Search Results - Chen-Shan Chin

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  1. 1
    Human Genome Assembly in 100 Minutes

    Human Genome Assembly in 100 Minutes by Chen-Shan Chin, Asif Khalak

    Published 2019
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  2. 2
    Ribbon: Visualizing complex genome alignments and structural variation

    Ribbon: Visualizing complex genome alignments and structural variation by Maria Nattestad, Chen-Shan Chin, Michael C. Schatz

    Published 2016
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  3. 3
    Ribbon: intuitive visualization for complex genomic variation

    Ribbon: intuitive visualization for complex genomic variation by Maria Nattestad, Robert Aboukhalil, Chen-Shan Chin, Michael C. Schatz

    Published 2020
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  4. 4
    Global identification of noncoding RNAs in <i>Saccharomyces cerevisiae</i> by modulating an essential RNA processing pathway

    Global identification of noncoding RNAs in <i>Saccharomyces cerevisiae</i> by modulating an essential RNA processing pathway by Manoj P. Samanta, Waraporn Tongprasit, Himanshu Sethi, Chen-Shan Chin, Viktor Štolc

    Published 2006
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  5. 5
    A flexible and efficient template format for circular consensus sequencing and SNP detection

    A flexible and efficient template format for circular consensus sequencing and SNP detection by Kevin Travers, Chen-Shan Chin, David R. Rank, John Eid, Steve Turner

    Published 2010
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  6. 6
    Genomic variant benchmark: if you cannot measure it, you cannot improve it

    Genomic variant benchmark: if you cannot measure it, you cannot improve it by Sina Majidian, Daniel Paiva Agustinho, Chen-Shan Chin, Fritz J. Sedlazeck, Medhat Mahmoud

    Published 2023
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  7. 7
    Racial and socioeconomic disparities in the selection of prostate brachytherapy

    Racial and socioeconomic disparities in the selection of prostate brachytherapy by Schreiber, David, Chen, Shan-Chin, Rineer, Justin, Weiss, Jeffrey, Rotman, Marvin, Schwartz, David

    Published 2013
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  8. 8
    Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

    Assembling large genomes with single-molecule sequencing and locality-sensitive hashing by Konstantin Berlin, Sergey Koren, Chen-Shan Chin, James Drake, Jane M. Landolin, Adam M. Phillippy

    Published 2015
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  9. 9
    Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing

    Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing by Konstantin Berlin, Sergey Koren, Chen-Shan Chin, James Drake, Jane M. Landolin, Adam M. Phillippy

    Published 2014
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  10. 10
    Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes

    Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes by Chen-Shan Chin, Sairam Behera, Asif Khalak, Fritz J. Sedlazeck, Peter H. Sudmant, Justin Wagner, Justin M. Zook

    Published 2023
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  11. 11
    <i>De novo</i> PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads

    <i>De novo</i> PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads by Jonas Korlach, Gregory Gedman, Sarah B. Kingan, Chen-Shan Chin, Jason T. Howard, Jean‐Nicolas Audet, Lindsey Cantin, Erich D. Jarvis

    Published 2017
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  12. 12
    Gene expression patterns during adaptation of a helminth parasite to different environmental niches

    Gene expression patterns during adaptation of a helminth parasite to different environmental niches by Emmitt R. Jolly, Chen-Shan Chin, Steve Miller, Mahmoud Mohamed Bahgat, K. C. Lim, Joseph L. DeRisi, James H. McKerrow

    Published 2007
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  13. 13
    Comparing genomic expression patterns across species identifies shared transcriptional profile in aging

    Comparing genomic expression patterns across species identifies shared transcriptional profile in aging by Steven A. McCarroll, Coleen T. Murphy, Sige Zou, Scott D. Pletcher, Chen-Shan Chin, Yuh Nung Jan, Cynthia Kenyon, Cornelia I. Bargmann, Hao Li

    Published 2004
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  14. 14
    Recurrent evolution and selection shape structural diversity at the amylase locus

    Recurrent evolution and selection shape structural diversity at the amylase locus by Davide Bolognini, Alma Halgren, Runyang Nicolas Lou, Alessandro Raveane, Joana L. Rocha, Andrea Guarracino, Nicole Soranzo, Chen-Shan Chin, Erik Garrison, Peter H. Sudmant

    Published 2024
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  15. 15
    Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

    Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity by Ida Höijer, Josefin Johansson, Sanna Gudmundsson, Chen-Shan Chin, Ignas Bunikis, Susana Häggqvist, Anastasia Emmanouilidou, Maria Wilbe, Marcel den Hoed, Marie-Louise Bondeson, Lars Feuk, Ulf Gyllensten, Adam Ameur

    Published 2020
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  16. 16
    Long-read whole-genome analysis of human single cells

    Long-read whole-genome analysis of human single cells by Joanna Hård, Jeff E. Mold, Jesper Eisfeldt, Christian Tellgren‐Roth, Susana Häggqvist, Ignas Bunikis, Orlando Contreras‐López, Chen-Shan Chin, Jessica Nordlund, Carl‐Johan Rubin, Lars Feuk, Jakob Michaëlsson, Adam Ameur

    Published 2023
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  17. 17
    HLA Typing for the Next Generation

    HLA Typing for the Next Generation by Neema P. Mayor, James Robinson, Alasdair McWhinnie, Swati Ranade, Kevin Eng, William Midwinter, Will P. Bultitude, Chen-Shan Chin, Brett Bowman, Patrick Marks, Henny Braund, J. Alejandro Madrigal, Katy Latham, Steven G. E. Marsh

    Published 2015
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  18. 18
    Extending reference assembly models

    Extending reference assembly models by Deanna M. Church, Valérie Schneider, Karyn Meltz Steinberg, Michael C. Schatz, Aaron R. Quinlan, Chen-Shan Chin, Paul Kitts, Bronwen Aken, Gábor Marth, Michael M. Hoffman, Javier Herrero, Marie Lisandra Zepeda Mendoza, Richard Durbin, Paul Flicek

    Published 2015
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  19. 19
    Long-read, whole-genome shotgun sequence data for five model organisms

    Long-read, whole-genome shotgun sequence data for five model organisms by Kristi E. Kim, Paul Peluso, Primo Babayan, P. Jane Yeadon, Charles Yu, William W. Fisher, Chen-Shan Chin, Nicole A. Rapicavoli, David R. Rank, Joaquim Li, David Catcheside, S Celniker, Adam M. Phillippy, Casey Bergman, Jane M. Landolin

    Published 2014
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  20. 20
    Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia

    Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia by Catherine C. Smith, Qi Wang, Chen-Shan Chin, Sara Salerno, Lauren E. Damon, Mark J. Levis, Alexander E. Perl, Kevin Travers, Susana Wang, Jeremy P. Hunt, Patrick P. Zarrinkar, Eric E. Schadt, Andrew Kasarskis, John Kuriyan, Neil P. Shah

    Published 2012
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