Search Results - Clarice S. Groeneveld

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  1. 1
    <i>RTNsurvival</i>: an R/Bioconductor package for regulatory network survival analysis

    <i>RTNsurvival</i>: an R/Bioconductor package for regulatory network survival analysis by Clarice S. Groeneveld, Vinicius S Chagas, Steven J.M. Jones, A. Gordon Robertson, Bruce A.J. Ponder, Kerstin B. Meyer, Mauro A. A. Castro

    Published 2019
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  2. 2
    <i>RTNduals</i>: an R/Bioconductor package for analysis of co-regulation and inference of <i>dual regulons</i>

    <i>RTNduals</i>: an R/Bioconductor package for analysis of co-regulation and inference of <i>dual regulons</i> by Vinicius S Chagas, Clarice S. Groeneveld, Kelin Gonçalves de Oliveira, Sheyla Trefflich, Rodrigo Coutinho de Almeida, Bruce A.J. Ponder, Kerstin B. Meyer, Steven J.M. Jones, A. Gordon Robertson, Mauro A. A. Castro

    Published 2019
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  3. 3
    Novel lncRNAs Co-Expression Networks Identifies LINC00504 with Oncogenic Role in Luminal A Breast Cancer Cells

    Novel lncRNAs Co-Expression Networks Identifies LINC00504 with Oncogenic Role in Luminal A Breast Cancer Cells by Carolina Mathias, Clarice S. Groeneveld, Sheyla Trefflich, Érika Pereira Zambalde, Rubens Silveira de Lima, Cícero Úrban, Karin Braun-Prado, Enilze M.S.F. Ribeiro, Mauro A. A. Castro, Daniela Fiori Gradia, Jaqueline Carvalho de Oliveira

    Published 2021
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  4. 4
    A transcriptional network of cell cycle dysregulation in noninvasive papillary urothelial carcinoma

    A transcriptional network of cell cycle dysregulation in noninvasive papillary urothelial carcinoma by Joshua I. Warrick, Margaret A. Knowles, Carolyn D. Hurst, Lauren Shuman, Jay D. Raman, Vonn Walter, Jeffrey Putt, Lars Dyrskjøt, Clarice S. Groeneveld, Mauro A. A. Castro, A. Gordon Robertson, David J. DeGraff

    Published 2022
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  5. 5
    Identification of Differential Tumor Subtypes of T1 Bladder Cancer

    Identification of Differential Tumor Subtypes of T1 Bladder Cancer by A. Gordon Robertson, Clarice S. Groeneveld, Brian J. Jordan, Xiquo Lin, Kimberly A. McLaughlin, Arighno Das, Leigh Ann Fall, Damiano Fantini, Timothy Taxter, Lauren S. Mogil, Sia V. Lindskrog, Lars Dyrskjøt, David J. McConkey, Robert S. Svatek, Aurélien de Reyniès, Mauro A. A. Castro, Joshua J. Meeks

    Published 2020
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  6. 6
    Expression-based subtypes define pathologic response to neoadjuvant immune-checkpoint inhibitors in muscle-invasive bladder cancer

    Expression-based subtypes define pathologic response to neoadjuvant immune-checkpoint inhibitors in muscle-invasive bladder cancer by A. Gordon Robertson, Khyati Meghani, Lauren Folgosa Cooley, Kimberly A. McLaughlin, Leigh Ann Fall, Yanni Yu, Mauro A. A. Castro, Clarice S. Groeneveld, Aurélien de Reyniès, Vadim I. Nazarov, Vasily O. Tsvetkov, Bonnie Choy, Daniele Raggi, Laura Marandino, Francesco Montorsi, Thomas Powles, Andrea Necchi, Joshua J. Meeks

    Published 2023
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  7. 7
    Proteogenomic Characterization of Bladder Cancer Reveals Sensitivity to Apoptosis Induced by Tumor Necrosis Factor–related Apoptosis-inducing Ligand in FGFR3-mutated Tumors

    Proteogenomic Characterization of Bladder Cancer Reveals Sensitivity to Apoptosis Induced by Tumor Necrosis Factor–related Apoptosis-inducing Ligand in FGFR3-mutated Tumors by Clarice S. Groeneveld, Virginia Sánchez‐Quiles, Florent Dufour, Mingjun Shi, Florent Dingli, Rémy Nicolle, Elodie Chapeaublanc, Patrick Poullet, Daniel Jeffery, Clémentine Krucker, Pascale Maillé, Francis Vacherot, Dimitri Vordos, Simone Benhamou, Thierry Lebrét, Olivier Micheau, Andreï Zinovyev, Damarys Loew, Yves Allory, Aurélien de Reyniès, Isabelle Bernard‐Pierrot, François Radvanyi

    Published 2023
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  8. 8
    Long non-coding RNAs identify a subset of luminal muscle-invasive bladder cancer patients with favorable prognosis

    Long non-coding RNAs identify a subset of luminal muscle-invasive bladder cancer patients with favorable prognosis by Joep J. de Jong, Yang Liu, A. Gordon Robertson, Roland Seiler, Clarice S. Groeneveld, Michiel S. van der Heijden, Jonathan L. Wright, James J. Douglas, Marc Dall’Era, Simon J. Crabb, Bas W.G. van Rhijn, Kim E.M. van Kessel, Elai Davicioni, Mauro A. A. Castro, Yair Lotan, Ellen C. Zwarthoff, Peter C. Black, Joost L. Boormans, Ewan A. Gibb

    Published 2019
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  9. 9
    The consensus molecular classification of muscle-invasive bladder cancer

    The consensus molecular classification of muscle-invasive bladder cancer by Aurélie Kamoun, Aurélien de Reyniès, Yves Allory, Gottfrid Sjödahl, A. Gordon Robertson, Roland Seiler, Katherine A. Hoadley, Hikmat Al‐Ahmadie, Woonyoung Choi, Clarice S. Groeneveld, Mauro A. A. Castro, Jacqueline Fontugne, Pontus Eriksson, Qianxing Mo, Jordan Kardos, Alexandre R. Zlotta, Arndt Hartmann, Colin P. Dinney, Joaquim Bellmunt, Thomas Powles, Núria Malats, Keith Syson Chan, William Y. Kim, David J. McConkey, Peter C. Black, Lars Dyrskjøt, Mattias Höglund, Seth P. Lerner, Francisco X. Real, François Radvanyi

    Published 2018
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  10. 10
    A Consensus Molecular Classification of Muscle-Invasive Bladder Cancer

    A Consensus Molecular Classification of Muscle-Invasive Bladder Cancer by Aurélie Kamoun, Aurélien de Reyniès, Yves Allory, Gottfrid Sjödahl, A. Gordon Robertson, Roland Seiler, Katherine A. Hoadley, Hikmat Al‐Ahmadie, Woonyoung Choi, Clarice S. Groeneveld, Mauro A. A. Castro, Jacqueline Fontugne, Pontus Eriksson, Qianxing Mo, Jordan Kardos, Alexandre R. Zlotta, Arndt Hartmann, Colin P. Dinney, Joaquim Bellmunt, Thomas Powles, Núria Malats, Keith Syson Chan, William Y. Kim, David J. McConkey, Peter C. Black, Lars Dyrskjøt, Mattias Höglund, Seth P. Lerner, Francisco X. Real, François Radvanyi, The Bladder Cancer Molecular Taxonomy Group

    Published 2019
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  11. 11
    A Consensus Molecular Classification of Muscle-invasive Bladder Cancer

    A Consensus Molecular Classification of Muscle-invasive Bladder Cancer by Aurélie Kamoun, Aurélien de Reyniès, Yves Allory, Gottfrid Sjödahl, A. Gordon Robertson, Roland Seiler, Katherine A. Hoadley, Clarice S. Groeneveld, Hikmat Al-Ahmadie, Woonyoung Choi, Mauro A.A. Castro, Jacqueline Fontugne, Pontus Eriksson, Qianxing Mo, Jordan Kardos, Alexandre Zlotta, Arndt Hartmann, Colin P. Dinney, Joaquim Bellmunt, Thomas Powles, Núria Malats, Keith Syson Chan, William Y. Kim, David J. McConkey, Peter C. Black, Lars Dyrskjøt, Mattias Höglund, Seth P. Lerner, Francisco X. Real, François Radvanyi, Mattias Aine, Hikmat Al-Ahmadie, Yves Allory, Joaquim Bellmunt, Isabelle Bernard-Pierrot, Peter C. Black, Mauro A.A. Castro, Keith Syson Chan, Woonyoung Choi, Bogdan Czerniak, Colin P. Dinney, Lars Dyrskjøt, Pontus Eriksson, Jacqueline Fontugne, Ewan A. Gibb, Clarice S. Groeneveld, Arndt Hartmann, Katherine A. Hoadley, Mattias Höglund, Aurélie Kamoun, Jordan Kardos, Jaegil Kim, William Y. Kim, David J. Kwiatkowski, Thierry Lebrét, Seth P. Lerner, Fredrik Liedberg, Núria Malats, David J. McConkey, Qianxing Mo, Thomas Powles, François Radvanyi, Francisco X. Real, Aurélien de Reyniès, A. Gordon Robertson, Arlene O. Siefker‐Radtke, Nanor Sirab, Roland Seiler, Gottfrid Sjödahl, Ann Taber, John N. Weinstein, Alexandre Zlotta

    Published 2019
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  12. 12
    Reply To Kenneth B. Yatai, Mark J. Dunning, Dennis Wang. Consensus Genomic Subtypes of Muscle-invasive Bladder Cancer: A Step in the Right Direction but Still a Long Way To Go. Eur Urol 2020;77:434–5

    Reply To Kenneth B. Yatai, Mark J. Dunning, Dennis Wang. Consensus Genomic Subtypes of Muscle-invasive Bladder Cancer: A Step in the Right Direction but Still a Long Way To Go. Eur... by Aurélie Kamoun, Aurélien de Reyniès, Yves Allory, Gottfrid Sjödahl, A. Gordon Robertson, Roland Seiler, Katherine A. Hoadley, Clarice S. Groeneveld, Hikmat Al‐Ahmadie, Woonyoung Choi, Mauro A. A. Castro, Jacqueline Fontugne, Pontus Eriksson, Qianxing Mo, Jordan Kardos, Alexandre R. Zlotta, Arndt Hartmann, Colin P. Dinney, Joaquim Bellmunt, Thomas Powles, Núria Malats, Keith Syson Chan, William Y. Kim, David J. McConkey, Peter C. Black, Lars Dyrskjøt, Mattias Höglund, Seth P. Lerner, Francisco X. Real, François Radvanyi, Mattias Aine, Isabelle Bernard‐Pierrot, Bogdan Czerniak, Ewan A. Gibb, Jaegil Kim, David J. Kwiatkowski, Thierry Lebrét, Fredrik Liedberg, Arlene O. Siefker‐Radtke, Nanor Sirab, Ann Taber, John N. Weinstein

    Published 2020
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  13. 13
    An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer

    An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer by Sia V. Lindskrog, Frederik Prip, Philippe Lamy, Ann Taber, Clarice S. Groeneveld, Karin Birkenkamp‐Demtröder, Jørgen Bjerggaard Jensen, Trine Strandgaard, Iver Nordentoft, Emil Christensen, Mateo Sokač, Nicolai J. Birkbak, Lasse Maretty, Gregers G. Hermann, Astrid Petersen, Veronika Weyerer, Marc‐Oliver Grimm, Marcus Horstmann, Gottfrid Sjödahl, Mattias Höglund, Torben Steiniche, Karin Mogensen, Aurélien de Reyniès, Roman Nawroth, Brian J. Jordan, Xiaoqi Lin, Dejan Dragičević, Douglas G. Ward, Anshita Goel, Carolyn D. Hurst, Jay D. Raman, Joshua I. Warrick, Ulrika Segersten, Danijel Sikic, Kim E.M. van Kessel, Tobias Maurer, Joshua J. Meeks, David J. DeGraff, Richard T. Bryan, Margaret A. Knowles, Tatjana Simić, Arndt Hartmann, Ellen C. Zwarthoff, Per‐Uno Malmström, Núria Malats, Francisco X. Real, Lars Dyrskjøt

    Published 2021
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  14. 14
    The chromatin accessibility landscape of primary human cancers

    The chromatin accessibility landscape of primary human cancers by M. Ryan Corces, Jeffrey M. Granja, Shadi Shams, Bryan H. Louie, José A. Seoane, Wanding Zhou, Tiago C. Silva, Clarice S. Groeneveld, Christopher K. Wong, Seung Woo Cho, Ansuman T. Satpathy, Maxwell R. Mumbach, Katherine A. Hoadley, A. Gordon Robertson, Nathan C. Sheffield, Ina Felau, Mauro A. A. Castro, Benjamin P. Berman, Louis M. Staudt, Jean C. Zenklusen, Peter W. Laird, Christina Curtis, William J. Greenleaf, Howard Y. Chang, Rehan Akbani, Christopher C. Benz, Evan A. Boyle, Bradley M. Broom, Andrew D. Cherniack, Brian Craft, John A. Demchok, Ashley S. Doane, Olivier Elemento, Martin L. Ferguson, Mary J. Goldman, D. Neil Hayes, Jing He, Toshinori Hinoue, Marcin Imieliński, Steven J.M. Jones, Anab Kemal, Theo Knijnenburg, Anil Korkut, De‐Chen Lin, Yuexin Liu, M.K.A. Mensah, Gordon B. Mills, Vincent Reuter, André Schultz, Hui Shen, Jason P. Smith, Roy Tarnuzzer, Sheyla Trefflich, Linghua Wang, John N. Weinstein, Lindsay Westlake, Jin Xu, Liming Yang, Christina Yau, Zhao Yang, Jingchun Zhu

    Published 2018
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