檢索結果 - Cole Trapnell

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  1. 1
    Defining cell types and states with single-cell genomics

    Defining cell types and states with single-cell genomics 由 Cole Trapnell

    出版 2015
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  2. 2
    Single-cell transcriptome sequencing: recent advances and remaining challenges

    Single-cell transcriptome sequencing: recent advances and remaining challenges 由 Serena Liu, Cole Trapnell

    出版 2016
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  3. 3
    Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation

    Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation 由 Jonathan S. Packer, Cole Trapnell

    出版 2018
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  4. 4
    Optimizing data intensive GPGPU computations for DNA sequence alignment

    Optimizing data intensive GPGPU computations for DNA sequence alignment 由 Cole Trapnell, Michael C. Schatz

    出版 2009
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  5. 5
    How to map billions of short reads onto genomes

    How to map billions of short reads onto genomes 由 Cole Trapnell, Steven L. Salzberg

    出版 2009
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  6. 6
    TopHat: discovering splice junctions with RNA-Seq

    TopHat: discovering splice junctions with RNA-Seq 由 Cole Trapnell, Lior Pachter, Steven L. Salzberg

    出版 2009
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  7. 7
    Supervised classification enables rapid annotation of cell atlases

    Supervised classification enables rapid annotation of cell atlases 由 Hannah A. Pliner, Jay Shendure, Cole Trapnell

    出版 2019
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  8. 8
    Identification of novel transcripts in annotated genomes using RNA-Seq

    Identification of novel transcripts in annotated genomes using RNA-Seq 由 Adam Roberts, Harold Pimentel, Cole Trapnell, Lior Pachter

    出版 2011
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  9. 9
    Extreme heterogeneity of influenza virus infection in single cells

    Extreme heterogeneity of influenza virus infection in single cells 由 Alistair B. Russell, Cole Trapnell, Jesse D. Bloom

    出版 2018
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  10. 10
    Improving RNA-Seq expression estimates by correcting for fragment bias

    Improving RNA-Seq expression estimates by correcting for fragment bias 由 Adam Roberts, Cole Trapnell, Julie Donaghey, John L. Rinn, Lior Pachter

    出版 2011
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  11. 11
    Sci-fate characterizes the dynamics of gene expression in single cells

    Sci-fate characterizes the dynamics of gene expression in single cells 由 Junyue Cao, Wei Zhou, Frank J. Steemers, Cole Trapnell, Jay Shendure

    出版 2020
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  12. 12
    Dimensionality reduction by UMAP to visualize physical and genetic interactions

    Dimensionality reduction by UMAP to visualize physical and genetic interactions 由 Michael W. Dorrity, Lauren M. Saunders, Christine Queitsch, Stanley Fields, Cole Trapnell

    出版 2020
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  13. 13
    TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

    TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions 由 Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L. Salzberg

    出版 2013
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  14. 14
    Single-cell mRNA quantification and differential analysis with Census

    Single-cell mRNA quantification and differential analysis with Census 由 Xiaojie Qiu, Andrew J. Hill, Jonathan S. Packer, Dejun Lin, Yi-An Ma, Cole Trapnell

    出版 2017
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  15. 15
    Trajectory analysis quantifies transcriptional plasticity during macrophage polarization

    Trajectory analysis quantifies transcriptional plasticity during macrophage polarization 由 Serena X. Liu, Heather H. Gustafson, Dana L. Jackson, Suzie H. Pun, Cole Trapnell

    出版 2020
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  16. 16
    Differential analysis of gene regulation at transcript resolution with RNA-seq

    Differential analysis of gene regulation at transcript resolution with RNA-seq 由 Cole Trapnell, David G. Hendrickson, Martin Sauvageau, Loyal A. Goff, John L. Rinn, Lior Pachter

    出版 2012
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  17. 17
    Reversed graph embedding resolves complex single-cell developmental trajectories

    Reversed graph embedding resolves complex single-cell developmental trajectories 由 Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A. Pliner, Cole Trapnell

    出版 2017
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  18. 18
    Reversed graph embedding resolves complex single-cell trajectories

    Reversed graph embedding resolves complex single-cell trajectories 由 Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A. Pliner, Cole Trapnell

    出版 2017
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  19. 19
    A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition

    A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition 由 José L. McFaline‐Figueroa, Andrew J. Hill, Xiaojie Qiu, Dana L. Jackson, Jay Shendure, Cole Trapnell

    出版 2019
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  20. 20
    Single-cell sequencing of individual retinal organoids reveals determinants of cell-fate heterogeneity

    Single-cell sequencing of individual retinal organoids reveals determinants of cell-fate heterogeneity 由 Amy Tresenrider, Akshayalakshmi Sridhar, Kiara C. Eldred, Sophia A. Cuschieri, Dawn Hoffer, Cole Trapnell, Thomas A. Reh

    出版 2023
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