Search Results - Benjamin D. Greenbaum

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  1. 1
    Sequence-Specific Sensing of Nucleic Acids

    Sequence-Specific Sensing of Nucleic Acids by Nicolas Vabret, Nina Bhardwaj, Benjamin D. Greenbaum

    Published 2016
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  2. 2
    Computational Prediction and Validation of Tumor-Associated Neoantigens

    Computational Prediction and Validation of Tumor-Associated Neoantigens by Vladimir Roudko, Benjamin D. Greenbaum, Nina Bhardwaj

    Published 2020
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  3. 3
    Patterns of Oligonucleotide Sequences in Viral and Host Cell RNA Identify Mediators of the Host Innate Immune System

    Patterns of Oligonucleotide Sequences in Viral and Host Cell RNA Identify Mediators of the Host Innate Immune System by Benjamin D. Greenbaum, Raúl Rabadán, Arnold J. Levine

    Published 2009
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  4. 4
    The genotypes and phenotypes of missense mutations in the proline domain of the p53 protein

    The genotypes and phenotypes of missense mutations in the proline domain of the p53 protein by David Hoyos, Benjamin D. Greenbaum, Arnold J. Levine

    Published 2022
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  5. 5
    The origin of the recent swine influenza A(H1N1) virus infecting humans

    The origin of the recent swine influenza A(H1N1) virus infecting humans by Владимир Трифонов, Hossein Khiabanian, Benjamin D. Greenbaum, Raúl Rabadán

    Published 2009
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  6. 6
    Patterns of Evolution and Host Gene Mimicry in Influenza and Other RNA Viruses

    Patterns of Evolution and Host Gene Mimicry in Influenza and Other RNA Viruses by Benjamin D. Greenbaum, Arnold J. Levine, Gyan Bhanot, Raúl Rabadán

    Published 2008
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  7. 7
    Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus

    Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus by Ashley Sobel Leonard, Daniel B. Weissman, Benjamin D. Greenbaum, Elodie Ghedin, Katia Koelle

    Published 2017
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  8. 8
    Viral reassortment as an information exchange between viral segments

    Viral reassortment as an information exchange between viral segments by Benjamin D. Greenbaum, Olive T. W. Li, Leo L. M. Poon, Arnold J. Levine, Raúl Rabadán

    Published 2012
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  9. 9
    Ion efflux and influenza infection trigger NLRP3 inflammasome signaling in human dendritic cells

    Ion efflux and influenza infection trigger NLRP3 inflammasome signaling in human dendritic cells by Melissa V. Fernandez, Elizabeth A. Miller, Florian Krammer, Ramya Gopal, Benjamin D. Greenbaum, Nina Bhardwaj

    Published 2015
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  10. 10
    Lynch Syndrome and MSI-H Cancers: From Mechanisms to “Off-The-Shelf” Cancer Vaccines

    Lynch Syndrome and MSI-H Cancers: From Mechanisms to “Off-The-Shelf” Cancer Vaccines by Vladimir Roudko, Cansu Cimen Bozkus, Benjamin D. Greenbaum, Aimee L. Lucas, Robert M. Samstein, Nina Bhardwaj

    Published 2021
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  11. 11
    Oligonucleotide Motifs That Disappear during the Evolution of Influenza Virus in Humans Increase Alpha Interferon Secretion by Plasmacytoid Dendritic Cells

    Oligonucleotide Motifs That Disappear during the Evolution of Influenza Virus in Humans Increase Alpha Interferon Secretion by Plasmacytoid Dendritic Cells by Sonia Jiménez-Baranda, Benjamin D. Greenbaum, Olivier Manches, Jesse S. Handler, Raúl Rabadán, Arnold J. Levine, Nina Bhardwaj

    Published 2011
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  12. 12
    A tumor-specific endogenous repetitive element is induced by herpesviruses

    A tumor-specific endogenous repetitive element is induced by herpesviruses by Maciej T. Nogalski, Alexander Solovyov, Anupriya S. Kulkarni, Niyati Desai, Adam Oberstein, Arnold J. Levine, David T. Ting, Thomas Shenk, Benjamin D. Greenbaum

    Published 2019
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  13. 13
    Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses

    Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses by Naveen Kumar, Bidhan Chandra Bera, Benjamin D. Greenbaum, Sandeep Bhatia, Richa Sood, Selvaraj Pavulraj, Taruna Anand, Bhupendra Nath Tripathi, Nitin Virmani

    Published 2016
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  14. 14
    Evolution and Diversity in Human Herpes Simplex Virus Genomes

    Evolution and Diversity in Human Herpes Simplex Virus Genomes by Moriah L. Szpara, Derek Gatherer, Alejandro Ochoa, Benjamin D. Greenbaum, Aidan Dolan, Rory Bowden, Lynn W. Enquist, Matthieu Legendre, Andrew J. Davison

    Published 2013
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  15. 15
    Global Cancer Transcriptome Quantifies Repeat Element Polarization between Immunotherapy Responsive and T Cell Suppressive Classes

    Global Cancer Transcriptome Quantifies Repeat Element Polarization between Immunotherapy Responsive and T Cell Suppressive Classes by Alexander Solovyov, Nicolas Vabret, Kshitij S. Arora, Alexandra Snyder, Samuel A. Funt, Dean F. Bajorin, Jonathan E. Rosenberg, Nina Bhardwaj, David T. Ting, Benjamin D. Greenbaum

    Published 2018
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  16. 16
    Intrahost Dynamics of Antiviral Resistance in Influenza A Virus Reflect Complex Patterns of Segment Linkage, Reassortment, and Natural Selection

    Intrahost Dynamics of Antiviral Resistance in Influenza A Virus Reflect Complex Patterns of Segment Linkage, Reassortment, and Natural Selection by Matthew B. Rogers, Timothy Song, Robert Sebra, Benjamin D. Greenbaum, Marie‐Ève Hamelin, Adam Fitch, Alan Twaddle, Lijia Cui, Edward C. Holmes, Guy Boivin, Elodie Ghedin

    Published 2015
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  17. 17
    Prolonged SARS-CoV-2 Infection in Patients with Lymphoid Malignancies

    Prolonged SARS-CoV-2 Infection in Patients with Lymphoid Malignancies by Christina Y. Lee, Monika K. Shah, David Hoyos, Alexander Solovyov, Melanie Douglas, Ying Taur, P. Maslak, N. Esther Babady, Benjamin D. Greenbaum, Mini Kamboj, Santosha A. Vardhana

    Published 2021
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  18. 18
    Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells

    Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells by Antoine Tanne, Luciana R. Muniz, Anna M. Puzio‐Kuter, Katerina I. Leonova, Andrei V. Gudkov, David T. Ting, Rémi Monasson, Simona Cocco, Arnold J. Levine, Nina Bhardwaj, Benjamin D. Greenbaum

    Published 2015
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  19. 19
    Retroelement decay by the exonuclease XRN1 is a viral mimicry dependency in cancer

    Retroelement decay by the exonuclease XRN1 is a viral mimicry dependency in cancer by Amir Hosseini, Håvard T. Lindholm, Raymond Chen, Parinaz Mehdipour, Sajid A. Marhon, Charles A. Ishak, Paul C. Moore, Marie Classon, Andrea Di Gioacchino, Benjamin D. Greenbaum, Daniel D. De Carvalho

    Published 2024
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  20. 20
    A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy

    A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy by Marta Łuksza, Nadeem Riaz, Vladimir Makarov, Vinod P. Balachandran, Matthew D. Hellmann, Alexander Solovyov, Naiyer A. Rizvi, Taha Merghoub, Arnold J. Levine, Timothy A. Chan, Jedd D. Wolchok, Benjamin D. Greenbaum

    Published 2017
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