Search Results - Cydney Nielsen

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  1. 1
    Biased Chromatin Signatures around Polyadenylation Sites and Exons

    Biased Chromatin Signatures around Polyadenylation Sites and Exons by Noah Spies, Cydney Nielsen, Richard A. Padgett, Christopher B. Burge

    Published 2009
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  2. 2
    ABySS-Explorer: Visualizing Genome Sequence Assemblies

    ABySS-Explorer: Visualizing Genome Sequence Assemblies by Cydney Nielsen, Shaun D. Jackman, İnanç Birol, Steven J.M. Jones

    Published 2009
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  3. 3
    Patterns of Intron Gain and Loss in Fungi

    Patterns of Intron Gain and Loss in Fungi by Cydney Nielsen, Brad A. Friedman, Bruce W. Birren, Christopher B. Burge, James E. Galagan

    Published 2004
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  4. 4
    Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

    Determinants of targeting by endogenous and exogenous microRNAs and siRNAs by Cydney Nielsen, Noam Shomron, Rickard Sandberg, Eran Hornstein, Jacob O. Kitzman, Christopher B. Burge

    Published 2007
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  5. 5
    Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs

    Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs by Anthony K. L. Leung, Amanda Young, Arjun Bhutkar, Grace X. Y. Zheng, Andrew Bosson, Cydney Nielsen, Phillip A. Sharp

    Published 2011
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  6. 6
    E-scape: interactive visualization of single-cell phylogenetics and cancer evolution

    E-scape: interactive visualization of single-cell phylogenetics and cancer evolution by Maia A. Smith, Cydney Nielsen, Fong Chun Chan, Andrew McPherson, Andrew Roth, Hossein Farahani, Daniel Machev, Adi Steif, Sohrab P. Shah

    Published 2017
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  7. 7
    <i>De novo</i> transcriptome assembly with ABySS

    <i>De novo</i> transcriptome assembly with ABySS by İnanç Birol, Shaun D. Jackman, Cydney Nielsen, Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J.M. Jones

    Published 2009
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  8. 8
    The Human Epigenome Browser at Washington University

    The Human Epigenome Browser at Washington University by Xin Zhou, Brett Maricque, Mingchao Xie, Daofeng Li, Vasavi Sundaram, Eric A Martin, Brian C. Koebbe, Cydney Nielsen, Martin Hirst, Peggy Farnham, Robert M. Kuhn, Jingchun Zhu, Ivan Smirnov, W. James Kent, David Haussler, Pamela A. F. Madden, J Costello, Ting Wang

    Published 2011
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  9. 9
    Conserved role of intragenic DNA methylation in regulating alternative promoters

    Conserved role of intragenic DNA methylation in regulating alternative promoters by Alika K. Maunakea, Raman P. Nagarajan, Mikhail Bilenky, Tracy Ballinger, Cletus A. D’Souza, Shaun D. Fouse, Brett Johnson, Chibo Hong, Cydney Nielsen, Yongjun Zhao, Gustavo Turecki, Allen Delaney, Richard Varhol, Nina Thiessen, Ksenya Shchors, Vivi M. Heine, David H. Rowitch, Xiaoyun Xing, Chris Fiore, Maximiliaan Schillebeeckx, Steven J.M. Jones, David Haussler, Marco A. Marra, Martin Hirst, Ting Wang, J Costello

    Published 2010
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  10. 10
    Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study

    Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study by Robert Kridel, Fong Chun Chan, Anja Mottok, Merrill Boyle, Pedro Farinha, King Tan, Barbara Meissner, Ali Bashashati, Andrew McPherson, Andrew Roth, Karey Shumansky, Damian Yap, Susana Ben‐Neriah, Jamie Rosner, Maia A. Smith, Cydney Nielsen, Eva Giné, Adèle Telenius, Daisuke Ennishi, Andrew J. Mungall, Richard A. Moore, Ryan D. Morin, Nathalie A. Johnson, Laurie H. Sehn, Thomas Tousseyn, Ahmet Doǧan, Joseph M. Connors, David W. Scott, Christian Steidl, Marco A. Marra, Randy D. Gascoyne, Sohrab P. Shah

    Published 2016
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  11. 11
    Hereditary Diffuse Gastric Cancer Syndrome

    Hereditary Diffuse Gastric Cancer Syndrome by Samantha Hansford, Pardeep Kaurah, Hector Li-Chang, Michelle Woo, Janine Senz, Hugo Pinheiro, Kasmintan A. Schrader, David F. Schaeffer, Karey Shumansky, George Zogopoulos, Teresa Almeida‐Santos, Isabel Claro, Joana Carvalho, Cydney Nielsen, Sarah Padilla, Amy Lum, Aline Talhouk, Katie Baker-Lange, Sue Richardson, I.J. Lewis, Noralane M. Lindor, Erin Pennell, Andrée MacMillan, Bridget A. Fernandez, G. Keller, Henry T. Lynch, Sohrab P. Shah, Parry Guilford, Steven Gallinger, Giovanni Corso, Franco Roviello, Carlos Caldas, Carla Oliveíra, Paul D.P. Pharoah, David G. Huntsman

    Published 2015
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  12. 12
    Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

    Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution by Peter Eirew, Adi Steif, Jaswinder Khattra, Gavin Ha, Damian Yap, Hossein Farahani, Karen A. Gelmon, Stephen Chia, Colin Mar, Adrian Wan, Emma Laks, Justina Biele, Karey Shumansky, Jamie Rosner, Andrew McPherson, Cydney Nielsen, Andrew Roth, Calvin Lefebvre, Ali Bashashati, Camila P. E. de Souza, Celia Siu, Radhouane Aniba, Jazmine Brimhall, Arusha Oloumi, Tomo Osako, Alejandra Bruna, José Luís Sandoval, Teresa Ruiz de Algara, Wendy Greenwood, Kaston Leung, Hongwei Cheng, Hui Xue, Yuzhuo Wang, Dong Lin, Andrew J. Mungall, Richard A. Moore, Yongjun Zhao, Julie Lorette, Long Nguyen, David G. Huntsman, Connie J. Eaves, Carl L. Hansen, Marco A. Marra, Carlos Caldas, Sohrab P. Shah, Samuel Aparício

    Published 2014
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  13. 13
    Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer

    Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer by Allen W. Zhang, Andrew McPherson, Katy Milne, David R. Kroeger, Phineas T. Hamilton, Alex Miranda, Tyler Funnell, Nicole S. Little, Camila P. E. de Souza, Sonya Laan, Stacey Ledoux, Dawn R. Cochrane, Jamie Lim, Winnie Yang, Andrew Roth, Maia A. Smith, Julie Ho, Kane Tse, Thomas Zeng, Inna Shlafman, Michael R. Mayo, Richard A. Moore, Henrik Failmezger, Andreas Heindl, Yi Kan Wang, Ali Bashashati, Diljot Grewal, Scott D. Brown, Daniel Lai, Adrian Wan, Cydney Nielsen, Curtis Huebner, Basile Tessier‐Cloutier, Michael S. Anglesio, Alexandre Bouchard‐Côté, Yinyin Yuan, Wyeth W. Wasserman, C. Blake Gilks, Anthony N. Karnezis, Samuel Aparício, Jessica N. McAlpine, David G. Huntsman, Robert A. Holt, Brad H. Nelson, Sohrab P. Shah

    Published 2018
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  14. 14
    The genome sequence of the filamentous fungus Neurospora crassa

    The genome sequence of the filamentous fungus Neurospora crassa by James E. Galagan, Sarah E. Calvo, Katherine A. Borkovich, Eric U. Selker, Nick D. Read, David B. Jaffe, William W. Fitzhugh, Li‐Jun Ma, Serge Smirnov, Seth Purcell, Bushra Rehman, Timothy Elkins, Reinhard Engels, Shunguang Wang, Cydney Nielsen, Jonathan A. Butler, Matthew G. Endrizzi, Dayong Qui, Peter Ianakiev, Deborah Bell‐Pedersen, Mary Anne Nelson, Margaret Werner‐Washburne, Claude P. Selitrennikoff, John Á. Kinsey, Edward L. Braun, Alex Zelter, Ulrich Schulte, Gregory O. Kothe, Gregory Jedd, Hans‐Werner Mewes, Chuck Stäben, Edward M. Marcotte, David Greenberg, Alice C. Roy, Karen Foley, Jerome W. Naylor, Nicole Stange-Thomann, Robert J. Barrett, Sante Gnerre, Michael Kamal, Manolis Kamvysselis, Evan Mauceli, C. Bielke, Stephen Rudd, Dmitrij Frishman, Svetlana Kryštofová, Carolyn G. Rasmussen, Robert L. Metzenberg, David D. Perkins, Scott Kroken, Carlo Cogoni, Giuseppe Macino, David Catcheside, Weixi Li, Robert Pratt, Stephen A. Osmani, Colin P. C. DeSouza, Louise Glass, Marc J. Orbach, J. Andrew Berglund, Rodger B. Voelker, Oded Yarden, Michael Plamann, Stephan Seiler, Jay Dunlap, Alan Radford, Rodolfo Aramayo, Donald O. Natvig, Lisa A. Alex, Gertrud Mannhaupt, Daniel J. Ebbole, Michael Freitag, Ian T. Paulsen, Matthew S. Sachs, Eric S. Lander, Chad Nusbaum, Bruce W. Birren

    Published 2003
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  15. 15
    Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing

    Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing by Emma Laks, Andrew McPherson, Hans Zahn, Daniel Lai, Adi Steif, Jazmine Brimhall, Justina Biele, Beixi Wang, Tehmina Masud, Jerome Ting, Diljot Grewal, Cydney Nielsen, Samantha Leung, Viktoria Bojilova, Maia A. Smith, Oleg Golovko, Steven S.S. Poon, Peter Eirew, Farhia Kabeer, Teresa Ruiz de Algara, So Ra Lee, M. Jafar Taghiyar, Curtis Huebner, Jessica Ngo, Tim Hon Man Chan, Spencer Vatrt-Watts, Pascale Walters, Nafis Abrar, Sophia Chan, Matt Wiens, Lauren Martin, R. Wilder Scott, T. Michael Underhill, Elizabeth A. Chavez, Christian Steidl, Daniel Da Costa, Yussanne Ma, Robin Coope, Richard Corbett, Stephen Pleasance, Richard A. Moore, Andrew J. Mungall, Colin Mar, Fergus Cafferty, Karen A. Gelmon, Stephen Chia, Marco A. Marra, Carl L. Hansen, Sohrab P. Shah, Samuel Aparício, Gregory J. Hannon, Giorgia Battistoni, Dario Bressan, Ian G. Cannell, Hannah Casbolt, Cristina Jauset, Tatjana Kovačević, Claire M. Mulvey, Fiona Nugent, Marta Ribes, Isabella Pearsall, Fatime Qosaj, Kirsty Sawicka, Sophia A. Wild, Elena Williams, Samuel Aparício, Emma Laks, Yangguang Li, Ciara H. O’Flanagan, Austin Smith, Teresa Ruíz, Shankar Balasubramanian, Maximillian Lee, Bernd Bodenmiller, Marcel Burger, Laura Kuett, Sandra Tietscher, Jonas Windager, Edward S. Boyden, Shahar Alon, Yi Cui, Amauche Emenari, Dan Goodwin, Emmanouil D. Karagiannis, Anubhav Sinha, Asmamaw T. Wassie, Carlos Caldas, Alejandra Bruna, Maurizio Callari, Wendy Greenwood, Giulia Lerda, Yaniv Lubling, Alastair Marti, Oscar M. Rueda, Abigail Shea, Opusunju Boma Harris, Robby Becker, Flaminia Grimaldi, Suvi Harris, Sara Lisa Vogl

    Published 2019
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