Search Results - Birol, Inanc

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  1. 1
    Assembling genomes using short-read sequencing technology

    Assembling genomes using short-read sequencing technology by Jackman, Shaun D, Birol, İnanç

    Published 2010
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  2. 2
    HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the wuhan seafood market COVID-19 outbreak

    HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the wuhan seafood market COVID-19 outbreak by Warren, René L., Birol, Inanç

    Published 2020
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  3. 3
    HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset

    HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset by Warren, René L, Birol, Inanç

    Published 2020
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  4. 4
    Retrospective in silico HLA predictions from COVID-19 patients reveal alleles associated with disease prognosis

    Retrospective in silico HLA predictions from COVID-19 patients reveal alleles associated with disease prognosis by Warren, René L., Birol, Inanç

    Published 2020
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  5. 5
    Interactive SARS-COV-2 mutation timemaps

    Interactive SARS-COV-2 mutation timemaps by Warren, René L., Birol, Inanç

    Published 2020
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  6. 6
    Interactive SARS-CoV-2 mutation timemaps

    Interactive SARS-CoV-2 mutation timemaps by Warren, René L., Birol, Inanc

    Published 2021
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  7. 7
    HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort

    HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort by Warren, René L., Birol, Inanc

    Published 2021
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  8. 8
    Metabolic Control Analysis under Uncertainty: Framework Development and Case Studies

    Metabolic Control Analysis under Uncertainty: Framework Development and Case Studies by Wang, Liqing, Birol, İnanç, Hatzimanikatis, Vassily

    Published 2004
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  9. 9
    ntCard: a streaming algorithm for cardinality estimation in genomics data

    ntCard: a streaming algorithm for cardinality estimation in genomics data by Mohamadi, Hamid, Khan, Hamza, Birol, Inanc

    Published 2017
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  10. 10
    UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation

    UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation by Jackman, Shaun D., Bohlmann, Joerg, Birol, İnanç

    Published 2015
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  11. 11
    Fusion-Bloom: fusion detection in assembled transcriptomes

    Fusion-Bloom: fusion detection in assembled transcriptomes by Chiu, Readman, Nip, Ka Ming, Birol, Inanc

    Published 2020
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  12. 12
    Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

    Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies by Hajirasouliha, Iman, Hormozdiari, Fereydoun, Sahinalp, S. Cenk, Birol, Inanc

    Published 2008
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  13. 13
    ntHash: recursive nucleotide hashing

    ntHash: recursive nucleotide hashing by Mohamadi, Hamid, Chu, Justin, Vandervalk, Benjamin P., Birol, Inanc

    Published 2016
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  14. 14
    NanoSim: nanopore sequence read simulator based on statistical characterization

    NanoSim: nanopore sequence read simulator based on statistical characterization by Yang, Chen, Chu, Justin, Warren, René L, Birol, Inanç

    Published 2017
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  15. 15
    TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data

    TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data by Chiu, Readman, Nip, Ka Ming, Chu, Justin, Birol, Inanc

    Published 2018
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  16. 16
    Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline

    Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline by Hadj Khodabakhshi, Alireza, Fejes, Anthony P, Birol, Inanc, Jones, Steven JM

    Published 2013
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  17. 17
    Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art

    Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art by Chu, Justin, Mohamadi, Hamid, Warren, René L, Yang, Chen, Birol, Inanç

    Published 2017
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  18. 18
    ARCS: scaffolding genome drafts with linked reads

    ARCS: scaffolding genome drafts with linked reads by Yeo, Sarah, Coombe, Lauren, Warren, René L, Chu, Justin, Birol, Inanç

    Published 2018
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  19. 19
    ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

    ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs by Coombe, Lauren, Nikolić, Vladimir, Chu, Justin, Birol, Inanc, Warren, René L

    Published 2020
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  20. 20
    Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences

    Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences by Chiu, Readman, Rajan-Babu, Indhu-Shree, Friedman, Jan M., Birol, Inanc

    Published 2021
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