Výsledky vyhledávání - Collado-Torres, Leonardo

regionReport: Interactive reports for region-level and feature-level genomic analyses Autor Collado-Torres, Leonardo, Jaffe, Andrew E., Leek, Jeffrey T.

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recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor Autor Collado-Torres, Leonardo, Nellore, Abhinav, Jaffe, Andrew E.

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Improving the value of public RNA-seq expression data by phenotype prediction Autor Ellis, Shannon E, Collado-Torres, Leonardo, Jaffe, Andrew, Leek, Jeffrey T

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Megadepth: efficient coverage quantification for BigWigs and BAMs Autor Wilks, Christopher, Ahmed, Omar, Baker, Daniel N, Zhang, David, Collado-Torres, Leonardo, Langmead, Ben

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Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus Autor Shank, Elizabeth A., Klepac-Ceraj, Vanja, Collado-Torres, Leonardo, Powers, Gordon E., Losick, Richard, Kolter, Roberto

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SynGAP isoforms differentially regulate synaptic plasticity and dendritic development Autor Araki, Yoichi, Hong, Ingie, Gamache, Timothy R, Ju, Shaowen, Collado-Torres, Leonardo, Shin, Joo Heon, Huganir, Richard L

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Programmatic access to bacterial regulatory networks with regutools Autor Chávez, Joselyn, Barberena-Jonas, Carmina, Sotelo-Fonseca, Jesus E, Alquicira-Hernández, José, Salgado, Heladia, Collado-Torres, Leonardo, Reyes, Alejandro

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Rail-RNA: scalable analysis of RNA-seq splicing and coverage Autor Nellore, Abhinav, Collado-Torres, Leonardo, Jaffe, Andrew E, Alquicira-Hernández, José, Wilks, Christopher, Pritt, Jacob, Morton, James, Leek, Jeffrey T, Langmead, Ben

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Flexible expressed region analysis for RNA-seq with derfinder Autor Collado-Torres, Leonardo, Nellore, Abhinav, Frazee, Alyssa C., Wilks, Christopher, Love, Michael I., Langmead, Ben, Irizarry, Rafael A., Leek, Jeffrey T., Jaffe, Andrew E.

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Reproducible RNA-seq analysis using recount2 Autor Collado-Torres, Leonardo, Nellore, Abhinav, Kammers, Kai, Ellis, Shannon E, Taub, Margaret A, Hansen, Kasper D, Jaffe, Andrew E, Langmead, Ben, Leek, Jeffrey T

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SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor Autor Righelli, Dario, Weber, Lukas M, Crowell, Helena L, Pardo, Brenda, Collado-Torres, Leonardo, Ghazanfar, Shila, Lun, Aaron T L, Hicks, Stephanie C, Risso, Davide

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Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses Autor Kuri-Magaña, Helena, Collado-Torres, Leonardo, Jaffe, Andrew E., Valdovinos-Torres, Humberto, Ovilla-Muñoz, Marbella, Téllez-Sosa, Juan, Bonifaz, Laura C., Martínez-Barnetche, Jesús

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spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data Autor Pardo, Brenda, Spangler, Abby, Weber, Lukas M., Page, Stephanie C., Hicks, Stephanie C., Jaffe, Andrew E., Martinowich, Keri, Maynard, Kristen R., Collado-Torres, Leonardo

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Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive Autor Nellore, Abhinav, Jaffe, Andrew E., Fortin, Jean-Philippe, Alquicira-Hernández, José, Collado-Torres, Leonardo, Wang, Siruo, Phillips III, Robert A., Karbhari, Nishika, Hansen, Kasper D., Langmead, Ben, Leek, Jeffrey T.

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Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods Autor Wright, Carrie, Rajpurohit, Anandita, Burke, Emily E., Williams, Courtney, Collado-Torres, Leonardo, Kimos, Martha, Brandon, Nicholas J., Cross, Alan J., Jaffe, Andrew E., Weinberger, Daniel R., Shin, Joo Heon

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Developmental regulation of human cortex transcription and its clinical relevance at base resolution Autor Jaffe, Andrew E., Shin, Jooheon, Collado-Torres, Leonardo, Leek, Jeffrey T., Tao, Ran, Li, Chao, Gao, Yuan, Jia, Yankai, Maher, Brady J., Hyde, Thomas M., Kleinman, Joel E., Weinberger, Daniel R.

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Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex Autor Perzel Mandell, Kira A., Price, Amanda J., Wilton, Richard, Collado-Torres, Leonardo, Tao, Ran, Eagles, Nicholas J., Szalay, Alexander S., Hyde, Thomas M., Weinberger, Daniel R., Kleinman, Joel E., Jaffe, Andrew E.

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Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders Autor Zhang, David, Guelfi, Sebastian, Garcia-Ruiz, Sonia, Costa, Beatrice, Reynolds, Regina H., D’Sa, Karishma, Liu, Wenfei, Courtin, Thomas, Peterson, Amy, Jaffe, Andrew E., Hardy, John, Botía, Juan A., Collado-Torres, Leonardo, Ryten, Mina

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Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation Autor Price, Amanda J., Collado-Torres, Leonardo, Ivanov, Nikolay A., Xia, Wei, Burke, Emily E., Shin, Joo Heon, Tao, Ran, Ma, Liang, Jia, Yankai, Hyde, Thomas M., Kleinman, Joel E., Weinberger, Daniel R., Jaffe, Andrew E.

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Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells Autor Madugundu, Anil K., Na, Chan Hyun, Nirujogi, Raja Sekhar, Renuse, Santosh, Kim, Kwang Pyo, Burns, Kathleen H., Wilks, Christopher, Langmead, Ben, Ellis, Shannon E., Collado‐Torres, Leonardo, Halushka, Marc K., Kim, Min‐Sik, Pandey, Akhilesh

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