Resultats de la cerca - Collado‐Torres, Leonardo

regionReport: Interactive reports for region-level and feature-level genomic analyses per Collado-Torres, Leonardo, Jaffe, Andrew E., Leek, Jeffrey T.

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recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor per Collado-Torres, Leonardo, Nellore, Abhinav, Jaffe, Andrew E.

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Improving the value of public RNA-seq expression data by phenotype prediction per Ellis, Shannon E, Collado-Torres, Leonardo, Jaffe, Andrew, Leek, Jeffrey T

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Megadepth: efficient coverage quantification for BigWigs and BAMs per Wilks, Christopher, Ahmed, Omar, Baker, Daniel N, Zhang, David, Collado-Torres, Leonardo, Langmead, Ben

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Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus per Shank, Elizabeth A., Klepac-Ceraj, Vanja, Collado-Torres, Leonardo, Powers, Gordon E., Losick, Richard, Kolter, Roberto

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SynGAP isoforms differentially regulate synaptic plasticity and dendritic development per Araki, Yoichi, Hong, Ingie, Gamache, Timothy R, Ju, Shaowen, Collado-Torres, Leonardo, Shin, Joo Heon, Huganir, Richard L

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Programmatic access to bacterial regulatory networks with regutools per Chávez, Joselyn, Barberena-Jonas, Carmina, Sotelo-Fonseca, Jesus E, Alquicira-Hernández, José, Salgado, Heladia, Collado-Torres, Leonardo, Reyes, Alejandro

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Rail-RNA: scalable analysis of RNA-seq splicing and coverage per Nellore, Abhinav, Collado-Torres, Leonardo, Jaffe, Andrew E, Alquicira-Hernández, José, Wilks, Christopher, Pritt, Jacob, Morton, James, Leek, Jeffrey T, Langmead, Ben

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Flexible expressed region analysis for RNA-seq with derfinder per Collado-Torres, Leonardo, Nellore, Abhinav, Frazee, Alyssa C., Wilks, Christopher, Love, Michael I., Langmead, Ben, Irizarry, Rafael A., Leek, Jeffrey T., Jaffe, Andrew E.

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Reproducible RNA-seq analysis using recount2 per Collado-Torres, Leonardo, Nellore, Abhinav, Kammers, Kai, Ellis, Shannon E, Taub, Margaret A, Hansen, Kasper D, Jaffe, Andrew E, Langmead, Ben, Leek, Jeffrey T

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SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor per Righelli, Dario, Weber, Lukas M, Crowell, Helena L, Pardo, Brenda, Collado-Torres, Leonardo, Ghazanfar, Shila, Lun, Aaron T L, Hicks, Stephanie C, Risso, Davide

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Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses per Kuri-Magaña, Helena, Collado-Torres, Leonardo, Jaffe, Andrew E., Valdovinos-Torres, Humberto, Ovilla-Muñoz, Marbella, Téllez-Sosa, Juan, Bonifaz, Laura C., Martínez-Barnetche, Jesús

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spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data per Pardo, Brenda, Spangler, Abby, Weber, Lukas M., Page, Stephanie C., Hicks, Stephanie C., Jaffe, Andrew E., Martinowich, Keri, Maynard, Kristen R., Collado-Torres, Leonardo

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Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive per Nellore, Abhinav, Jaffe, Andrew E., Fortin, Jean-Philippe, Alquicira-Hernández, José, Collado-Torres, Leonardo, Wang, Siruo, Phillips III, Robert A., Karbhari, Nishika, Hansen, Kasper D., Langmead, Ben, Leek, Jeffrey T.

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Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods per Wright, Carrie, Rajpurohit, Anandita, Burke, Emily E., Williams, Courtney, Collado-Torres, Leonardo, Kimos, Martha, Brandon, Nicholas J., Cross, Alan J., Jaffe, Andrew E., Weinberger, Daniel R., Shin, Joo Heon

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Developmental regulation of human cortex transcription and its clinical relevance at base resolution per Jaffe, Andrew E., Shin, Jooheon, Collado-Torres, Leonardo, Leek, Jeffrey T., Tao, Ran, Li, Chao, Gao, Yuan, Jia, Yankai, Maher, Brady J., Hyde, Thomas M., Kleinman, Joel E., Weinberger, Daniel R.

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Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex per Perzel Mandell, Kira A., Price, Amanda J., Wilton, Richard, Collado-Torres, Leonardo, Tao, Ran, Eagles, Nicholas J., Szalay, Alexander S., Hyde, Thomas M., Weinberger, Daniel R., Kleinman, Joel E., Jaffe, Andrew E.

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Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders per Zhang, David, Guelfi, Sebastian, Garcia-Ruiz, Sonia, Costa, Beatrice, Reynolds, Regina H., D’Sa, Karishma, Liu, Wenfei, Courtin, Thomas, Peterson, Amy, Jaffe, Andrew E., Hardy, John, Botía, Juan A., Collado-Torres, Leonardo, Ryten, Mina

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Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation per Price, Amanda J., Collado-Torres, Leonardo, Ivanov, Nikolay A., Xia, Wei, Burke, Emily E., Shin, Joo Heon, Tao, Ran, Ma, Liang, Jia, Yankai, Hyde, Thomas M., Kleinman, Joel E., Weinberger, Daniel R., Jaffe, Andrew E.

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Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells per Madugundu, Anil K., Na, Chan Hyun, Nirujogi, Raja Sekhar, Renuse, Santosh, Kim, Kwang Pyo, Burns, Kathleen H., Wilks, Christopher, Langmead, Ben, Ellis, Shannon E., Collado‐Torres, Leonardo, Halushka, Marc K., Kim, Min‐Sik, Pandey, Akhilesh

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