Search Results - Carson Holt

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  1. 1
    MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

    MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects by Carson Holt, Mark Yandell

    Published 2011
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  2. 2
    Genome Annotation and Curation Using MAKER and MAKER‐P

    Genome Annotation and Curation Using MAKER and MAKER‐P by Michael S. Campbell, Carson Holt, Barry Moore, Mark Yandell

    Published 2014
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  3. 3
    Quantitative measures for the management and comparison of annotated genomes

    Quantitative measures for the management and comparison of annotated genomes by Karen Eilbeck, Barry Moore, Carson Holt, Mark Yandell

    Published 2009
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  4. 4
    MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

    MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes by Brandi L. Cantarel, Ian Korf, Sofia Robb, Genı́s Parra, Eric J. Ross, Barry Moore, Carson Holt, Alejandro Sánchez Alvarado, Mark Yandell

    Published 2007
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  5. 5
    The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

    The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences by Allen Kovach, Jill L. Wegrzyn, Genı́s Parra, Carson Holt, George Bruening, Carol A. Loopstra, James Hartigan, Mark Yandell, Charles H. Langley, Ian Korf, David B. Neale

    Published 2010
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  6. 6
    Improved Genome Assembly and Annotation for the Rock Pigeon (<i>Columba livia</i>)

    Improved Genome Assembly and Annotation for the Rock Pigeon (<i>Columba livia</i>) by Carson Holt, Michael S. Campbell, David A. Keays, Nathaniel B. Edelman, Aurélie Kapusta, Emily Maclary, Eric T. Domyan, Alexander Suh, Wesley C. Warren, Mark Yandell, M. Thomas P. Gilbert, Michael D. Shapiro

    Published 2018
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  7. 7
    Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes

    Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes by Mei-Yee Law, Kevin L. Childs, Michael S. Campbell, Joshua C. Stein, Andrew Olson, Carson Holt, Nicholas Panchy, Jikai Lei, Dian Jiao, Carson M. Andorf, Carolyn J. Lawrence, Doreen Ware, Shin‐Han Shiu, Yanni Sun, Ning Jiang, Mark Yandell

    Published 2014
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  8. 8
    MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations

    MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations by Michael S. Campbell, Mei-Yee Law, Carson Holt, Joshua C. Stein, Gaurav D. Moghe, David E. Hufnagel, Jikai Lei, Rujira Achawanantakun, Dian Jiao, Carolyn J. Lawrence, Doreen Ware, Shin‐Han Shiu, Kevin L. Childs, Yanni Sun, Ning Jiang, Mark Yandell

    Published 2013
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  9. 9
    The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae

    The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae by David B. Neale, Patrick E. McGuire, Nicholas C. Wheeler, Kristian Stevens, Marc Crepeau, Charis Cardeno, Aleksey V. Zimin, Daniela Puiu, Geo Pertea, U. Uzay Sezen, Claudio Casola, Tomasz E. Koralewski, Robin Paul, Daniel González‐Ibeas, Sumaira Zaman, Richard Cronn, Mark Yandell, Carson Holt, Charles H. Langley, James A. Yorke, Steven L. Salzberg, Jill L. Wegrzyn

    Published 2017
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  10. 10
    The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution

    The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution by Jeramiah J. Smith, Nataliya Timoshevskaya, Chengxi Ye, Carson Holt, Melissa C. Keinath, Hugo J. Parker, Malcolm Cook, Jon E. Hess, Shawn R. Narum, Francesco Lamanna, Henrik Kaessmann, Vladimir A. Timoshevskiy, Courtney K. M. Waterbury, Cody Saraceno, Leanne M. Wiedemann, Sofia Robb, Carl Baker, Evan E. Eichler, Dorit Hockman, Tatjana Sauka‐Spengler, Mark Yandell, Robb Krumlauf, Greg Elgar, Chris T. Amemiya

    Published 2018
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  11. 11
    First fungal genome sequence from Africa: A preliminary analysis

    First fungal genome sequence from Africa: A preliminary analysis by Brenda D. Wingfield, Emma T. Steenkamp, Quentin C. Santana, Martin P. A. Coetzee, Stefan Bam, Irene Barnes, Chrizelle W. Beukes, Wai Chan, Lieschen De Vos, Gerda Fourie, Melanie Friend, Thomas R. Gordon, Darryl A. Herron, Carson Holt, Ian Korf, Marija Kvas, Simon H. Martin, X. Osmond Mlonyeni, Kershney Naidoo, Mmatshepho M. Phasha, Alisa Postma, Oleg N. Reva, Heidi Roos, Melissa C. Simpson, Stephanie Slinski, Bernard Slippers, René Sutherland, Nicolaas A. van der Merwe, Magriet A. van der Nest, Stephanus N. Venter, P. Markus Wilken, Mark Yandell, Renate Dorothea Zipfel, Mike J. Wingfield

    Published 2012
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  12. 12
    Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

    Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies by David B. Neale, Jill L. Wegrzyn, Kristian Stevens, Aleksey V. Zimin, Daniela Puiu, Marc Crepeau, Charis Cardeno, Maxim Koriabine, Ann Holtz-Morris, John D Liechty, Pedro J. Martínez‐García, Hans Vasquez-Gross, Brian Y Lin, Jacob J Zieve, W. Dougherty, Sara Fuentes‐Soriano, Le-Shin Wu, Don Gilbert, Guillaume Marçais, Michael Roberts, Carson Holt, Mark Yandell, John M. Davis, Katherine E. Smith, Jeffrey F. D. Dean, W. Walter Lorenz, Ross Whetten, Ronald R. Sederoff, Nicholas C. Wheeler, Patrick E. McGuire, Doreen Main, Carol A. Loopstra, Keithanne Mockaitis, Pieter DeJong, James A. Yorke, Steven L. Salzberg, Charles H. Langley

    Published 2014
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  13. 13
    Draft genome of the red harvester ant <i>Pogonomyrmex barbatus</i>

    Draft genome of the red harvester ant <i>Pogonomyrmex barbatus</i> by Chris R. Smith, Christopher D. Smith, Hugh M. Robertson, Martin Helmkampf, Aleksey V. Zimin, Mark Yandell, Carson Holt, Hao Hu, Ehab Abouheif, Richard Benton, Elizabeth Cash, Vincent Croset, Cameron R. Currie, Eran Elhaik, Christine G. Elsik, Marie-Julie Favé, Vilaiwan M. Fernandes, Joshua D. Gibson, Dan Graur, Wulfila Gronenberg, Kirk J. Grubbs, Darren E. Hagen, Ana Sofia Ibarraran Viniegra, Brian R. Johnson, Reed M. Johnson, Abderrahman Khila, Jay W. Kim, Kaitlyn A. Mathis, Monica Muñoz‐Torres, Marguerite C. Murphy, Julie A. Mustard, Rin Nakamura, Oliver Niehuis, Surabhi Nigam, Rick Overson, Jennifer E. Placek, Rajendhran Rajakumar, Justin Reese, Garret Suen, Shu Tao, Candice W. Torres, Neil D. Tsutsui, Lumi Viljakainen, Florian Wolschin, Jürgen Gadau

    Published 2011
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  14. 14
    The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

    The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle by Garret Suen, Clotilde Teiling, Lewyn Li, Carson Holt, Ehab Abouheif, Erich Bornberg‐Bauer, Pascal Bouffard, Eric J. Caldera, Elizabeth Cash, Amy Cavanaugh, Olgert Denas, Eran Elhaik, Marie-Julie Favé, Jürgen Gadau, Joshua D. Gibson, Dan Graur, Kirk J. Grubbs, Darren E. Hagen, Timothy T. Harkins, Martin Helmkampf, Hao Hu, Brian R. Johnson, Jay Kim, Sarah Marsh, Joseph A. Moeller, Monica Muñoz‐Torres, Marguerite C. Murphy, Meredith C. Naughton, Surabhi Nigam, Rick Overson, Rajendhran Rajakumar, Justin Reese, Jarrod J. Scott, Chris R. Smith, Shu Tao, Neil D. Tsutsui, Lumi Viljakainen, Lothar Wissler, Mark Yandell, Fabian Zimmer, James Taylor, Steven Slater, Sandra W. Clifton, Wesley C. Warren, Christine G. Elsik, Christopher D. Smith, George M. Weinstock, Nicole M. Gerardo, Cameron R. Currie

    Published 2011
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  15. 15
    Draft genome of the globally widespread and invasive Argentine ant ( <i>Linepithema humile</i> )

    Draft genome of the globally widespread and invasive Argentine ant ( <i>Linepithema humile</i> ) by Christopher D. Smith, Aleksey V. Zimin, Carson Holt, Ehab Abouheif, Richard Benton, Elizabeth Cash, Vincent Croset, Cameron R. Currie, Eran Elhaik, Christine G. Elsik, Marie‐Julie Favé, Vilaiwan M. Fernandes, Jürgen Gadau, Joshua D. Gibson, Dan Graur, Kirk J. Grubbs, Darren E. Hagen, Martin Helmkampf, Jo-Anne Holley, Hao Hu, Ana Sofia Ibarraran Viniegra, Brian R. Johnson, Reed M. Johnson, Abderrahman Khila, Jay W. Kim, Joseph G. Laird, Kaitlyn A. Mathis, Joseph A. Moeller, Monica Muñoz‐Torres, Marguerite C. Murphy, Rin Nakamura, Surabhi Nigam, Rick Overson, Jennifer E. Placek, Rajendhran Rajakumar, Justin Reese, Hugh M. Robertson, Chris R. Smith, Andrew V. Suarez, Garret Suen, Elissa L. Suhr, Shu Tao, Candice W. Torres, Ellen van Wilgenburg, Lumi Viljakainen, Kimberly K. O. Walden, Alexander L. Wild, Mark Yandell, James A. Yorke, Neil D. Tsutsui

    Published 2011
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  16. 16
    The Utah NeoSeq Project: a collaborative multidisciplinary program to facilitate genomic diagnostics in the neonatal intensive care unit

    The Utah NeoSeq Project: a collaborative multidisciplinary program to facilitate genomic diagnostics in the neonatal intensive care unit by Sabrina Malone Jenkins, Rachel Palmquist, Barry Moore, Steven E. Boyden, Thomas J. Nicholas, Pınar Bayrak‐Toydemir, Rong Mao, John J. Farrell, Carson Holt, Shawn Rynearson, Chelsea Solorzano, Alistair Ward, D. Hunter Best, Najla Al‐Sweel, Dawn Bentley, Luca Brunelli, Clement Y. Chow, Devin Close, Michael J. Cormier, Malia J. Deshotel, Jacob Durtschi, E Eide, Luaiva Floyd, E. D. Fredrickson, Makenzie L. Fulmer, Edgar J. Hernández, Ashley L. Kapron, Mary Anne Karren, Robert G. Lewis, Christine E. Miller, L. Charles Murtaugh, Kelsey Nicholson, Katherine Noble, Brendan O’Fallon, John O'shea, David C. Pattison, Brent S. Pedersen, B. Petersen, Bennet Peterson, Lucilla Pizzo, Hayley M. Reynolds, Paul M. Rindler, Carrie Torr, Ting Wen, H. Joseph Yost, Jian Zhao, Mark Yandell, Gábor Marth, Aaron R. Quinlan, John C. Carey, Brian J. Shayota, Martin Tristani‐Firouzi, Joshua L. Bonkowsky

    Published 2025
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  17. 17
    Genomic signatures of evolutionary transitions from solitary to group living

    Genomic signatures of evolutionary transitions from solitary to group living by Karen M. Kapheim, Hailin Pan, Cai Li, Steven L. Salzberg, Daniela Puiu, Tanja Magoč, Hugh M. Robertson, Matthew E. Hudson, Aarti Venkat, Brielle J. Fischman, Álvaro González Hernández, Mark Yandell, Daniel Ence, Carson Holt, George D. Yocum, William P. Kemp, Jordi Bosch, Robert M. Waterhouse, Evgeny M. Zdobnov, Eckart Stolle, Frank Bernhard Kraus, Sophie Helbing, Robin F. A. Moritz, Karl M. Glastad, Brendan G. Hunt, Michael A. D. Goodisman, Frank Hauser, Cornelis J.P. Grimmelikhuijzen, Daniel Guariz Pinheiro, Francis Morais Franco Nunes, Michelle Prioli Miranda Soares, Erica D. Tanaka, Zilá Luz Paulino Simões, Klaus Hartfelder, Jay D. Evans, Seth M. Barribeau, Reed M. Johnson, Jonathan H. Massey, Bruce R. Southey, Martin Hasselmann, Daniel Hamacher, Matthias Biewer, Clement F. Kent, Amro Zayed, Charles Blatti, Saurabh Sinha, J. Spencer Johnston, Shawn J. Hanrahan, Sarah D. Kocher, Jun Wang, Gene E. Robinson, Guojie Zhang

    Published 2015
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  18. 18
    Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

    Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution by Jeramiah J. Smith, Shigehiro Kuraku, Carson Holt, Tatjana Sauka‐Spengler, Ning Jiang, Michael S. Campbell, Mark Yandell, Tereza Manousaki, Axel Meyer, Ona Bloom, Jennifer R. Morgan, Joseph D. Buxbaum, Ravi Sachidanandam, Carrie A. Sims, Alexander S. Garruss, Malcolm Cook, Robb Krumlauf, Leanne M. Wiedemann, Stacia A. Sower, Wayne A. Decatur, Jeffrey A. Hall, Chris T. Amemiya, Nil Ratan Saha, Katherine M. Buckley, Jonathan P. Rast, Sabyasachi Das, Masayuki Hirano, Nathanael McCurley, Peng Guo, Nicolas Rohner, Clifford J. Tabin, Paul Piccinelli, Greg Elgar, Magali Ruffier, Bronwen Aken, Stephen M. J. Searle, Matthieu Muffato, Miguel Pignatelli, Javier Herrero, Matthew C. Jones, C. Titus Brown, Yu‐Wen Chung‐Davidson, Kaben G. Nanlohy, Scot Libants, Chu‐Yin Yeh, David W. McCauley, James A. Langeland, Zeev Pancer, Bernd Fritzsch, Pieter J. de Jong, Baoli Zhu, Lucinda Fulton, Brenda Theising, Paul Flicek, Marianne Bronner‐Fraser, Wesley C. Warren, Sandra W. Clifton, Richard K. Wilson, Weiming Li

    Published 2013
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