Результаты поиска - Cole Trapnell

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  1. 1
    Defining cell types and states with single-cell genomics

    Defining cell types and states with single-cell genomics по Cole Trapnell

    Опубликовано 2015
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  2. 2
    Single-cell transcriptome sequencing: recent advances and remaining challenges

    Single-cell transcriptome sequencing: recent advances and remaining challenges по Serena Liu, Cole Trapnell

    Опубликовано 2016
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  3. 3
    Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation

    Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation по Jonathan S. Packer, Cole Trapnell

    Опубликовано 2018
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  4. 4
    Optimizing data intensive GPGPU computations for DNA sequence alignment

    Optimizing data intensive GPGPU computations for DNA sequence alignment по Cole Trapnell, Michael C. Schatz

    Опубликовано 2009
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    Artigo
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  5. 5
    How to map billions of short reads onto genomes

    How to map billions of short reads onto genomes по Cole Trapnell, Steven L. Salzberg

    Опубликовано 2009
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    Artigo
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  6. 6
    TopHat: discovering splice junctions with RNA-Seq

    TopHat: discovering splice junctions with RNA-Seq по Cole Trapnell, Lior Pachter, Steven L. Salzberg

    Опубликовано 2009
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    Artigo
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  7. 7
    Supervised classification enables rapid annotation of cell atlases

    Supervised classification enables rapid annotation of cell atlases по Hannah A. Pliner, Jay Shendure, Cole Trapnell

    Опубликовано 2019
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    Artigo
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  8. 8
    Identification of novel transcripts in annotated genomes using RNA-Seq

    Identification of novel transcripts in annotated genomes using RNA-Seq по Adam Roberts, Harold Pimentel, Cole Trapnell, Lior Pachter

    Опубликовано 2011
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    Artigo
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  9. 9
    Extreme heterogeneity of influenza virus infection in single cells

    Extreme heterogeneity of influenza virus infection in single cells по Alistair B. Russell, Cole Trapnell, Jesse D. Bloom

    Опубликовано 2018
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    Artigo
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  10. 10
    Improving RNA-Seq expression estimates by correcting for fragment bias

    Improving RNA-Seq expression estimates by correcting for fragment bias по Adam Roberts, Cole Trapnell, Julie Donaghey, John L. Rinn, Lior Pachter

    Опубликовано 2011
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  11. 11
    Sci-fate characterizes the dynamics of gene expression in single cells

    Sci-fate characterizes the dynamics of gene expression in single cells по Junyue Cao, Wei Zhou, Frank J. Steemers, Cole Trapnell, Jay Shendure

    Опубликовано 2020
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    Artigo
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  12. 12
    Dimensionality reduction by UMAP to visualize physical and genetic interactions

    Dimensionality reduction by UMAP to visualize physical and genetic interactions по Michael W. Dorrity, Lauren M. Saunders, Christine Queitsch, Stanley Fields, Cole Trapnell

    Опубликовано 2020
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  13. 13
    TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

    TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions по Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L. Salzberg

    Опубликовано 2013
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    Artigo
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  14. 14
    Single-cell mRNA quantification and differential analysis with Census

    Single-cell mRNA quantification and differential analysis with Census по Xiaojie Qiu, Andrew J. Hill, Jonathan S. Packer, Dejun Lin, Yi-An Ma, Cole Trapnell

    Опубликовано 2017
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  15. 15
    Trajectory analysis quantifies transcriptional plasticity during macrophage polarization

    Trajectory analysis quantifies transcriptional plasticity during macrophage polarization по Serena X. Liu, Heather H. Gustafson, Dana L. Jackson, Suzie H. Pun, Cole Trapnell

    Опубликовано 2020
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    Artigo
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  16. 16
    Differential analysis of gene regulation at transcript resolution with RNA-seq

    Differential analysis of gene regulation at transcript resolution with RNA-seq по Cole Trapnell, David G. Hendrickson, Martin Sauvageau, Loyal A. Goff, John L. Rinn, Lior Pachter

    Опубликовано 2012
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    Artigo
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  17. 17
    Reversed graph embedding resolves complex single-cell developmental trajectories

    Reversed graph embedding resolves complex single-cell developmental trajectories по Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A. Pliner, Cole Trapnell

    Опубликовано 2017
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  18. 18
    Reversed graph embedding resolves complex single-cell trajectories

    Reversed graph embedding resolves complex single-cell trajectories по Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A. Pliner, Cole Trapnell

    Опубликовано 2017
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    Artigo
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  19. 19
    A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition

    A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition по José L. McFaline‐Figueroa, Andrew J. Hill, Xiaojie Qiu, Dana L. Jackson, Jay Shendure, Cole Trapnell

    Опубликовано 2019
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  20. 20
    Single-cell sequencing of individual retinal organoids reveals determinants of cell-fate heterogeneity

    Single-cell sequencing of individual retinal organoids reveals determinants of cell-fate heterogeneity по Amy Tresenrider, Akshayalakshmi Sridhar, Kiara C. Eldred, Sophia A. Cuschieri, Dawn Hoffer, Cole Trapnell, Thomas A. Reh

    Опубликовано 2023
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