Výsledky vyhledávání - Bohnuud, Tanggis

Evidence of Conformational Selection Driving the Formation of Ligand Binding Sites in Protein-Protein Interfaces Autor Bohnuud, Tanggis, Kozakov, Dima, Vajda, Sandor

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How Good is Automated Protein Docking? Autor Kozakov, Dima, Beglov, Dmitri, Bohnuud, Tanggis, Mottarella, Scott E., Xia, Bing, Hall, David R., Vajda, Sandor

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ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT Autor Porter, Kathryn A, Xia, Bing, Beglov, Dmitri, Bohnuud, Tanggis, Alam, Nawsad, Schueler-Furman, Ora, Kozakov, Dima

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Quantifying the nativeness of antibody sequences using long short-term memory networks Autor Wollacott, Andrew M, Xue, Chonghua, Qin, Qiuyuan, Hua, June, Bohnuud, Tanggis, Viswanathan, Karthik, Kolachalama, Vijaya B

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New Additions to the ClusPro Server Motivated by CAPRI Autor Vajda, Sandor, Yueh, Christine, Beglov, Dmitri, Bohnuud, Tanggis, Mottarella, Scott E., Xia, Bing, Hall, David R., Kozakov, Dima

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Detection of peptide-binding sites on protein surfaces: The first step towards the modeling and targeting of peptide-mediated interactions Autor Lavi, Assaf, Ngan, Chi Ho, Movshovitz-Attias, Dana, Bohnuud, Tanggis, Yueh, Christine, Beglov, Dmitri, Schueler-Furman, Ora, Kozakov, Dima

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A proteomic platform to identify off-target proteins associated with therapeutic modalities that induce protein degradation or gene silencing Autor Liu, Xin, Zhang, Ye, Ward, Lucas D., Yan, Qinghong, Bohnuud, Tanggis, Hernandez, Rocio, Lao, Socheata, Yuan, Jing, Fan, Fan

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FTMAP: extended protein mapping with user-selected probe molecules Autor Ngan, Chi Ho, Bohnuud, Tanggis, Mottarella, Scott E., Beglov, Dmitri, Villar, Elizabeth A., Hall, David R., Kozakov, Dima, Vajda, Sandor

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The FTMap family of web servers for determining and characterizing ligand binding hot spots of proteins Autor Kozakov, Dima, Grove, Laurie E., Hall, David R., Bohnuud, Tanggis, Mottarella, Scott, Luo, Lingqi, Xia, Bing, Beglov, Dmitri, Vajda, Sandor

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A benchmark testing ground for integrating homology modeling and protein docking Autor Bohnuud, Tanggis, Luo, Lingqi, Wodak, Shoshana J., Vajda, Sandor, Bonvin, Alexandre M.J.J., Weng, Zhiping, Schueler-Furman, Ora, Kozakov, Dima

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Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde Autor Bohnuud, Tanggis, Beglov, Dmitri, Ngan, Chi Ho, Zerbe, Brandon, Hall, David R., Brenke, Ryan, Vajda, Sandor, Frank-Kamenetskii, Maxim D., Kozakov, Dima

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Application of asymmetric statistical potentials to antibody–protein docking Autor Brenke, Ryan, Hall, David R., Chuang, Gwo-Yu, Comeau, Stephen R., Bohnuud, Tanggis, Beglov, Dmitri, Schueler-Furman, Ora, Vajda, Sandor, Kozakov, Dima

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Focused Grid-Based Resampling for Protein Docking and Mapping Autor Mamonov, Artem B., Moghadasi, Mohammad, Mirzaei, Hanieh, Zarbafian, Shahrooz, Grove, Laurie E., Bohnuud, Tanggis, Vakili, Pirooz, Paschalidis, Ioannis Ch., Vajda, Sandor, Kozakov, Dima

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Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment Autor Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.

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