Ngā hua rapu - Cornwell, MacIntosh

BlackSheep: A Bioconductor and Bioconda Package for Differential Extreme Value Analysis mā Blumenberg, Lili, Kawaler, Emily A., Cornwell, MacIntosh, Smith, Shaleigh, Ruggles, Kelly V., Fenyö, David

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Risk factors, transcriptomics, and outcomes of myocardial injury following lower extremity revascularization mā Smilowitz, Nathaniel R., Cornwell, MacIntosh, Offerman, Erik J., Rockman, Caron B., Shah, Svati H., Newman, Jonathan D., Ruggles, Kelly, Voora, Deepak, Berger, Jeffrey S.

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NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains mā Lhoumaud, Priscillia, Badri, Sana, Rodriguez-Hernaez, Javier, Sakellaropoulos, Theodore, Sethia, Gunjan, Kloetgen, Andreas, Cornwell, MacIntosh, Bhattacharyya, Sourya, Ay, Ferhat, Bonneau, Richard, Tsirigos, Aristotelis, Skok, Jane A.

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Gene Expression Signature in Patients with Symptomatic Peripheral Artery Disease mā Newman, Jonathan D., Cornwell, MacIntosh G., Zhou, Hua, Rockman, Caron, Heguy, Adriana, Suarez, Yajaira, Cheng, Henry S., Feinberg, Mark W., Hochman, Judith S., Ruggles, Kelly V., Berger, Jeffrey S.

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VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis mā Cornwell, MacIntosh, Vangala, Mahesh, Taing, Len, Herbert, Zachary, Köster, Johannes, Li, Bo, Sun, Hanfei, Li, Taiwen, Zhang, Jian, Qiu, Xintao, Pun, Matthew, Jeselsohn, Rinath, Brown, Myles, Liu, X. Shirley, Long, Henry W.

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Hydroxychloroquine is associated with lower platelet activity and improved vascular health in systemic lupus erythematosus mā Cornwell, MacIntosh Grant, Luttrell-Williams, Elliot S, Golpanian, Michael, El Bannoudi, Hanane, Myndzar, Khrystyna, Izmirly, Peter, Belmont, H Michael, Katz, Stuart, Smilowitz, Nathaniel R, Engel, Alexis, Clancy, Robert, Ruggles, Kelly, Buyon, Jill P, Berger, Jeffrey S

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Unraveling the clinicopathological features driving the emergence of ESR1 mutations in metastatic breast cancer mā Kuang, Yanan, Siddiqui, Bilal, Hu, Jiani, Pun, Matthew, Cornwell, MacIntosh, Buchwalter, Gilles, Hughes, Melissa E., Wagle, Nikhil, Kirschmeier, Paul, Jänne, Pasi A., Paweletz, Cloud P., Lin, Nancy U., Krop, Ian E., Barry, William T., Winer, Eric P., Brown, Myles, Jeselsohn, Rinath

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Embryonic transcription factor SOX9 drives breast cancer endocrine resistance mā Jeselsohn, Rinath, Cornwell, MacIntosh, Pun, Matthew, Buchwalter, Gilles, Nguyen, Mai, Bango, Clyde, Huang, Ying, Kuang, Yanan, Paweletz, Cloud, Fu, Xiaoyong, Nardone, Agostina, De Angelis, Carmine, Detre, Simone, Dodson, Andrew, Mohammed, Hisham, Carroll, Jason S., Bowden, Michaela, Rao, Prakash, Long, Henry W., Li, Fugen, Dowsett, Mitchell, Schiff, Rachel, Brown, Myles

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Allele-specific chromatin recruitment and therapeutic vulnerabilities of ESR1 activating mutations mā Jeselsohn, Rinath, Bergholz, Johann S, Pun, Matthew, Cornwell, MacIntosh, Liu, Weihan, Nardone, Agostina, Xiao, Tengfei, Li, Wei, Qiu, Xintao, Buchwalter, Gilles, Feiglin, Ariel, Abell-Hart, Kayley, Fei, Teng, Rao, Prakash, Long, Henry, Kwiatkowski, Nicholas, Zhang, Tinghu, Gray, Nathanael, Melchers, Diane, Houtman, Rene, Liu, X. Shirley, Cohen, Ofir, Wagle, Nikhil, Winer, Eric P., Zhao, Jean, Brown, Myles

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Platelets amplify endotheliopathy in COVID-19 mā Barrett, Tessa J., Cornwell, MacIntosh, Myndzar, Khrystyna, Rolling, Christina C., Xia, Yuhe, Drenkova, Kamelia, Biebuyck, Antoine, Fields, Alexander T., Tawil, Michael, Luttrell-Williams, Elliot, Yuriditsky, Eugene, Smith, Grace, Cotzia, Paolo, Neal, Matthew D., Kornblith, Lucy Z., Pittaluga, Stefania, Rapkiewicz, Amy V., Burgess, Hannah M., Mohr, Ian, Stapleford, Kenneth A., Voora, Deepak, Ruggles, Kelly, Hochman, Judith, Berger, Jeffrey S.

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Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma mā Gillette, Michael A., Satpathy, Shankha, Cao, Song, Dhanasekaran, Saravana M., Vasaikar, Suhas V., Krug, Karsten, Petralia, Francesca, Li, Yize, Liang, Wen-Wei, Reva, Boris, Krek, Azra, Ji, Jiayi, Song, Xiaoyu, Liu, Wenke, Hong, Runyu, Yao, Lijun, Blumenberg, Lili, Savage, Sara R., Wendl, Michael C., Wen, Bo, Li, Kai, Tang, Lauren C., MacMullan, Melanie A., Avanessian, Shayan C., Kane, M. Harry, Newton, Chelsea J., Cornwell, MacIntosh, Kothadia, Ramani B., Ma, Weiping, Yoo, Seungyeul, Mannan, Rahul, Vats, Pankaj, Kumar-Sinha, Chandan, Kawaler, Emily A., Omelchenko, Tatiana, Colaprico, Antonio, Geffen, Yifat, Maruvka, Yosef E., da Veiga Leprevost, Felipe, Wiznerowicz, Maciej, Gümüs, Zeynep H., Veluswamy, Rajwanth R., Hostetter, Galen, Heiman, David I., Wyczalkowski, Matthew A., Hiltke, Tara, Mesri, Mehdi, Kinsinger, Christopher R., Boja, Emily S., Omenn, Gilbert S., Chinnaiyan, Arul M., Rodriguez, Henry, Li, Qing Kay, Jewell, Scott D., Thiagarajan, Mathangi, Getz, Gad, Zhang, Bing, Fenyö, David, Ruggles, Kelly V., Cieslik, Marcin P., Robles, Ana I., Clauser, Karl R., Govindan, Ramaswamy, Wang, Pei, Nesvizhskii, Alexey I., Ding, Li, Mani, D. R., Carr, Steven A.

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Proteogenomic Characterization of Endometrial Carcinoma mā Dou, Yongchao, Kawaler, Emily A., Zhou, Daniel Cui, Gritsenko, Marina A., Huang, Chen, Blumenberg, Lili, Karpova, Alla, Petyuk, Vladislav A., Savage, Sara R., Satpathy, Shankha, LiU, Wenke, WU, Yige, Tsai, Chia-Feng, Wen, Bo, Li, Zhi, Cao, Song, Moon, Jamie, Shi, zhiao, Cornwell, MacIntosh, Wyczalkowski, Matthew A., Chu, Rosalie K., Vasaikar, Suhas, Zhou, Hua, Gao, Qingsong, Moore, Ronald J., Li, Kai, Sethuraman, Sunantha, Monroe, Matthew E., Zhao, Rui, Heiman, David, Krug, Karsten, Clauser, Karl, Kothadia, Ramani, Maruvka, Yosef, Pico, Alexander R., Oliphant, Amanda E., Hoskins, Emily L., Pugh, Samuel L., Beecroft, Sean J.I., Adams, David W., Jarman, Jonathan C., Kong, Andy, Chang, Hui-Yin, Reva, Boris, Liao, Yuxing, Rykunov, Dmitry, Colaprico, Antonio, Chen, Xi Steven, Czekański, Andrzej, Jędryka, Marcin, Matkowski, Rafaᵼ, Wiznerowicz, Maciej, Hiltke, Tara, Boja, Emily, Kinsinger, Christopher R., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Mutch, David, Fuh, Katherine, Ellis, Matthew J., DeLair, Deborah, Thiagarajan, Mathangi, Mani, D.R., Getz, Gad, Noble, Michael, Nesvizhskii, Alexey I., Wang, Pei, Anderson, Matthew L., Levine, Douglas A., Smith, Richard D., Payne, Samuel H., Ruggles, Kelly V., Rodland, Karin D., Ding, Li, Zhang, Bing, Liu, Tao, Fenyö, David

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A proteogenomic portrait of lung squamous cell carcinoma mā Satpathy, Shankha, Krug, Karsten, Jean Beltran, Pierre M., Savage, Sara R., Petralia, Francesca, Kumar-Sinha, Chandan, Dou, Yongchao, Reva, Boris, Kane, M. Harry, Avanessian, Shayan C., Vasaikar, Suhas V., Krek, Azra, Lei, Jonathan T., Jaehnig, Eric J., Omelchenko, Tatiana, Geffen, Yifat, Bergstrom, Erik J., Stathias, Vasileios, Christianson, Karen E., Heiman, David I., Cieslik, Marcin P., Cao, Song, Song, Xiaoyu, Ji, Jiayi, Liu, Wenke, Li, Kai, Wen, Bo, Li, Yize, Gümüş, Zeynep H., Selvan, Myvizhi Esai, Soundararajan, Rama, Visal, Tanvi H., Raso, Maria G., Parra, Edwin Roger, Babur, Özgün, Vats, Pankaj, Anand, Shankara, Schraink, Tobias, Cornwell, MacIntosh, Rodrigues, Fernanda Martins, Zhu, Houxiang, Mo, Chia-Kuei, Zhang, Yuping, da Veiga Leprevost, Felipe, Huang, Chen, Chinnaiyan, Arul M., Wyczalkowski, Matthew A., Omenn, Gilbert S., Newton, Chelsea J., Schurer, Stephan, Ruggles, Kelly V., Fenyö, David, Jewell, Scott D., Thiagarajan, Mathangi, Mesri, Mehdi, Rodriguez, Henry, Mani, Sendurai A., Udeshi, Namrata D., Getz, Gad, Suh, James, Li, Qing Kay, Hostetter, Galen, Paik, Paul K., Dhanasekaran, Saravana M., Govindan, Ramaswamy, Ding, Li, Robles, Ana I., Clauser, Karl R., Nesvizhskii, Alexey I., Wang, Pei, Carr, Steven A., Zhang, Bing, Mani, D. R., Gillette, Michael A.

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Proteogenomic and metabolomic characterization of human glioblastoma mā Wang, Liang-Bo, Karpova, Alla, Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Li, Yize, Rykunov, Dmitry, Colaprico, Antonio, Rothstein, Joseph H., Hong, Runyu, Stathias, Vasileios, Cornwell, MacIntosh, Petralia, Francesca, Wu, Yige, Reva, Boris, Krug, Karsten, Pugliese, Pietro, Kawaler, Emily, Olsen, Lindsey K., Liang, Wen-Wei, Song, Xiaoyu, Dou, Yongchao, Wendl, Michael C., Caravan, Wagma, Liu, Wenke, Zhou, Daniel Cui, Ji, Jiayi, Tsai, Chia-Feng, Petyuk, Vladislav A., Moon, Jamie, Ma, Weiping, Chu, Rosalie K., Weitz, Karl K., Moore, Ronald J., Monroe, Matthew E., Zhao, Rui, Yang, Xiaolu, Yoo, Seungyeul, Krek, Azra, Demopoulos, Alexis, Zhu, Houxiang, Wyczalkowski, Matthew A., McMichael, Joshua F., Henderson, Brittany L., Lindgren, Caleb M., Boekweg, Hannah, Lu, Shuangjia, Baral, Jessika, Yao, Lijun, Stratton, Kelly G., Bramer, Lisa M., Zink, Erika, Couvillion, Sneha P., Bloodsworth, Kent J., Satpathy, Shankha, Sieh, Weiva, Boca, Simina M., Schürer, Stephan, Chen, Feng, Wiznerowicz, Maciej, Ketchum, Karen A., Boja, Emily S., Kinsinger, Christopher R., Robles, Ana I., Hiltke, Tara, Thiagarajan, Mathangi, Nesvizhskii, Alexey I., Zhang, Bing, Mani, D.R., Ceccarelli, Michele, Chen, Xi S., Cottingham, Sandra L., Li, Qing Kay, Kim, Albert H., Fenyö, David, Ruggles, Kelly V., Rodriguez, Henry, Mesri, Mehdi, Payne, Samuel H., Resnick, Adam C., Wang, Pei, Smith, Richard D., Iavarone, Antonio, Chheda, Milan G., Barnholtz-Sloan, Jill S., Rodland, Karin D., Liu, Tao, Ding, Li

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