Search Results - Ben Langmead

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  1. 1
    Aligning Short Sequencing Reads with Bowtie

    Aligning Short Sequencing Reads with Bowtie by Ben Langmead

    Published 2010
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  2. 2
    Cloud computing for genomic data analysis and collaboration

    Cloud computing for genomic data analysis and collaboration by Ben Langmead, Abhinav Nellore

    Published 2018
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  3. 3
    Dashing: fast and accurate genomic distances with HyperLogLog

    Dashing: fast and accurate genomic distances with HyperLogLog by Daniel Baker, Ben Langmead

    Published 2019
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  4. 4
    Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2

    Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2 by Daniel Baker, Ben Langmead

    Published 2023
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  5. 5
    Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification

    Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification by Li Song, Ben Langmead

    Published 2024
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  6. 6
    Mumemto: efficient maximal matching across pangenomes

    Mumemto: efficient maximal matching across pangenomes by Vikram S. Shivakumar, Ben Langmead

    Published 2025
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  7. 7
    The DNA data deluge

    The DNA data deluge by Michael C. Schatz, Ben Langmead

    Published 2013
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  8. 8
    Fast gapped-read alignment with Bowtie 2

    Fast gapped-read alignment with Bowtie 2 by Ben Langmead, Steven L. Salzberg

    Published 2012
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  9. 9
    ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets

    ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets by Alyssa C. Frazee, Ben Langmead, Jeffrey T. Leek

    Published 2011
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  10. 10
    Cloud-scale RNA-sequencing differential expression analysis with Myrna

    Cloud-scale RNA-sequencing differential expression analysis with Myrna by Ben Langmead, Kasper D. Hansen, Jeffrey T. Leek

    Published 2010
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  11. 11
    HISAT: a fast spliced aligner with low memory requirements

    HISAT: a fast spliced aligner with low memory requirements by Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Published 2015
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  12. 12
    FORGe: prioritizing variants for graph genomes

    FORGe: prioritizing variants for graph genomes by Jacob Pritt, Nae-Chyun Chen, Ben Langmead

    Published 2018
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  13. 13
    BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

    BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions by Kasper D. Hansen, Ben Langmead, Rafael A. Irizarry

    Published 2012
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  14. 14
    Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples

    Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples by Christopher Wilks, Phani Gaddipati, Abhinav Nellore, Ben Langmead

    Published 2017
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  15. 15
    Scaling read aligners to hundreds of threads on general-purpose processors

    Scaling read aligners to hundreds of threads on general-purpose processors by Ben Langmead, Christopher Wilks, Valentin Antonescu, Rone Charles

    Published 2018
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  16. 16
    EvANI benchmarking workflow for evolutionary distance estimation

    EvANI benchmarking workflow for evolutionary distance estimation by Sina Majidian, Stephen Hwang, Mohsen Zakeri, Ben Langmead

    Published 2025
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  17. 17
    Alignment of Next-Generation Sequencing Reads

    Alignment of Next-Generation Sequencing Reads by Knut Reinert, Ben Langmead, David Weese, Dirk J. Evers

    Published 2015
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  18. 18
    <i>Polyester</i>: simulating RNA-seq datasets with differential transcript expression

    <i>Polyester</i>: simulating RNA-seq datasets with differential transcript expression by Alyssa C. Frazee, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek

    Published 2015
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  19. 19
    SPUMONI 2: improved classification using a pangenome index of minimizer digests

    SPUMONI 2: improved classification using a pangenome index of minimizer digests by Omar Ahmed, Massimiliano Rossi, Travis Gagie, Christina Boucher, Ben Langmead

    Published 2023
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  20. 20
    Reference flow: reducing reference bias using multiple population genomes

    Reference flow: reducing reference bias using multiple population genomes by Nae-Chyun Chen, Brad Solomon, Taher Mun, Sheila Iyer, Ben Langmead

    Published 2021
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