Torthaí cuardaigh - Collin Tokheim

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  1. 1
    CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers

    CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers de réir Collin Tokheim, Rachel Karchin

    Foilsithe / Cruthaithe 2019
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  2. 2
    Evaluating the evaluation of cancer driver genes

    Evaluating the evaluation of cancer driver genes de réir Collin Tokheim, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein, Rachel Karchin

    Foilsithe / Cruthaithe 2016
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  3. 3
    Evaluation of machine learning methods to predict peptide binding to MHC Class I proteins

    Evaluation of machine learning methods to predict peptide binding to MHC Class I proteins de réir Rohit Bhattacharya, Ashok Sivakumar, Collin Tokheim, Violeta Beleva Guthrie, Valsamo Anagnostou, Victor E. Velculescu, Rachel Karchin

    Foilsithe / Cruthaithe 2017
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  4. 4
    Integrated Informatics Analysis of Cancer-Related Variants

    Integrated Informatics Analysis of Cancer-Related Variants de réir Kymberleigh A. Pagel, Rick Kim, Kyle Moad, Ben Busby, Lily Zheng, Collin Tokheim, Michaël Ryan, Rachel Karchin

    Foilsithe / Cruthaithe 2020
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  5. 5
    Transcriptome-wide Landscape of Pre-mRNA Alternative Splicing Associated with Metastatic Colonization

    Transcriptome-wide Landscape of Pre-mRNA Alternative Splicing Associated with Metastatic Colonization de réir Zhixiang Lu, Qin Huang, Juw Won Park, Shihao Shen, Lan Lin, Collin Tokheim, Michael D. Henry, Yi Xing

    Foilsithe / Cruthaithe 2014
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  6. 6
    Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure

    Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure de réir Collin Tokheim, Rohit Bhattacharya, Noushin Niknafs, Derek M. Gygax, Rick Kim, Michael T. Ryan, David L. Masica, Rachel Karchin

    Foilsithe / Cruthaithe 2016
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  7. 7
    CRAVAT 4: Cancer-Related Analysis of Variants Toolkit

    CRAVAT 4: Cancer-Related Analysis of Variants Toolkit de réir David L. Masica, Christopher Douville, Collin Tokheim, Rohit Bhattacharya, RyangGuk Kim, Kyle Moad, Michaël Ryan, Rachel Karchin

    Foilsithe / Cruthaithe 2017
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  8. 8
    Determinants of transcription factor regulatory range

    Determinants of transcription factor regulatory range de réir Chen-Hao Chen, Rongbin Zheng, Collin Tokheim, Xin Dong, Jing‐Yu Fan, Changxin Wan, Qin Tang, Myles Brown, Jun S. Liu, Clifford A. Meyer, X. Shirley Liu

    Foilsithe / Cruthaithe 2020
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  9. 9
    Systematic characterization of mutations altering protein degradation in human cancers

    Systematic characterization of mutations altering protein degradation in human cancers de réir Collin Tokheim, Xiaoqing Wang, Richard T. Timms, Boning Zhang, Elijah L. Mena, Binbin Wang, Cynthia Chen, Jun Ge, Jun Chu, Wubing Zhang, Stephen J. Elledge, Myles Brown, X. Shirley Liu

    Foilsithe / Cruthaithe 2021
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  10. 10
    Machine Learning Modeling of Protein-Intrinsic Features Predicts Tractability of Targeted Protein Degradation

    Machine Learning Modeling of Protein-Intrinsic Features Predicts Tractability of Targeted Protein Degradation de réir Wubing Zhang, Shourya S. Roy Burman, Jiaye Chen, Katherine A. Donovan, Yang Cao, Chelsea Shu, Boning Zhang, Zexian Zeng, Shengqing Gu, Yi Zhang, Dian Li, Eric S. Fischer, Collin Tokheim, X. Shirley Liu

    Foilsithe / Cruthaithe 2022
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  11. 11
    High-Throughput Prediction of MHC Class I and II Neoantigens with MHCnuggets

    High-Throughput Prediction of MHC Class I and II Neoantigens with MHCnuggets de réir Xiaoshan M. Shao, Rohit Bhattacharya, Justin Huang, I.K. Ashok Sivakumar, Collin Tokheim, Lily Zheng, Dylan Hirsch, Benjamin Kaminow, Ashton Omdahl, Maria Bonsack, Angelika B. Riemer, Victor E. Velculescu, Valsamo Anagnostou, Kymberleigh A. Pagel, Rachel Karchin

    Foilsithe / Cruthaithe 2019
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  12. 12
    Minimal functional driver gene heterogeneity among untreated metastases

    Minimal functional driver gene heterogeneity among untreated metastases de réir Johannes G. Reiter, Alvin Makohon‐Moore, Jeffrey M. Gerold, Alexander Heyde, Marc A. Attiyeh, Zachary A. Kohutek, Collin Tokheim, Alexia Brown, Rayne M. DeBlasio, Juliana Niyazov, Amanda Zucker, Rachel Karchin, Kenneth W. Kinzler, Christine A. Iacobuzio‐Donahue, Bert Vogelstein, Martin A. Nowak

    Foilsithe / Cruthaithe 2018
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  13. 13
    In vivo CRISPR screens identify the E3 ligase Cop1 as a modulator of macrophage infiltration and cancer immunotherapy target

    In vivo CRISPR screens identify the E3 ligase Cop1 as a modulator of macrophage infiltration and cancer immunotherapy target de réir Xiaoqing Wang, Collin Tokheim, Shengqing Gu, Binbin Wang, Qin Tang, Yihao Li, Nicole Traugh, Zexian Zeng, Yi Zhang, Ziyi Li, Boning Zhang, Jingxin Fu, Tengfei Xiao, Wei Li, Clifford A. Meyer, Jun Chu, Peng Jiang, Paloma Cejas, Klothilda Lim, Henry W. Long, Myles Brown, X. Shirley Liu

    Foilsithe / Cruthaithe 2021
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  14. 14
    Whole-Genome Sequencing of Salivary Gland Adenoid Cystic Carcinoma

    Whole-Genome Sequencing of Salivary Gland Adenoid Cystic Carcinoma de réir Eleni M. Rettig, C. Conover Talbot, Mark Sausen, Siân Jones, Justin A. Bishop, Laura D. Wood, Collin Tokheim, Noushin Niknafs, Rachel Karchin, Elana J. Fertig, Sarah J. Wheelan, Luigi Marchionni, Michael Considine, Shizhang Ling, Carole Fakhry, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein, Patrick K. Ha, Nishant Agrawal

    Foilsithe / Cruthaithe 2016
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  15. 15
    Genomic alterations in head and neck squamous cell carcinoma determined by cancer gene-targeted sequencing

    Genomic alterations in head and neck squamous cell carcinoma determined by cancer gene-targeted sequencing de réir Christine H. Chung, Violeta Beleva Guthrie, David L. Masica, Collin Tokheim, Hyunseok Kang, Jeremy D. Richmon, Nishant Agrawal, Carole Fakhry, Harry Quon, Rathan M. Subramaniam, Zhixiang Zuo, T. Seiwert, Zachary R. Chalmers, Garrett M. Frampton, Siraj M. Ali, Roman Yelensky, Philip J. Stephens, V.A. Miller, Rachel Karchin, Justin A. Bishop

    Foilsithe / Cruthaithe 2015
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  16. 16
    The genomic landscape of response to EGFR blockade in colorectal cancer

    The genomic landscape of response to EGFR blockade in colorectal cancer de réir Andrea Bertotti, Eniko Papp, Siân Jones, Vilmos Adleff, Valsamo Anagnostou, Barbara Lupo, Mark Sausen, Jillian Phallen, Carolyn Hruban, Collin Tokheim, Noushin Niknafs, Monica Nesselbush, Karli Lytle, Francesco Sassi, Francesca Cottino, Giorgia Migliardi, Eugenia R. Zanella, Dario Ribero, Nadia Russolillo, Alfredo Mellano, Andrea Muratore, Gianluca Paraluppi, Mauro Salizzoni, Silvia Marsoni, Michael Kragh, Johan Lantto, Andrea Cassingena, Qing Kay Li, Rachel Karchin, Robert B. Scharpf, Andrea Sartore‐Bianchi, Salvatore Siena, Luis A. Díaz, Livio Trusolino, Victor E. Velculescu

    Foilsithe / Cruthaithe 2015
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  17. 17
    Therapeutically Increasing MHC-I Expression Potentiates Immune Checkpoint Blockade

    Therapeutically Increasing MHC-I Expression Potentiates Immune Checkpoint Blockade de réir Shengqing Gu, Wubing Zhang, Xiaoqing Wang, Peng Jiang, Nicole Traugh, Ziyi Li, Clifford A. Meyer, Blair Stewig, Yingtian Xie, Xia Bu, Michael P. Manos, Alba Font‐Tello, Evisa Gjini, Ana Lako, Klothilda Lim, Jake R. Conway, Alok K. Tewari, Zexian Zeng, Avinash Sahu, Collin Tokheim, Jason L. Weirather, Jingxin Fu, Yi Zhang, Benjamin Kroger, Jin Hua Liang, Paloma Cejas, Gordon J. Freeman, Scott J. Rodig, Henry W. Long, Benjamin E. Gewurz, F. Stephen Hodi, Myles Brown, X. Shirley Liu

    Foilsithe / Cruthaithe 2021
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  18. 18
    Systematic Functional Annotation of Somatic Mutations in Cancer

    Systematic Functional Annotation of Somatic Mutations in Cancer de réir Patrick Kwok‐Shing Ng, Jun Li, Kang Jin Jeong, Shan Shao, Hu Chen, Yiu Huen Tsang, Sohini Sengupta, Zixing Wang, Venkata Hemanjani Bhavana, Richard Tran, Stephanie Soewito, Darlan Conterno Minussi, Daniela Moreno, Kathleen Kong, Turgut Dogruluk, Hengyu Lu, Jianjiong Gao, Collin Tokheim, Daniel Cui Zhou, Amber M. Johnson, Jia Zeng, Carman K. M. Ip, Zhenlin Ju, Matthew Wester, Shuangxing Yu, Yongsheng Li, Christopher P. Vellano, Nikolaus Schultz, Rachel Karchin, Li Ding, Yiling Lu, Lydia W.T. Cheung, Ken Chen, Kenna Shaw, Funda Meric‐Bernstam, Kenneth L. Scott, S. Stephen Yi, Nidhi Sahni, Han Liang, Gordon B. Mills

    Foilsithe / Cruthaithe 2018
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  19. 19
    Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

    Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics de réir Li Ding, Matthew H. Bailey, Eduard Porta‐Pardo, Vésteinn Thórsson, Antonio Colaprico, Denis Bertrand, David L. Gibbs, Amila Weerasinghe, Kuan‐lin Huang, Collin Tokheim, Isidro Cortés‐Ciriano, Reyka G. Jayasinghe, Feng Chen, Lihua Yu, Sam Q. Sun, Catharina Olsen, Jaegil Kim, Alison M. Taylor, Andrew D. Cherniack, Rehan Akbani, Chayaporn Suphavilai, Niranjan Nagarajan, Joshua M. Stuart, Gordon B. Mills, Matthew A. Wyczalkowski, Benjamin G. Vincent, Carolyn M. Hutter, Jean C. Zenklusen, Katherine A. Hoadley, Michael C. Wendl, llya Shmulevich, Alexander J. Lazar, David A. Wheeler, Gad Getz, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Seungchan Kim, Michael S. Lawrence, Pei Lin, Thomas J. Giordano, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michaël Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia

    Foilsithe / Cruthaithe 2018
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  20. 20
    Comprehensive Characterization of Cancer Driver Genes and Mutations

    Comprehensive Characterization of Cancer Driver Genes and Mutations de réir Matthew H. Bailey, Collin Tokheim, Eduard Porta‐Pardo, Sohini Sengupta, Denis Bertrand, Amila Weerasinghe, Antonio Colaprico, Michael C. Wendl, Jaegil Kim, Brendan Reardon, Patrick Kwok‐Shing Ng, Kang Jin Jeong, Song Cao, Zixing Wang, Galen F. Gao, Qingsong Gao, Fang Wang, Eric Minwei Liu, Loris Mularoni, Carlota Rubio-Pérez, Niranjan Nagarajan, Isidro Cortés‐Ciriano, Daniel Cui Zhou, Wen-Wei Liang, Julian M. Hess, Venkata Yellapantula, David Tamborero, Abel González-Pérez, Chayaporn Suphavilai, Jia Yu Ko, Ekta Khurana, Peter J. Park, Eliezer M. Van Allen, Han Liang, Michael S. Lawrence, Adam Godzik, Núria López-Bigas, Joshua M. Stuart, David A. Wheeler, Gad Getz, Ken Chen, Alexander J. Lazar, Gordon B. Mills, Rachel Karchin, Li Ding, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Linghua Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Thomas J. Giordano, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling

    Foilsithe / Cruthaithe 2018
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