Search Results - Creason, Allison

Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus by Creason, Allison L., Davis, Edward W., Putnam, Melodie L., Vandeputte, Olivier M., Chang, Jeff H.

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Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine by Gu, Qiang, Kumar, Anup, Bray, Simon, Creason, Allison, Khanteymoori, Alireza, Jalili, Vahid, Grüning, Björn, Goecks, Jeremy

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Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum by Kimbrel, Jeffrey A., Thomas, William J., Jiang, Yuan, Creason, Allison L., Thireault, Caitlin A., Sachs, Joel L., Chang, Jeff H.

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Phytopathogenic Rhodococcus Have Diverse Plasmids With Few Conserved Virulence Functions by Savory, Elizabeth A., Weisberg, Alexandra J., Stevens, Danielle M., Creason, Allison L., Fuller, Skylar L., Pearce, Emma M., Chang, Jeff H.

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An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6 by Kimbrel, Jeffrey A, Givan, Scott A, Halgren, Anne B, Creason, Allison L, Mills, Dallice I, Banowetz, Gary M, Armstrong, Donald J, Chang, Jeff H

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The Pseudomonas syringae Type III Effector HopG1 Induces Actin Remodeling to Promote Symptom Development and Susceptibility during Infection(1) by Shimono, Masaki, Lu, Yi-Ju, Porter, Katie, Kvitko, Brian H., Henty-Ridilla, Jessica, Creason, Allison, He, Sheng Yang, Chang, Jeff H., Staiger, Christopher J., Day, Brad

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Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges by Ellrott, Kyle, Buchanan, Alex, Creason, Allison, Mason, Michael, Schaffter, Thomas, Hoff, Bruce, Eddy, James, Chilton, John M., Yu, Thomas, Stuart, Joshua M., Saez-Rodriguez, Julio, Stolovitzky, Gustavo, Boutros, Paul C., Guinney, Justin

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Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management by Savory, Elizabeth A, Fuller, Skylar L, Weisberg, Alexandra J, Thomas, William J, Gordon, Michael I, Stevens, Danielle M, Creason, Allison L, Belcher, Michael S, Serdani, Maryna, Wiseman, Michele S, Grünwald, Niklaus J, Putnam, Melodie L, Chang, Jeff H

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Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management by Savory, Elizabeth A, Fuller, Skylar L, Weisberg, Alexandra J, Thomas, William J, Gordon, Michael I, Stevens, Danielle M, Creason, Allison L, Belcher, Michael S, Serdani, Maryna, Wiseman, Michele S, Grünwald, Niklaus J, Putnam, Melodie L, Chang, Jeff H

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Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci by Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis, Edward W., Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., Jaziri, Mondher El, Loper, Joyce E., Mahmud, Taifo, Chang, Jeff H.

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Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics by Li, Allen, Keck, Jamie M., Parmar, Swapnil, Patterson, Janice, Labrie, Marilyne, Creason, Allison L., Johnson, Brett E., Downey, Molly, Thomas, George, Beadling, Carol, Heiser, Laura M., Kolodzie, Annette, Guimaraes, Alexander R., Corless, Christopher L., Gray, Joe W., Mills, Gordon B., Bergan, Raymond C., Mitri, Zahi I.

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Preconception Carrier Screening by Genome Sequencing: Results from the Clinical Laboratory by Punj, Sumit, Akkari, Yassmine, Huang, Jennifer, Yang, Fei, Creason, Allison, Pak, Christine, Potter, Amiee, Dorschner, Michael O., Nickerson, Deborah A., Robertson, Peggy D., Jarvik, Gail P., Amendola, Laura M., Schleit, Jennifer, Simpson, Dana Kostiner, Rope, Alan F., Reiss, Jacob, Kauffman, Tia, Gilmore, Marian J., Himes, Patricia, Wilfond, Benjamin, Goddard, Katrina A.B., Richards, C. Sue

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Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies by Labrie, Marilyne, Li, Allen, Creason, Allison, Betts, Courtney, Keck, Jamie, Johnson, Brett, Sivagnanam, Shamilene, Boniface, Christopher, Ma, Hongli, Blucher, Aurora, Chang, Young Hwan, Chin, Koei, Vuky, Jacqueline, Guimaraes, Alexander R., Downey, Molly, Lim, Jeong Youn, Gao, Lina, Siex, Kiara, Parmar, Swapnil, Kolodzie, Annette, Spellman, Paul T., Goecks, Jeremy, Coussens, Lisa M., Corless, Christopher L., Bergan, Raymond, Gray, Joe W., Mills, Gordon B., Mitri, Zahi I.

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MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging by Schapiro, Denis, Sokolov, Artem, Yapp, Clarence, Chen, Yu-An, Muhlich, Jeremy L., Hess, Joshua, Creason, Allison L., Nirmal, Ajit J., Baker, Gregory J., Nariya, Maulik K., Lin, Jia-Ren, Maliga, Zoltan, Jacobson, Connor A., Hodgman, Matthew W., Ruokonen, Juha, Farhi, Samouil L., Abbondanza, Domenic, McKinley, Eliot T., Persson, Daniel, Betts, Courtney, Sivagnanam, Shamilene, Regev, Aviv, Goecks, Jeremy, Coffey, Robert J., Coussens, Lisa M., Santagata, Sandro, Sorger, Peter K.

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A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery by Creason, Allison, Haan, David, Dang, Kristen, Chiotti, Kami E., Inkman, Matthew, Lamb, Andrew, Yu, Thomas, Hu, Yin, Norman, Thea C., Buchanan, Alex, van Baren, Marijke J., Spangler, Ryan, Rollins, M. Rick, Spellman, Paul T., Rozanov, Dmitri, Zhang, Jin, Maher, Christopher A., Caloian, Cristian, Watson, John D., Uhrig, Sebastian, Haas, Brian J., Jain, Miten, Akeson, Mark, Ahsen, Mehmet Eren, Stolovitzky, Gustavo, Guinney, Justin, Boutros, Paul C., Stuart, Joshua M., Ellrott, Kyle

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Phase 1b dose expansion and translational analyses of olaparib in combination with capivasertib in recurrent endometrial, triple negative breast, and ovarian cancer by Westin, Shannon N., Labrie, Marilyne, Litton, Jennifer K., Blucher, Aurora, Fang, Yong, Vellano, Christopher P., Marszalek, Joseph R., Feng, Ningping, Ma, XiaoYan, Creason, Allison, Fellman, Bryan, Yuan, Ying, Lee, Sanghoon, Kim, Tae-Beom, Liu, Jinsong, Chelariu-Raicu, Anca, Chen, Tsun Hsuan, Kabil, Nashwa, Soliman, Pamela T., Frumovitz, Michael, Schmeler, Katheleen M., Jazaeri, Amir, Lu, Karen H., Murthy, Rashmi, Meyer, Larissa A., Sun, Charlotte C., Sood, Anil K., Coleman, Robert L., Mills, Gordon B.

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An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer by Johnson, Brett E., Creason, Allison L., Stommel, Jayne M., Keck, Jamie M., Parmar, Swapnil, Betts, Courtney B., Blucher, Aurora, Boniface, Christopher, Bucher, Elmar, Burlingame, Erik, Camp, Todd, Chin, Koei, Eng, Jennifer, Estabrook, Joseph, Feiler, Heidi S., Heskett, Michael B., Hu, Zhi, Kolodzie, Annette, Kong, Ben L., Labrie, Marilyne, Lee, Jinho, Leyshock, Patrick, Mitri, Souraya, Patterson, Janice, Riesterer, Jessica L., Sivagnanam, Shamilene, Somers, Julia, Sudar, Damir, Thibault, Guillaume, Weeder, Benjamin R., Zheng, Christina, Nan, Xiaolin, Thompson, Reid F., Heiser, Laura M., Spellman, Paul T., Thomas, George, Demir, Emek, Chang, Young Hwan, Coussens, Lisa M., Guimaraes, Alexander R., Corless, Christopher, Goecks, Jeremy, Bergan, Raymond, Mitri, Zahi, Mills, Gordon B., Gray, Joe W.

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