Søgeresultater - Collado-Torres, Leonardo

regionReport: Interactive reports for region-level and feature-level genomic analyses af Collado-Torres, Leonardo, Jaffe, Andrew E., Leek, Jeffrey T.

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recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor af Collado-Torres, Leonardo, Nellore, Abhinav, Jaffe, Andrew E.

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Improving the value of public RNA-seq expression data by phenotype prediction af Ellis, Shannon E, Collado-Torres, Leonardo, Jaffe, Andrew, Leek, Jeffrey T

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Megadepth: efficient coverage quantification for BigWigs and BAMs af Wilks, Christopher, Ahmed, Omar, Baker, Daniel N, Zhang, David, Collado-Torres, Leonardo, Langmead, Ben

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Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus af Shank, Elizabeth A., Klepac-Ceraj, Vanja, Collado-Torres, Leonardo, Powers, Gordon E., Losick, Richard, Kolter, Roberto

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SynGAP isoforms differentially regulate synaptic plasticity and dendritic development af Araki, Yoichi, Hong, Ingie, Gamache, Timothy R, Ju, Shaowen, Collado-Torres, Leonardo, Shin, Joo Heon, Huganir, Richard L

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Programmatic access to bacterial regulatory networks with regutools af Chávez, Joselyn, Barberena-Jonas, Carmina, Sotelo-Fonseca, Jesus E, Alquicira-Hernández, José, Salgado, Heladia, Collado-Torres, Leonardo, Reyes, Alejandro

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Rail-RNA: scalable analysis of RNA-seq splicing and coverage af Nellore, Abhinav, Collado-Torres, Leonardo, Jaffe, Andrew E, Alquicira-Hernández, José, Wilks, Christopher, Pritt, Jacob, Morton, James, Leek, Jeffrey T, Langmead, Ben

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Flexible expressed region analysis for RNA-seq with derfinder af Collado-Torres, Leonardo, Nellore, Abhinav, Frazee, Alyssa C., Wilks, Christopher, Love, Michael I., Langmead, Ben, Irizarry, Rafael A., Leek, Jeffrey T., Jaffe, Andrew E.

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Reproducible RNA-seq analysis using recount2 af Collado-Torres, Leonardo, Nellore, Abhinav, Kammers, Kai, Ellis, Shannon E, Taub, Margaret A, Hansen, Kasper D, Jaffe, Andrew E, Langmead, Ben, Leek, Jeffrey T

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SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor af Righelli, Dario, Weber, Lukas M, Crowell, Helena L, Pardo, Brenda, Collado-Torres, Leonardo, Ghazanfar, Shila, Lun, Aaron T L, Hicks, Stephanie C, Risso, Davide

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Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses af Kuri-Magaña, Helena, Collado-Torres, Leonardo, Jaffe, Andrew E., Valdovinos-Torres, Humberto, Ovilla-Muñoz, Marbella, Téllez-Sosa, Juan, Bonifaz, Laura C., Martínez-Barnetche, Jesús

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spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data af Pardo, Brenda, Spangler, Abby, Weber, Lukas M., Page, Stephanie C., Hicks, Stephanie C., Jaffe, Andrew E., Martinowich, Keri, Maynard, Kristen R., Collado-Torres, Leonardo

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Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive af Nellore, Abhinav, Jaffe, Andrew E., Fortin, Jean-Philippe, Alquicira-Hernández, José, Collado-Torres, Leonardo, Wang, Siruo, Phillips III, Robert A., Karbhari, Nishika, Hansen, Kasper D., Langmead, Ben, Leek, Jeffrey T.

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Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods af Wright, Carrie, Rajpurohit, Anandita, Burke, Emily E., Williams, Courtney, Collado-Torres, Leonardo, Kimos, Martha, Brandon, Nicholas J., Cross, Alan J., Jaffe, Andrew E., Weinberger, Daniel R., Shin, Joo Heon

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Developmental regulation of human cortex transcription and its clinical relevance at base resolution af Jaffe, Andrew E., Shin, Jooheon, Collado-Torres, Leonardo, Leek, Jeffrey T., Tao, Ran, Li, Chao, Gao, Yuan, Jia, Yankai, Maher, Brady J., Hyde, Thomas M., Kleinman, Joel E., Weinberger, Daniel R.

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Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex af Perzel Mandell, Kira A., Price, Amanda J., Wilton, Richard, Collado-Torres, Leonardo, Tao, Ran, Eagles, Nicholas J., Szalay, Alexander S., Hyde, Thomas M., Weinberger, Daniel R., Kleinman, Joel E., Jaffe, Andrew E.

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Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders af Zhang, David, Guelfi, Sebastian, Garcia-Ruiz, Sonia, Costa, Beatrice, Reynolds, Regina H., D’Sa, Karishma, Liu, Wenfei, Courtin, Thomas, Peterson, Amy, Jaffe, Andrew E., Hardy, John, Botía, Juan A., Collado-Torres, Leonardo, Ryten, Mina

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Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation af Price, Amanda J., Collado-Torres, Leonardo, Ivanov, Nikolay A., Xia, Wei, Burke, Emily E., Shin, Joo Heon, Tao, Ran, Ma, Liang, Jia, Yankai, Hyde, Thomas M., Kleinman, Joel E., Weinberger, Daniel R., Jaffe, Andrew E.

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Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells af Madugundu, Anil K., Na, Chan Hyun, Nirujogi, Raja Sekhar, Renuse, Santosh, Kim, Kwang Pyo, Burns, Kathleen H., Wilks, Christopher, Langmead, Ben, Ellis, Shannon E., Collado‐Torres, Leonardo, Halushka, Marc K., Kim, Min‐Sik, Pandey, Akhilesh

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