Bilaketaren emaitzak - Colin N. Dewey

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  1. 1
    Positional orthology: putting genomic evolutionary relationships into context

    Positional orthology: putting genomic evolutionary relationships into context nork Colin N. Dewey

    Argitaratua 2011
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  2. 2
    RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

    RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome nork Bo Li, Colin N. Dewey

    Argitaratua 2011
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  3. 3
    Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns

    Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns nork Colin N. Dewey, Igor B. Rogozin, Eugene V. Koonin

    Argitaratua 2006
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  4. 4
    MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive

    MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive nork Matthew N. Bernstein, AnHai Doan, Colin N. Dewey

    Argitaratua 2017
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  5. 5
    Rbm20 regulates titin alternative splicing as a splicing repressor

    Rbm20 regulates titin alternative splicing as a splicing repressor nork Shijun Li, Wei Guo, Colin N. Dewey, Marion L. Greaser

    Argitaratua 2013
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  6. 6
    BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

    BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis nork Bret Larget, Satish K. Kotha, Colin N. Dewey, Cécile Ané

    Argitaratua 2010
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  7. 7
    CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology

    CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology nork Matthew N. Bernstein, Zhongjie Ma, Michael Gleicher, Colin N. Dewey

    Argitaratua 2020
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  8. 8
    RNA-Seq gene expression estimation with read mapping uncertainty

    RNA-Seq gene expression estimation with read mapping uncertainty nork Bo Li, Victor Ruotti, Ron Stewart, James A. Thomson, Colin N. Dewey

    Argitaratua 2009
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  9. 9
    Infection induced inflammation impairs wound healing through IL-1β signaling

    Infection induced inflammation impairs wound healing through IL-1β signaling nork Simone Shen, Veronika Miskolci, Colin N. Dewey, John‐Demian Sauer, Anna Huttenlocher

    Argitaratua 2024
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  10. 10
    Fine-Scale Phylogenetic Discordance across the House Mouse Genome

    Fine-Scale Phylogenetic Discordance across the House Mouse Genome nork Michael A. White, Cécile Ané, Colin N. Dewey, Bret Larget, Bret A. Payseur

    Argitaratua 2009
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  11. 11
    Genome-wide effects on <i>Escherichia coli</i> transcription from ppGpp binding to its two sites on RNA polymerase

    Genome-wide effects on <i>Escherichia coli</i> transcription from ppGpp binding to its two sites on RNA polymerase nork Patricia Sanchez‐Vazquez, Colin N. Dewey, Nicole Kitten, Wilma Ross, Richard L. Gourse

    Argitaratua 2019
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  12. 12
    Evaluation of de novo transcriptome assemblies from RNA-Seq data

    Evaluation of de novo transcriptome assemblies from RNA-Seq data nork Bo Li, Nathanael R. Fillmore, Yongsheng Bai, Mike Collins, James A. Thomson, Ron Stewart, Colin N. Dewey

    Argitaratua 2014
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  13. 13
    Fast Statistical Alignment

    Fast Statistical Alignment nork Robert K. Bradley, Adam Roberts, Michael Smoot, Sudeep Juvekar, Jaeyoung Do, Colin N. Dewey, Ian Holmes, Lior Pachter

    Argitaratua 2009
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  14. 14
    Mechanism governing heme synthesis reveals a GATA factor/heme circuit that controls differentiation

    Mechanism governing heme synthesis reveals a GATA factor/heme circuit that controls differentiation nork Nobuyuki Tanimura, E. C. Miller, Kazuhiko Igarashi, David T. Yang, Judith N. Burstyn, Colin N. Dewey, Emery H. Bresnick

    Argitaratua 2015
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  15. 15
    Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data

    Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data nork Dongjun Chung, Pei Fen Kuan, Bo Li, Rajendran Sanalkumar, Kun Liang, Emery H. Bresnick, Colin N. Dewey, Sündüz Keleş

    Argitaratua 2011
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  16. 16
    <i>Gata2</i> cis-element is required for hematopoietic stem cell generation in the mammalian embryo

    <i>Gata2</i> cis-element is required for hematopoietic stem cell generation in the mammalian embryo nork Xin Gao, Kirby D. Johnson, Yuan-I Chang, Meghan E. Boyer, Colin N. Dewey, Jing Zhang, Emery H. Bresnick

    Argitaratua 2013
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  17. 17
    EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments

    EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments nork Ning Leng, Yuan Li, Brian E. McIntosh, Bao Kim Nguyen, Bret Duffin, Shulan Tian, James A. Thomson, Colin N. Dewey, Ron Stewart, Christina Kendziorski

    Argitaratua 2015
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  18. 18
    Cis-regulatory mechanisms governing stem and progenitor cell transitions

    Cis-regulatory mechanisms governing stem and progenitor cell transitions nork Kirby D. Johnson, Guangyao Kong, Xin Gao, Yuan-I Chang, Kyle J. Hewitt, Rajendran Sanalkumar, R. Prathibha, Erik A. Ranheim, Colin N. Dewey, Jing Zhang, Emery H. Bresnick

    Argitaratua 2015
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  19. 19
    Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome

    Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome nork Kyle J. Hewitt, Duk Hyoung Kim, Prithvia Devadas, R. Prathibha, Chandler Zuo, Rajendran Sanalkumar, Kirby D. Johnson, Yoon-A Kang, Jin‐Soo Kim, Colin N. Dewey, Sündüz Keleş, Emery H. Bresnick

    Argitaratua 2015
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  20. 20
    A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

    A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans nork Sabbi Lall, Dominic Grün, Azra Krek, Kevin Chen, Yi-Lu Wang, Colin N. Dewey, Pranidhi Sood, Teresa Colombo, Nicolas Bray, Philip MacMenamin, Huey-Ling Kao, Kristin C. Gunsalus, Lior Pachter, Fabio Piano, Nikolaus Rajewsky

    Argitaratua 2006
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