinkle, O. M. Momoh, F A Fasola, H.O. Olawumi, Nuria Mencia-Trinchant, Jean F. Kloppers, Anne‐Cecilia van Marle, Eileen Hu, Saranga Wijeratne, Gregory Wheeler, Christopher J. Walker, Jill Buss, Adrienne Heyrosa, Helee Desai, Andrea Laganson, Ethan Hamp, Yazan Abu-Shihab, Hasan Abaza, Parker Kronen, Sidharth Sen, Megan Johnstone, K. R. Quinn, Ben Wronowski, Erin Hertlein, Linde A. Miles, Alice S. Mims, Christopher C. Oakes, James S. Blachly, Karilyn Larkin, Bethany L. Mundy-Bosse, Andrew J. Carroll, Bayard L. Powell, Jonathan E. Kolitz, Richard M. Stone, Cassandra Duarte, Diana Abbott, Maria L. Amaya, Craig T. Jordan, Geoffrey L. Uy, Wendy Stock, Kellie J. Archer, Electra D. Paskett, Monica L. Guzman, Ross L. Levine, Kamal Menghrajani, Debyani Chakravarty, Michael F. Berger, Daniel Bottomly, Shannon K. McWeeney, Jeffrey W. Tyner, John C. Byrd, Nathan Salomonis, H. Leighton Grimes, Elaine R. Mardis, Ann‐Kathrin Eisfeld

    Published 2024
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  18. 18
    Functional genomic landscape of acute myeloid leukaemia

    Functional genomic landscape of acute myeloid leukaemia by Jeffrey W. Tyner, Cristina E. Tognon, Daniel Bottomly, Beth Wilmot, Stephen E. Kurtz, Samantha L. Savage, Nicola Long, Anna Reister Schultz, Elie Traer, Melissa L. Abel, Anupriya Agarwal, Aurora Blucher, Uma Borate, Jade Bryant, Russell T. Burke, Amy Carlos, Richie Carpenter, Joseph Carroll, Bill H. Chang, Cody Coblentz, Amanda d’Almeida, Rachel J. Cook, Alexey V. Danilov, Kim-Hien T. Dao, Michie Degnin, Deirdre DeVine, James Dibb, David K. Edwards, Christopher A. Eide, Isabel English, Jason Glover, Rachel Henson, Hibery Ho, Abdusebur Jemal, Kara Johnson, Ryan C. Johnson, Brian Junio, Andy Kaempf, Jessica T. Leonard, Chenwei Lin, Selina Qiuying Liu, Pierrette Lo, Marc Loriaux, Samuel B. Luty, Tara A. Macey, Jason D. MacManiman, Jacqueline Martinez, Motomi Mori, Dylan Nelson, Ceilidh Nichols, Jill Peters, Justin Ramsdill, Angela Rofelty, Robert Schuff, Robert P. Searles, Erik Segerdell, Rebecca L. Smith, Stephen E. Spurgeon, Tyler Sweeney, Aashis Thapa, Corinne Visser, Jake Wagner, Kevin Watanabe‐Smith, Kristen Werth, Joelle Wolf, Libbey White, Amy Yates, Haijiao Zhang, Christopher R. Cogle, Robert H. Collins, Denise C. Connolly, Michael W. Deininger, Leylah Drusbosky, Christopher S. Hourigan, Craig T. Jordan, Patricia Kropf, Tara L. Lin, Micaela Martínez, Bruno C. Medeiros, Rachel R. Pallapati, Daniel A. Pollyea, Ronan Swords, Justin M. Watts, Scott J. Weir, David L. Wiest, Ryan M. Winters, Shannon K. McWeeney, Brian J. Druker

    Published 2018
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  19. 19
    Integrative analysis of drug response and clinical outcome in acute myeloid leukemia

    Integrative analysis of drug response and clinical outcome in acute myeloid leukemia by Daniel Bottomly, Nicola Long, Anna Reister Schultz, Stephen E. Kurtz, Cristina E. Tognon, Kara Johnson, Melissa L. Abel, Anupriya Agarwal, Sammantha Avaylon, Erik Benton, Aurora Blucher, Uma Borate, Theodore P. Braun, Jordana Brown, Jade Bryant, Russell T. Burke, Amy Carlos, Bill H. Chang, Hyun Cho, Stephen Christy, Cody Coblentz, Aaron Cohen, Amanda d’Almeida, Rachel J. Cook, Alexey V. Danilov, Kim‐Hien T. Dao, Michie Degnin, James Dibb, Christopher A. Eide, Isabel English, Stuart Hagler, Heath Harrelson, Rachel Henson, Hibery Ho, Sunil K. Joshi, Brian Junio, Andy Kaempf, Yoko Kosaka, Ted Laderas, Matt Lawhead, Hyun-Jung Lee, Jessica T. Leonard, Chenwei Lin, Evan Lind, Selina Qiuying Liu, Pierrette Lo, Marc Loriaux, Samuel B. Luty, Julia E. Maxson, Tara A. Macey, Jacqueline Martinez, Jessica Minnier, Andrea Monteblanco, Motomi Mori, Quinlan Morrow, Dylan Nelson, Justin Ramsdill, Angela Rofelty, Alexandra Rogers, Kyle A. Romine, Peter Ryabinin, Jennifer N. Saultz, David A. Sampson, Samantha L. Savage, Robert Schuff, Robert P. Searles, Rebecca L. Smith, Stephen E. Spurgeon, Tyler Sweeney, Ronan Swords, Aashis Thapa, Karina Thiel-Klare, Elie Traer, Jake Wagner, Beth Wilmot, Joelle Wolf, Guanming Wu, Amy Yates, Haijiao Zhang, Christopher R. Cogle, Robert H. Collins, Michael W. Deininger, Christopher S. Hourigan, Craig T. Jordan, Tara L. Lin, Micaela Martínez, Rachel R. Pallapati, Daniel A. Pollyea, Anthony D. Pomicter, Justin M. Watts, Scott J. Weir, Brian J. Druker, Shannon K. McWeeney, Jeffrey W. Tyner

    Published 2022
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