检索结果 - Benjamin P. Berman

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  1. 1
    Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes

    Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes 由 Lijing Yao, Benjamin P. Berman, Peggy Farnham

    出版 2015
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  2. 2
    Functional annotation of colon cancer risk SNPs

    Functional annotation of colon cancer risk SNPs 由 Lijing Yao, Yu Gyoung Tak, Benjamin P. Berman, Peggy Farnham

    出版 2014
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    Artigo
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  3. 3
    Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data

    Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data 由 Yaping Liu, Kimberly D. Siegmund, Peter W. Laird, Benjamin P. Berman

    出版 2012
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  4. 4
    Inferring regulatory element landscapes and transcription factor networks from cancer methylomes

    Inferring regulatory element landscapes and transcription factor networks from cancer methylomes 由 Lijing Yao, Hui Shen, Peter W. Laird, Peggy Farnham, Benjamin P. Berman

    出版 2015
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  5. 5
    FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs

    FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs 由 Simon G. Coetzee, Suhn K. Rhie, Benjamin P. Berman, Gerhard A. Coetzee, Houtan Noushmehr

    出版 2012
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  6. 6
    GENT-33. EPIGENETIC ALTERATIONS AT INTERGENIC REGIONS ASSOCIATED WITH PROGRESSION IN A SUBSET OF IDH MUTANT GLIOMAS

    GENT-33. EPIGENETIC ALTERATIONS AT INTERGENIC REGIONS ASSOCIATED WITH PROGRESSION IN A SUBSET OF IDH MUTANT GLIOMAS 由 Thaís S. Sabedot, Tathiane M. Malta, Michele Ceccarelli, Huy Dihn, Benjamin P. Berman, Houtan Noushmehr

    出版 2016
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  7. 7
    Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes

    Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes 由 Adam Blattler, Lijing Yao, Heather Witt, Yu Guo, Charles M. Nicolet, Benjamin P. Berman, Peggy Farnham

    出版 2014
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  8. 8
    Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules

    Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules 由 Theresa K. Kelly, Yaping Liu, Fides D. Lay, Gangning Liang, Benjamin P. Berman, Peter A. Jones

    出版 2012
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  9. 9
    TCGAbiolinksGUI: A graphical user interface to analyze GDC cancer molecular and clinical data

    TCGAbiolinksGUI: A graphical user interface to analyze GDC cancer molecular and clinical data 由 Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Gianluca Bontempi, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr

    出版 2017
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  10. 10
    Global analysis of patterns of gene expression during Drosophila embryogenesis

    Global analysis of patterns of gene expression during Drosophila embryogenesis 由 Pavel Tomančák, Benjamin P. Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, S Celniker, Gerald M. Rubin

    出版 2007
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  11. 11
    The role of DNA methylation in directing the functional organization of the cancer epigenome

    The role of DNA methylation in directing the functional organization of the cancer epigenome 由 Fides D. Lay, Yaping Liu, Theresa K. Kelly, Heather Witt, Peggy Farnham, Peter A. Jones, Benjamin P. Berman

    出版 2015
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  12. 12
    H2A.Z Maintenance during Mitosis Reveals Nucleosome Shifting on Mitotically Silenced Genes

    H2A.Z Maintenance during Mitosis Reveals Nucleosome Shifting on Mitotically Silenced Genes 由 Theresa K. Kelly, Tina Branscombe Miranda, Gangning Liang, Benjamin P. Berman, Joy Lin, Amos Tanay, Peter A. Jones

    出版 2010
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  13. 13
    Gender-specific postnatal demethylation and establishment of epigenetic memory

    Gender-specific postnatal demethylation and establishment of epigenetic memory 由 Yitzhak Reizel, Adam Spiro, Ofra Sabag, Yael Skversky‐Blocq, Merav Hecht, Ilana Keshet, Benjamin P. Berman, Howard Cedar

    出版 2015
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  14. 14
    Dynamic Nucleosome-Depleted Regions at Androgen Receptor Enhancers in the Absence of Ligand in Prostate Cancer Cells

    Dynamic Nucleosome-Depleted Regions at Androgen Receptor Enhancers in the Absence of Ligand in Prostate Cancer Cells 由 Claudia Andreu‐Vieyra, John Lai, Benjamin P. Berman, Baruch Frenkel, Jia Li, Peter A. Jones, Gerhard A. Coetzee

    出版 2011
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  15. 15
    Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

    Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobs... 由 Benjamin P. Berman, Barret D. Pfeiffer, Todd Laverty, Steven L. Salzberg, Gerald M. Rubin, Michael B. Eisen, S Celniker

    出版 2004
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    Artigo
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  16. 16
    Exosomal MicroRNA Transfer Into Macrophages Mediates Cellular Postconditioning

    Exosomal MicroRNA Transfer Into Macrophages Mediates Cellular Postconditioning 由 Geoffrey de Couto, Romain Gallet, Linda Cambier, Ervin Jaghatspanyan, Nupur Makkar, James Dawkins, Benjamin P. Berman, Eduardo Marbán

    出版 2017
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  17. 17
    Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the <i>Drosophila</i> genome

    Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the <i>Drosophila</i> genome 由 Benjamin P. Berman, Yutaka Nibu, Barret D. Pfeiffer, Pavel Tomančák, S Celniker, Michael Levine, Gerald M. Rubin, Michael B. Eisen

    出版 2002
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  18. 18
    TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data

    TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data 由 Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Tathiane M. Malta, Gianluca Bontempi, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr

    出版 2018
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  19. 19
    DNA methylation loss in late-replicating domains is linked to mitotic cell division

    DNA methylation loss in late-replicating domains is linked to mitotic cell division 由 Wanding Zhou, Huy Q. Dinh, Zachary Ramjan, Daniel J. Weisenberger, Charles M. Nicolet, Hui Shen, Peter W. Laird, Benjamin P. Berman

    出版 2018
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  20. 20
    ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles

    ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles 由 Tiago C. Silva, Simon G. Coetzee, Nicole Gull, Lijing Yao, Dennis J. Hazelett, Houtan Noushmehr, De‐Chen Lin, Benjamin P. Berman

    出版 2018
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