Search Results - Cory C. Funk

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  1. 1
    iREAD: a tool for intron retention detection from RNA-seq data

    iREAD: a tool for intron retention detection from RNA-seq data by Hong-Dong Li, Cory C. Funk, Nathan D. Price

    Published 2020
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  2. 2
    Estrogen down-regulation of the corepressor N-CoR: Mechanism and implications for estrogen derepression of N-CoR-regulated genes

    Estrogen down-regulation of the corepressor N-CoR: Mechanism and implications for estrogen derepression of N-CoR-regulated genes by Jonna Frasor, Jeanne M. Danes, Cory C. Funk, Benita S. Katzenellenbogen

    Published 2005
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  3. 3
    The viral hypothesis: how herpesviruses may contribute to Alzheimer’s disease

    The viral hypothesis: how herpesviruses may contribute to Alzheimer’s disease by Michael Wainberg, Tain Luquez, David M. Koelle, Ben Readhead, Christine Johnston, Martin Darvas, Cory C. Funk

    Published 2021
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  4. 4
    Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development

    Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development by Kathleen Pestal, Cory C. Funk, Jessica M. Snyder, Nathan D. Price, Piper M. Treuting, Daniel B. Stetson

    Published 2015
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  5. 5
    Estrogen Dendrimer Conjugates that Preferentially Activate Extranuclear, Nongenomic Versus Genomic Pathways of Estrogen Action

    Estrogen Dendrimer Conjugates that Preferentially Activate Extranuclear, Nongenomic Versus Genomic Pathways of Estrogen Action by William R. Harrington, Sung Hoon Kim, Cory C. Funk, Zeynep Madak‐Erdogan, Rachel Schiff, John A. Katzenellenbogen, Benita S. Katzenellenbogen

    Published 2005
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  6. 6
    Fokker-Planck diffusion maps of microglial transcriptomes reveal radial differentiation into substates associated with Alzheimer’s pathology

    Fokker-Planck diffusion maps of microglial transcriptomes reveal radial differentiation into substates associated with Alzheimer’s pathology by Andrew Baumgartner, Max Robinson, Nilüfer Ertekin‐Taner, Todd E. Golde, Suman Jayadev, Sui Huang, Jennifer Hadlock, Cory C. Funk

    Published 2025
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  7. 7
    Ion channel expression patterns in glioblastoma stem cells with functional and therapeutic implications for malignancy

    Ion channel expression patterns in glioblastoma stem cells with functional and therapeutic implications for malignancy by Julia Pollak, Goutam Karan, Cory C. Funk, Sonali Arora, Eunjee Lee, Jun Zhu, Nathan D. Price, Patrick J. Paddison, Jan‐Marino Ramirez, Robert Rostomily

    Published 2017
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  8. 8
    A Cell-Surface Membrane Protein Signature for Glioblastoma

    A Cell-Surface Membrane Protein Signature for Glioblastoma by Dhimankrishna Ghosh, Cory C. Funk, Juan Caballero-Pérez, Nameeta Shah, Katherine Rouleau, John C. Earls, Liliana Soroceanu, Greg Foltz, Charles Cobbs, Nathan D. Price, Leroy Hood

    Published 2017
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  9. 9
    Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders

    Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders by Jocelynn R. Pearl, Carlo Colantuoni, Dani E. Bergey, Cory C. Funk, Paul Shannon, B. BASU, Alex M. Casella, Rediet T. Oshone, Leroy Hood, Nathan D. Price, Seth A. Ament

    Published 2019
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  10. 10
    Risk factors for severe COVID-19 differ by age for hospitalized adults

    Risk factors for severe COVID-19 differ by age for hospitalized adults by Sevda Molani, Patricia V. Hernandez, Ryan Roper, Venkata R. Duvvuri, Andrew Baumgartner, Jason D. Goldman, Nilüfer Ertekin‐Taner, Cory C. Funk, Nathan D. Price, Noa Rappaport, Jennifer Hadlock

    Published 2022
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  11. 11
    Motor neuron loss and neuroinflammation in a model of α-synuclein-induced neurodegeneration

    Motor neuron loss and neuroinflammation in a model of α-synuclein-induced neurodegeneration by Zachary A. Sorrentino, Yuxing Xia, Cory C. Funk, Cara J. Riffe, Nicola J. Rutherford, Carolina Ceballos Diaz, Amanda N. Sacino, Nathan D. Price, Todd E. Golde, Benoit I. Giasson, Paramita Chakrabarty

    Published 2018
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  12. 12
    Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus

    Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus by Ben Readhead, Jean‐Vianney Haure‐Mirande, Cory C. Funk, Matthew A. Richards, Paul Shannon, Vahram Haroutunian, Mary Sano, Winnie S. Liang, Noam D. Beckmann, Nathan D. Price, Eric M. Reiman, Eric E. Schadt, Michelle E. Ehrlich, Sam Gandy, Joel T. Dudley

    Published 2018
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  13. 13
    IL-10 Alters Immunoproteostasis in APP Mice, Increasing Plaque Burden and Worsening Cognitive Behavior

    IL-10 Alters Immunoproteostasis in APP Mice, Increasing Plaque Burden and Worsening Cognitive Behavior by Paramita Chakrabarty, Andrew Li, Carolina Ceballos‐Diaz, James A. Eddy, Cory C. Funk, Brenda D. Moore, Nadia DiNunno, Awilda M. Rosario, Pedro E. Cruz, Christophe Verbeeck, Amanda N. Sacino, Sarah Nix, Christopher Janus, Nathan D. Price, Pritam Das, Todd E. Golde

    Published 2015
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  14. 14
    Single cell transcriptomes and multiscale networks from persons with and without Alzheimer’s disease

    Single cell transcriptomes and multiscale networks from persons with and without Alzheimer’s disease by Qi Wang, Jerry Antone, Eric Alsop, Rebecca Reiman, Cory C. Funk, Jaroslav Bendl, Joel T. Dudley, Winnie S. Liang, Timothy L. Karr, Panos Roussos, David A. Bennett, Philip L. De Jager, Geidy E. Serrano, Thomas G. Beach, Kendall Van Keuren‐Jensen, Diego Mastroeni, Eric M. Reiman, Ben Readhead

    Published 2024
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  15. 15
    Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types

    Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types by Cory C. Funk, Alex M. Casella, Segun Jung, Matthew A. Richards, Álex Rodríguez, Paul Shannon, Rory M. Donovan-Maiye, Ben Heavner, Kyle Chard, Yukai Xiao, Gustavo Glusman, Nilüfer Ertekin‐Taner, Todd E. Golde, Arthur W. Toga, Leroy Hood, John D. Van Horn, Carl Kesselman, Ian Foster, Ravi Madduri, Nathan D. Price, Seth A. Ament

    Published 2020
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  16. 16
    Integrative functional genomic analysis of intron retention in human and mouse brain with Alzheimer's disease

    Integrative functional genomic analysis of intron retention in human and mouse brain with Alzheimer's disease by Hong‐Dong Li, Cory C. Funk, Karen N. McFarland, Eric B. Dammer, Mariet Allen, Minerva M. Carrasquillo, Yona Levites, Paramita Chakrabarty, Jeremy D. Burgess, Xue Wang, Dennis W. Dickson, Nicholas T. Seyfried, Duc M. Duong, James J. Lah, Steven G. Younkin, Allan I. Levey, Gilbert S. Omenn, Nilüfer Ertekin‐Taner, Todd E. Golde, Nathan D. Price

    Published 2021
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  17. 17
    Divergent brain gene expression patterns associate with distinct cell-specific tau neuropathology traits in progressive supranuclear palsy

    Divergent brain gene expression patterns associate with distinct cell-specific tau neuropathology traits in progressive supranuclear palsy by Mariet Allen, Xue Wang, Daniel Serie, Samantha L. Strickland, Jeremy D. Burgess, Shunsuke Koga, Curtis Younkin, Thuy Nguyen, Kimberly G. Malphrus, Sarah Lincoln, Melissa Alamprese, Kuixi Zhu, Rui Chang, Minerva M. Carrasquillo, Naomi Kouri, Melissa E. Murray, Joseph S. Reddy, Cory C. Funk, Nathan D. Price, Todd E. Golde, Steven G. Younkin, Yan W. Asmann, Julia E. Crook, Dennis W. Dickson, Nilüfer Ertekin‐Taner

    Published 2018
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  18. 18
    A genome scale transcriptional regulatory model of the human placenta

    A genome scale transcriptional regulatory model of the human placenta by Alison G. Paquette, Kylia Ahuna, Yeon Mi Hwang, Jocelynn R. Pearl, Hanna Liao, Paul Shannon, Leena Kadam, Samantha Lapehn, Matthew Bucher, Ryan Roper, Cory C. Funk, James W. MacDonald, Theo K. Bammler, Priyanka Baloni, Heather Brockway, W. Alex Mason, Nicole R. Bush, Kaja Z. LeWinn, Catherine J. Karr, J Stamatoyannopoulos, Louis J. Muglia, Helen Jones, Yoel Sadovsky, Leslie Myatt, Sheela Sathyanarayana, Nathan D. Price

    Published 2024
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  19. 19
    TLR5 decoy receptor as a novel anti-amyloid therapeutic for Alzheimer’s disease

    TLR5 decoy receptor as a novel anti-amyloid therapeutic for Alzheimer’s disease by Paramita Chakrabarty, Andrew Li, Thomas B. Ladd, Michael R. Strickland, Emily J. Koller, Jeremy D. Burgess, Cory C. Funk, Pedro E. Cruz, Mariet Allen, Mariya Yaroshenko, Xue Wang, Curtis Younkin, Joseph S. Reddy, Benjamin Lohrer, Leonie S. Mehrke, Brenda D. Moore, Xuefei Liu, Carolina Ceballos‐Diaz, Awilda M. Rosario, Christopher Medway, Christopher Janus, Hongdong Li, Dennis W. Dickson, Benoit I. Giasson, Nathan D. Price, Steven G. Younkin, Nilüfer Ertekin‐Taner, Todd E. Golde

    Published 2018
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  20. 20
    Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer’s Disease

    Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer’s Disease by Priyanka Baloni, Cory C. Funk, Jingwen Yan, James T. Yurkovich, Alexandra Kueider‐Paisley, Kwangsik Nho, Almut Heinken, Wei Jia, Siamak MahmoudianDehkordi, Gregory Louie, Andrew J. Saykin, Matthias Arnold, Gabi Kastenmüller, William J. Griffiths, Ines Thiele, Rima Kaddurah‐Daouk, Nathan D. Price, Rima Kaddurah‐Daouk, Alexandra Kueider‐Paisley, Gregory Louie, P. Murali Doraiswamy, Colette Blach, Arthur Moseley, Paul M. Thompson, Siamak Mahmoudiandehkhordi, Kathleen Welsh-Balmer, Brenda L. Plassman, Andrew J. Saykin, Kwangsik Nho, Gabi Kastenmüller, Matthias Arnold, Sudeepa Bhattacharyya, Xianlin Han, Rebecca Baillie, Oliver Fiehn, Dinesh Kumar Barupal, Peter J. Meikle, Sarkis K. Mazmanian, Mitchel A. Kling, Leslie M. Shaw, John Q. Trojanowski, Jon B. Toledo, Cornelia van Duijin, Thomas Hankemier, Ines Thiele, Almut Heinken, Nathan D. Price, Cory C. Funk, Priyanka Baloni, Wei Jia, David S. Wishart, Roberta Dı́az Brinton, Rui Chang, Lindsay A. Farrer, Rhoda Au, Wendy Qiu, Peter Würtz, Lara M. Mangravite, Jan Krumsiek, John W. Newman, Bin Zhang, Herman Moreno

    Published 2020
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