检索结果 - Can Alkan

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  1. 1
    Limitations of next-generation genome sequence assembly

    Limitations of next-generation genome sequence assembly 由 Can Alkan, Saba Sajjadian, Evan E. Eichler

    出版 2010
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  2. 2
    Genome structural variation discovery and genotyping

    Genome structural variation discovery and genotyping 由 Can Alkan, Bradley P. Coe, Evan E. Eichler

    出版 2011
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  3. 3
    Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

    Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes 由 Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Şahinalp

    出版 2009
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  4. 4
    Shouji: a fast and efficient pre-alignment filter for sequence alignment

    Shouji: a fast and efficient pre-alignment filter for sequence alignment 由 Mohammed Alser, Hasan Hassan, Akash Kumar, Onur Mutlu, Can Alkan

    出版 2019
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  5. 5
    Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions

    Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions 由 Damla Senol Cali, Jeremie S. Kim, Saugata Ghose, Can Alkan, Onur Mutlu

    出版 2018
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  6. 6
    Accelerating read mapping with FastHASH

    Accelerating read mapping with FastHASH 由 Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan

    出版 2013
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  7. 7
    Comparative analysis of <i>Alu</i> repeats in primate genomes

    Comparative analysis of <i>Alu</i> repeats in primate genomes 由 George E. Liu, Can Alkan, Jiang Lu, Shaying Zhao, Evan E. Eichler

    出版 2009
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  8. 8
    GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping

    GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping 由 Mohammed Alser, Hasan Hassan, Hongyi Xin, Oğuz Ergin, Onur Mutlu, Can Alkan

    出版 2017
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  9. 9
    mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications

    mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications 由 Faraz Hach, Iman Sarrafi, Farhad Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Şahinalp

    出版 2014
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  10. 10
    Fast characterization of segmental duplications in genome assemblies

    Fast characterization of segmental duplications in genome assemblies 由 Ibrahim Numanagić, Alim Şükrücan Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach

    出版 2018
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  11. 11
    Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping

    Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping 由 Hongyi Xin, John Greth, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu

    出版 2015
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  12. 12
    mrsFAST: a cache-oblivious algorithm for short-read mapping

    mrsFAST: a cache-oblivious algorithm for short-read mapping 由 Faraz Hach, Fereydoun Hormozdiari, Can Alkan, Farhad Hormozdiari, İnanç Birol, Evan E. Eichler, S. Cenk Şahinalp

    出版 2010
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  13. 13
    Accelerating Genome Analysis: A Primer on an Ongoing Journey

    Accelerating Genome Analysis: A Primer on an Ongoing Journey 由 Mohammed Alser, Zülal Bingöl, Damla Senol Cali, Jeremie Kim, Saugata Ghose, Can Alkan, Onur Mutlu

    出版 2020
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  14. 14
    Detection and characterization of novel sequence insertions using paired-end next-generation sequencing

    Detection and characterization of novel sequence insertions using paired-end next-generation sequencing 由 Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, İnanç Birol, Evan E. Eichler, S. Cenk Şahinalp

    出版 2010
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  15. 15
    Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm

    Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm 由 Can Fırtına, Jeremie S. Kim, Mohammed Alser, Damla Senol Cali, A. Ercüment Çiçek, Can Alkan, Onur Mutlu

    出版 2020
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  16. 16
    Early postzygotic mutations contribute to de novo variation in a healthy monozygotic twin pair

    Early postzygotic mutations contribute to de novo variation in a healthy monozygotic twin pair 由 Gülşah M Dal, Bekir Ergüner, Mahmut Şamil Sağıroğlu, Bayram Yüksel, Onur Emre Onat, Can Alkan, Tayfun Özçelık

    出版 2014
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  17. 17
    Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

    Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery 由 Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoğlu, Can Alkan, Evan E. Eichler, S. Cenk Şahinalp

    出版 2010
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  18. 18
    GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies

    GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies 由 Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oğuz Ergin, Can Alkan, Onur Mutlu

    出版 2018
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  19. 19
    Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome

    Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome 由 Ge Liu, NISC Comparative Sequencing Program, Shaying Zhao, Jeffrey A. Bailey, S. Cenk Şahinalp, Can Alkan, Eray Tüzün, Eric D. Green, Evan E. Eichler

    出版 2003
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  20. 20
    Diversity of Human Copy Number Variation and Multicopy Genes

    Diversity of Human Copy Number Variation and Multicopy Genes 由 Peter H. Sudmant, Jacob O. Kitzman, Francesca Antonacci, Can Alkan, Maika Malig, Anya Tsalenko, Nick Sampas, Laurakay Bruhn, Jay Shendure, Evan E. Eichler

    出版 2010
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