Resultados da pesquisa - Benedict Paten

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  1. 1
    Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment

    Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment Por Benedict Paten, Javier Herrero, Kathryn Beal, Ewan Birney

    Publicado em 2008
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  2. 2
    Whole-Genome Alignment and Comparative Annotation

    Whole-Genome Alignment and Comparative Annotation Por Joel Armstrong, Ian T. Fiddes, Mark Diekhans, Benedict Paten

    Publicado em 2018
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  3. 3
    Ragout—a reference-assisted assembly tool for bacterial genomes

    Ragout—a reference-assisted assembly tool for bacterial genomes Por Mikhail Kolmogorov, Brian J. Raney, Benedict Paten, Son Pham

    Publicado em 2014
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  4. 4
    The Genome 10K Project: A Way Forward

    The Genome 10K Project: A Way Forward Por Klaus‐Peter Koepfli, Benedict Paten, Stephen J. O’Brien

    Publicado em 2015
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  5. 5
    Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs

    Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs Por Benedict Paten, Javier Herrero, Kathryn Beal, Stephen Fitzgerald, Ewan Birney

    Publicado em 2008
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  6. 6
    Genome graphs and the evolution of genome inference

    Genome graphs and the evolution of genome inference Por Benedict Paten, Adam M. Novak, Jordan M. Eizenga, Erik Garrison

    Publicado em 2017
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  7. 7
    Haplotype-aware diplotyping from noisy long reads

    Haplotype-aware diplotyping from noisy long reads Por Jana Ebler, Marina Haukness, Trevor Pesout, Tobias Marschall, Benedict Paten

    Publicado em 2019
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  8. 8
    HAL: a hierarchical format for storing and analyzing multiple genome alignments

    HAL: a hierarchical format for storing and analyzing multiple genome alignments Por Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler

    Publicado em 2013
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  9. 9
    Haplotype-aware graph indexes

    Haplotype-aware graph indexes Por Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin

    Publicado em 2019
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  10. 10
    Cactus: Algorithms for genome multiple sequence alignment

    Cactus: Algorithms for genome multiple sequence alignment Por Benedict Paten, Dent Earl, Ngan Nguyen, Mark Diekhans, Daniel R. Zerbino, David Haussler

    Publicado em 2011
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  11. 11
    Improved data analysis for the MinION nanopore sequencer

    Improved data analysis for the MinION nanopore sequencer Por Miten Jain, Ian T. Fiddes, Karen H. Miga, Hugh E. Olsen, Benedict Paten, Mark Akeson

    Publicado em 2015
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  12. 12
    Genome-wide nucleotide-level mammalian ancestor reconstruction

    Genome-wide nucleotide-level mammalian ancestor reconstruction Por Benedict Paten, Javier Herrero, Stephen Fitzgerald, Kathryn Beal, Paul Flicek, Ian Holmes, Ewan Birney

    Publicado em 2008
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  13. 13
    Optimal gap-affine alignment in <i>O</i>(<i>s</i>) space

    Optimal gap-affine alignment in <i>O</i>(<i>s</i>) space Por Santiago Marco‐Sola, Jordan M. Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, Miquel Moretó

    Publicado em 2023
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  14. 14
    Cactus Graphs for Genome Comparisons

    Cactus Graphs for Genome Comparisons Por Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, David Haussler

    Publicado em 2011
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  15. 15
    Superbubbles, Ultrabubbles, and Cacti

    Superbubbles, Ultrabubbles, and Cacti Por Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey

    Publicado em 2018
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  16. 16
    Sequence tube maps: making graph genomes intuitive to commuters

    Sequence tube maps: making graph genomes intuitive to commuters Por Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Y. Tan, Benedict Paten, Daniel R. Zerbino

    Publicado em 2019
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  17. 17
    Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans

    Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans Por James A. Cahill, Joel Armstrong, Alden Deran, Carolyn J. Khoury, Benedict Paten, David Haussler, Erich D. Jarvis

    Publicado em 2021
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  18. 18
    Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling

    Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling Por Andrew D. Bailey, Jason Talkish, Hongxu Ding, Haller Igel, Alejandra Durán, Shreya Mantripragada, Benedict Paten, Manuel Ares

    Publicado em 2022
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  19. 19
    Mapping DNA methylation with high-throughput nanopore sequencing

    Mapping DNA methylation with high-throughput nanopore sequencing Por Arthur C Rand, Miten Jain, Jordan M. Eizenga, Audrey Musselman-Brown, Hugh E. Olsen, Mark Akeson, Benedict Paten

    Publicado em 2017
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  20. 20
    Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells

    Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells Por Tate Tunstall, Richard Kock, J. Váhala, Mark Diekhans, Ian T. Fiddes, Joel Armstrong, Benedict Paten, Oliver A. Ryder, Cynthia Steiner

    Publicado em 2018
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