Ohcanbohtosat - Ching, Travers

Pan-cancer analysis of expressed somatic nucleotide variants in long intergenic non-coding RNA Dahkki Ching, Travers, Garmire, Lana X.

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Power analysis and sample size estimation for RNA-Seq differential expression Dahkki Ching, Travers, Huang, Sijia, Garmire, Lana X.

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Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data Dahkki Ching, Travers, Zhu, Xun, Garmire, Lana X.

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Using epigenomics data to predict gene expression in lung cancer Dahkki Li, Jeffery, Ching, Travers, Huang, Sijia, Garmire, Lana X

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Single-Cell Transcriptomics Bioinformatics and Computational Challenges Dahkki Poirion, Olivier B., Zhu, Xun, Ching, Travers, Garmire, Lana

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Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage Dahkki Poirion, Olivier, Zhu, Xun, Ching, Travers, Garmire, Lana X.

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A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer Dahkki Huang, Sijia, Yee, Cameron, Ching, Travers, Yu, Herbert, Garmire, Lana X.

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mirMark: a site-level and UTR-level classifier for miRNA target prediction Dahkki Menor, Mark, Ching, Travers, Zhu, Xun, Garmire, David, Garmire, Lana X

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Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization Dahkki Zhu, Xun, Ching, Travers, Pan, Xinghua, Weissman, Sherman M., Garmire, Lana

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kMulti-modal meta-analysis of 1494 hepatocellular carcinoma samples reveals significant impact of consensus driver genes on phenotypes Dahkki Chaudhary, Kumardeep, Poirion, Olivier B., Lu, Liangqun, Huang, Sijia, Ching, Travers, Garmire, Lana X

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Genome-wide hypermethylation coupled with promoter hypomethylation in the chorioamniotic membranes of early onset pre-eclampsia Dahkki Ching, Travers, Song, Min-Ae, Tiirikainen, Maarit, Molnar, Janos, Berry, Marla, Towner, Dena, Garmire, Lana X.

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Maternal cardiovascular-related single nucleotide polymorphisms, genes, and pathways associated with early-onset preeclampsia Dahkki Benny, Paula, Yamasato, Kelly, Yunits, Breck, Zhu, Xun, Ching, Travers, Garmire, Lana X., Berry, Marla J., Towner, Dena

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Genome-scale hypomethylation in the cord blood DNAs associated with early onset preeclampsia Dahkki Ching, Travers, Ha, James, Song, Min-Ae, Tiirikainen, Maarit, Molnar, Janos, Berry, Marla J, Towner, Dena, Garmire, Lana X

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Pan-Cancer Analyses Reveal Long Intergenic Non-Coding RNAs Relevant to Tumor Diagnosis, Subtyping and Prognosis Dahkki Ching, Travers, Peplowska, Karolina, Huang, Sijia, Zhu, Xun, Shen, Yi, Molnar, Janos, Yu, Herbert, Tiirikainen, Maarit, Fogelgren, Ben, Fan, Rong, Garmire, Lana X.

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A Novel FGFR3 Splice Variant Preferentially Expressed in African American Prostate Cancer Drives Aggressive Phenotypes and Docetaxel Resistance Dahkki Olender, Jacqueline, Wang, Bi-Dar, Ching, Travers, Garmire, Lana X., Garofano, Kaitlin, Ji, Youngmi, Knox, Tessa, Latham, Patricia, Nguyen, Kenneth, Rhim, Johng, Lee, Norman H.

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Analysis of Microarray Data on Gene Expression and Methylation to Identify Long Non-coding RNAs in Non-small Cell Lung Cancer Dahkki Feng, Nannan, Ching, Travers, Wang, Yu, Liu, Ben, Lin, Hongyan, Shi, Oumin, Zhang, Xiaohong, Zheng, Min, Zheng, Xin, Gao, Ming, Zheng, Zhi-jie, Yu, Herbert, Garmire, Lana, Qian, Biyun

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Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer Dahkki Wang, Bi-Dar, Ceniccola, Kristin, Hwang, SuJin, Andrawis, Ramez, Horvath, Anelia, Freedman, Jennifer A., Olender, Jacqueline, Knapp, Stefan, Ching, Travers, Garmire, Lana, Patel, Vyomesh, Garcia-Blanco, Mariano A., Patierno, Steven R., Lee, Norman H.

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Corrigendum: Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer Dahkki Wang, Bi-Dar, Ceniccola, Kristin, Hwang, SuJin, Andrawis, Ramez, Horvath, Anelia, Freedman, Jennifer A., Olender, Jacqueline, Knapp, Stefan, Ching, Travers, Garmire, Lana, Patel, Vyomesh, Garcia-Blanco, Mariano A., Patierno, Steven R., Lee, Norman H.

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Minimal Residual Disease Dynamics after Venetoclax-Obinutuzumab Treatment: Extended Off-Treatment Follow-up From the Randomized CLL14 Study Dahkki Al-Sawaf, Othman, Zhang, Can, Lu, Tong, Liao, Michael Z., Panchal, Anesh, Robrecht, Sandra, Ching, Travers, Tandon, Maneesh, Fink, Anna-Maria, Tausch, Eugen, Schneider, Christof, Ritgen, Matthias, Böttcher, Sebastian, Kreuzer, Karl-Anton, Chyla, Brenda, Miles, Dale, Wendtner, Clemens-Martin, Eichhorst, Barbara, Stilgenbauer, Stephan, Jiang, Yanwen, Hallek, Michael, Fischer, Kirsten

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Th17 cells transdifferentiate into regulatory T cells during resolution of inflammation Dahkki Gagliani, Nicola, Vesely, Maria Carolina Amezcua, Iseppon, Andrea, Brockmann, Leonie, Xu, Hao, Palm, Noah W., de Zoete, Marcel R., Licona-Limón, Paula, Paiva, Ricardo S., Ching, Travers, Weaver, Casey, Zi, Xiaoyuan, Pan, Xinghua, Fan, Rong, Garmire, Lana X., Cotton, Matthew J., Drier, Yotam, Bernstein, Bradley, Geginat, Jens, Stockinger, Brigitta, Esplugues, Enric, Huber, Samuel, Flavell, Richard A.

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